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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle transport
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Accession:GO:0048489 term browser browse the term
Definition:The directed movement of synaptic vesicles.
Synonyms:related_synonym: synaptic vesicle fission;   synaptic vesicle fusion;   synaptic vesicle trafficking
 alt_id: GO:0016181


show annotations for term's descendants           Sort by:
 
synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5 cyclin-dependent kinase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:7,282,945...7,287,427
Ensembl chr 4:7,282,948...7,288,383
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:2148594 (MGI:MGI:2680876|PMID:14622577)
GO_REF:0000107
RGD
Ensembl
PMID:14622577 GO_REF:0000107, MGI:MGI:2680876 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 IDA RGD PMID:19755421 RGD:2316240 NCBI chr15:43,475,640...43,581,725
Ensembl chr15:43,477,629...43,542,939
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:MGI:2183527 (MGI:MGI:3761431|PMID:17418794) RGD PMID:17418794 MGI:MGI:3761431 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Kif5a kinesin family member 5A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,515,832...70,552,897
Ensembl chr 7:70,513,343...70,556,827
JBrowse link
G Kif5b kinesin family member 5B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:54,181,416...54,219,048
Ensembl chr17:54,181,419...54,212,096
JBrowse link
G Kif5c kinesin family member 5C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:35,014,157...35,257,417
Ensembl chr 3:35,014,538...35,257,407
JBrowse link
G Lin7a lin-7 homolog A, crumbs cell polarity complex component ISO
IEA
(MGI:MGI:2680876|PMID:14622577)
GO_REF:0000107
RGD
Ensembl
PMID:14622577 GO_REF:0000107, MGI:MGI:2680876 NCBI chr 7:49,429,613...49,627,835
Ensembl chr 7:49,385,705...49,656,856
JBrowse link
G Mylk2 myosin light chain kinase 2 IMP Mlck controls the movemnet of synaptic vesicles RGD PMID:15980175 RGD:1600508 NCBI chr 3:148,386,185...148,397,851
Ensembl chr 3:148,386,189...148,399,501
JBrowse link
G Nlgn1 neuroligin 1 IMP PMID:19628693 CACAO PMID:19628693 RGD:8554760 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Rab3a RAB3A, member RAS oncogene family ISO (MGI:MGI:3653776|PMID:11598194) RGD PMID:11598194 MGI:MGI:3653776 NCBI chr16:20,435,098...20,439,206
Ensembl chr16:20,435,101...20,439,206
JBrowse link
G Snapin SNAP-associated protein ISO
ISS
(PMID:18167355)
GO_REF:0000024
RGD
UniProt
PMID:18167355 GO_REF:0000024 NCBI chr 2:189,878,159...189,880,743
Ensembl chr 2:189,878,168...189,880,743
JBrowse link
G Snca synuclein alpha ISO MGI:MGI:2389489 (MGI:MGI:2388931|PMID:12388586) RGD PMID:12388586 MGI:MGI:2388931 NCBI chr 4:90,782,412...90,883,236
Ensembl chr 4:90,782,374...90,882,285
JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin ISO
IBA
(PMID:24794856)
PMID:21873635
RGD PMID:24794856, PMID:21873635 RGD:13792537 NCBI chr 3:113,999,600...114,064,438
Ensembl chr 3:113,999,719...114,065,170
JBrowse link
G Synj1 synaptojanin 1 ISO MGI:MGI:2179801 (MGI:MGI:1346710|PMID:10535736) RGD PMID:10535736 MGI:MGI:1346710 NCBI chr11:31,105,784...31,181,573
Ensembl chr11:31,104,787...31,180,642
JBrowse link
G Tmem230 transmembrane protein 230 ISO
ISS
(PMID:27270108)
GO_REF:0000024
RGD
UniProt
PMID:27270108 GO_REF:0000024 NCBI chr 3:124,870,867...124,879,274
Ensembl chr 3:124,870,869...124,879,216
JBrowse link
G Tor1a torsin family 1, member A ISO
ISS
(PMID:18167355)
GO_REF:0000024
RGD
UniProt
PMID:18167355 GO_REF:0000024 NCBI chr 3:9,800,322...9,807,318
Ensembl chr 3:9,800,322...9,807,328
JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO
IBA
(MGI:MGI:5437407|PMID:21998198)
PMID:21873635
RGD PMID:21998198, PMID:21873635 MGI:MGI:5437407, RGD:13792537 NCBI chr 2:24,022,815...24,227,522
Ensembl chr 2:24,024,791...24,226,224
JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 ISO
IBA
(MGI:MGI:5437407|PMID:21998198)
PMID:21873635
RGD PMID:21998198, PMID:21873635 MGI:MGI:5437407, RGD:13792537 NCBI chr 1:143,284,041...143,315,846
Ensembl chr 1:143,283,996...143,315,633
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 ISO
IBA
(MGI:MGI:5437407|PMID:21998198)
PMID:21873635
