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ONTOLOGY REPORT - ANNOTATIONS


Term:spermatid differentiation
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Accession:GO:0048515 term browser browse the term
Definition:The process whose specific outcome is the progression of a spermatid over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell.
Synonyms:exact_synonym: spermatid cell differentiation


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spermatid differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:1624291
RGD:1600115
G Bscl2 BSCL2 lipid droplet biogenesis associated, seipin JBrowse link 1 225,035,956 225,046,137 RGD:1624291
G Ddx6 DEAD-box helicase 6 JBrowse link 8 48,924,768 48,961,394 RGD:10755411
G Mast2 microtubule associated serine/threonine kinase 2 JBrowse link 5 135,149,336 135,285,337 RGD:1624291
G Nphp1 nephrocystin 1 JBrowse link 3 120,316,048 120,370,089 RGD:1624291
G Rhbdd1 rhomboid domain containing 1 JBrowse link 9 88,110,731 88,229,462 RGD:1624291
RGD:1600115
G Sox3 SRY-box transcription factor 3 JBrowse link X 144,035,162 144,037,364 RGD:1624291
G Tmem119 transmembrane protein 119 JBrowse link 12 48,598,498 48,605,704 RGD:1624291
RGD:1600115
acrosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acrbp acrosin binding protein JBrowse link 4 157,563,990 157,577,045 RGD:1600115
RGD:1624291
G Agfg1 ArfGAP with FG repeats 1 JBrowse link 9 88,607,508 88,663,486 RGD:1600115
RGD:1624291
G Ccdc136 coiled-coil domain containing 136 JBrowse link 4 56,674,737 56,704,501 RGD:1624291
G Chn2 chimerin 2 JBrowse link 4 84,423,708 84,452,989 RGD:724725
G Fabp9 fatty acid binding protein 9 JBrowse link 2 93,803,503 93,807,069 RGD:634410
G LOC100294508 dyslexia susceptibility 2-like JBrowse link 5 144,779,306 144,872,271 RGD:1624291
G LOC100910138 serine protease inhibitor Kazal-type 2-like JBrowse link 14 33,906,836 33,913,448 RGD:1600115
G Mfsd14a major facilitator superfamily domain containing 14A JBrowse link 2 219,661,204 219,697,548 RGD:1624291
G Nectin2 nectin cell adhesion molecule 2 JBrowse link 1 80,631,449 80,666,617 RGD:1624291
RGD:1600115
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 JBrowse link 10 61,456,144 61,577,412 RGD:1624291
RGD:1600115
G Pla2g3 phospholipase A2, group III JBrowse link 14 83,724,828 83,730,614 RGD:1624291
RGD:1600115
G Rfx2 regulatory factor X2 JBrowse link 9 10,216,194 10,283,467 RGD:1600115
RGD:1624291
G Sec23ip SEC23 interacting protein JBrowse link 1 200,167,075 200,210,362 RGD:1624291
G Spaca1 sperm acrosome associated 1 JBrowse link 5 49,424,064 49,439,180 RGD:1624291
RGD:13792537
G Spink2 serine peptidase inhibitor, Kazal type 2 JBrowse link 14 33,247,278 33,253,913 RGD:1600115
RGD:1624291
G Tbc1d20 TBC1 domain family, member 20 JBrowse link 3 147,772,006 147,790,946 RGD:1624291
RGD:1600115
G Tbpl1 TATA-box binding protein like 1 JBrowse link 1 23,977,154 24,002,512 RGD:1624291
RGD:1600115
G Tmf1 TATA element modulatory factor 1 JBrowse link 4 129,521,986 129,546,024 RGD:1624291
RGD:1600115
G Txndc8 thioredoxin domain containing 8 JBrowse link 5 75,088,063 75,116,427 RGD:1303999
G Zpbp zona pellucida binding protein JBrowse link 14 91,360,670 91,556,406 RGD:1624291
G Zpbp2 zona pellucida binding protein 2 JBrowse link 10 86,513,645 86,523,375 RGD:1624291
RGD:1600115
intramanchette transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cep131 centrosomal protein 131 JBrowse link 10 109,243,240 109,267,636 RGD:1624291
manchette assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cep131 centrosomal protein 131 JBrowse link 10 109,243,240 109,267,636 RGD:1624291
G Hook1 hook microtubule-tethering protein 1 JBrowse link 5 114,940,053 115,000,691 RGD:1624291
RGD:1600115
G Ttc26 tetratricopeptide repeat domain 26 JBrowse link 4 66,090,178 66,147,998 RGD:1624291
RGD:1600115
negative regulation of sperm capacitation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lcn11 lipocalin 11 JBrowse link 3 2,935,396 2,938,883 RGD:1624291
positive regulation of flagellated sperm motility involved in capacitation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccr6 C-C motif chemokine receptor 6 JBrowse link 1 53,063,380 53,087,519 RGD:1624291
RGD:1600115
G Defb1 defensin beta 1 JBrowse link 16 75,294,385 75,309,127 RGD:1624291