RGD PMID:21998198, PMID:21873635 MGI:MGI:5437407, RGD:13792537 NCBI chr 7:11,838,639...11,873,992
Ensembl chr 7:11,838,639...11,873,984
JBrowse link
G Ap3m1 adaptor related protein complex 3 subunit mu 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5437407|PMID:21998198)
Ensembl
UniProt
RGD
PMID:21998198 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5437407 NCBI chr15:3,435,998...3,454,281
Ensembl chr15:3,436,361...3,454,279
JBrowse link
G Ap3m2 adaptor related protein complex 3 subunit mu 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5437407|PMID:21998198)
Ensembl
UniProt
RGD
PMID:21998198 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5437407 NCBI chr16:74,075,842...74,091,230
Ensembl chr16:74,076,812...74,091,139
JBrowse link
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 ISO (MGI:MGI:5437407|PMID:21998198) RGD PMID:21998198 MGI:MGI:5437407 NCBI chr18:40,732,472...40,798,064
Ensembl chr18:40,732,480...40,797,761
JBrowse link
G Ap3s2 adaptor related protein complex 3 subunit sigma 2 ISO (MGI:MGI:5437407|PMID:21998198) RGD PMID:21998198 MGI:MGI:5437407 NCBI chr 1:141,612,961...141,655,417
Ensembl chr 1:141,612,963...141,655,894
JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex-1, subunit 1 ISO
ISS
(MGI:MGI:5437407|PMID:21998198)
GO_REF:0000024
RGD
UniProt
PMID:21998198 GO_REF:0000024, MGI:MGI:5437407 NCBI chr 7:3,342,630...3,346,238
Ensembl chr 7:3,342,630...3,346,238
JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex-1, subunit 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5437407|PMID:21998198)
Ensembl
UniProt
RGD
PMID:21998198 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5437407 NCBI chr 1:263,913,901...263,920,989
Ensembl chr 1:263,913,854...263,920,962
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 ISO (MGI:MGI:5437407|PMID:21998198) RGD PMID:21998198 MGI:MGI:5437407 NCBI chr 1:80,414,766...80,417,385
Ensembl chr 1:80,415,686...80,416,273
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 ISO (MGI:MGI:5437407|PMID:21998198) RGD PMID:21998198 MGI:MGI:5437407 NCBI chr14:79,013,808...79,015,108
Ensembl chr14:79,013,807...79,015,112
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO
ISS
(MGI:MGI:5437407|PMID:21998198)
GO_REF:0000024
RGD
UniProt
PMID:21998198 GO_REF:0000024, MGI:MGI:5437407 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 ISO
ISS
(MGI:MGI:5437407|PMID:21998198)
GO_REF:0000024
RGD
UniProt
PMID:21998198 GO_REF:0000024, MGI:MGI:5437407 NCBI chr 3:114,869,478...114,880,218
Ensembl chr 3:114,869,459...114,881,590
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 ISO
IBA
ISS
(MGI:MGI:5437407|PMID:21998198)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21998198, PMID:21873635 GO_REF:0000024, MGI:MGI:5437407, RGD:13792537 NCBI chr17:20,090,136...20,182,332
Ensembl chr17:20,090,246...20,182,206
JBrowse link
G Madd MAP-kinase activating death domain ISO (MGI:MGI:6189386|PMID:18849981) RGD PMID:18849981 MGI:MGI:6189386 NCBI chr 3:79,960,301...80,003,023
Ensembl chr 3:79,960,301...80,003,032
JBrowse link
G Snapin SNAP-associated protein ISO
ISS
(MGI:MGI:5437407|PMID:21998198)
GO_REF:0000024
RGD
UniProt
PMID:21998198 GO_REF:0000024, MGI:MGI:5437407 NCBI chr 2:189,878,159...189,880,743
Ensembl chr 2:189,878,168...189,880,743
JBrowse link
G Trim46 tripartite motif-containing 46 ISO (MGI:MGI:5708763|PMID:26671463) RGD PMID:26671463 MGI:MGI:5708763 NCBI chr 2:188,548,608...188,561,617
Ensembl chr 2:188,548,644...188,561,360
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 IMP PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chr 1:220,474,485...220,480,723
Ensembl chr 1:220,474,493...220,480,132
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Borcs5 BLOC-1 related complex subunit 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:168,396,034...168,466,968
Ensembl chr 4:168,396,775...168,464,352
JBrowse link
G Map2 microtubule-associated protein 2 IMP PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 9:73,204,753...73,462,965
Ensembl chr 9:73,319,710...73,462,972
JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc2a4 solute carrier family 2 member 4 IDA
IMP
PMID:28111082 SynGO PMID:28111082, PMID:28111082 RGD:13702195, RGD:13702195 NCBI chr10:56,552,921...56,558,562
Ensembl chr10:56,552,983...56,558,487
JBrowse link
regulation of synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 ISO
IBA
(MGI:MGI:4941068|PMID:21307259)
PMID:21873635
RGD PMID:21307259, PMID:21873635 MGI:MGI:4941068, RGD:13792537 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:18842885 RGD:8554167 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
synaptic vesicle budding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP-ribosylation factor 1 IMP RGD PMID:9590176 RGD:9684955 NCBI chr10:45,562,700...45,579,214
Ensembl chr10:45,563,547...45,579,029
JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 ISO (MGI:MGI:5617942|PMID:20203623) RGD PMID:20203623 MGI:MGI:5617942 NCBI chr  X:32,329,883...32,376,301
Ensembl chr  X:32,329,598...32,355,307
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:MGI:6189637|PMID:11588176) RGD PMID:11588176 MGI:MGI:6189637 NCBI chr 2:24,022,815...24,227,522
Ensembl chr 2:24,024,791...24,226,224
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 IDA
IMP
IBA
ISO
PMID:22539861
PMID:21873635
(MGI:MGI:6189637|PMID:11588176)
RGD PMID:11588176, PMID:22539861, PMID:22539861, PMID:21873635 MGI:MGI:6189637, RGD:12050120, RGD:12050120, RGD:13792537 NCBI chr 7:11,838,639...11,873,992
Ensembl chr 7:11,838,639...11,873,984
JBrowse link
G Btbd8 BTB domain containing 8 ISO (MGI:MGI:6104538|PMID:29262337) RGD PMID:29262337 MGI:MGI:6104538 NCBI chr14:3,282,422...3,351,740
Ensembl chr14:3,284,089...3,300,200
JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 ISO
IBA
UniProtKB:Q8BZ98 (MGI:MGI:5285027|PMID:21689597)
PMID:21873635
RGD PMID:21689597, PMID:21873635 MGI:MGI:5285027, RGD:13792537 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Dnm2 dynamin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:22,458,869...22,540,649
Ensembl chr 8:22,458,899...22,540,524
JBrowse link
G Dnm3 dynamin 3 ISO
IBA
UniProtKB:P39053 (MGI:MGI:5285027|PMID:21689597)
PMID:21873635
RGD PMID:21689597, PMID:21873635 MGI:MGI:5285027, RGD:13792537 NCBI chr13:79,906,711...80,379,967
Ensembl chr13:79,910,382...80,379,929
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 IC PMID:21832070 SynGO PMID:21832070 RGD:9685531 NCBI chr 5:128,923,809...129,022,268
Ensembl chr 5:128,923,934...129,022,054
JBrowse link
G Mx1 myxovirus (influenza virus) resistance 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:37,891,150...37,916,775
Ensembl chr11:37,891,156...37,914,983
JBrowse link
G Mx2 MX dynamin like GTPase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:38,035,306...38,066,185
Ensembl chr11:38,035,450...38,059,950
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Snap91 synaptosome associated protein 91 ISO
IBA
(MGI:MGI:5707086|PMID:26412491)
PMID:21873635
RGD PMID:26412491, PMID:21873635 MGI:MGI:5707086, RGD:13792537 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
synaptic vesicle coating term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cltb clathrin, light chain B NAS PMID:3563513 UniProt PMID:3563513 RGD:70686 NCBI chr17:10,537,348...10,554,999
Ensembl chr17:10,537,365...10,554,989
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    localization 6496
      establishment of localization 4911
        transport 4759
          synaptic vesicle transport 50
            negative regulation of synaptic vesicle transport + 1
            positive regulation of synaptic vesicle transport + 2
            regulation of synaptic vesicle transport + 5
            synaptic vesicle budding + 15
            synaptic vesicle cytoskeletal transport + 20
Path 2
Term Annotations click to browse term
  biological_process 20027
    localization 6496
      cellular localization 2966
        organelle localization 573
          establishment of organelle localization 415
            establishment of vesicle localization 160
              synaptic vesicle transport 50
                negative regulation of synaptic vesicle transport + 1
                positive regulation of synaptic vesicle transport + 2
                regulation of synaptic vesicle transport + 5
                synaptic vesicle budding + 15
                synaptic vesicle cytoskeletal transport + 20
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.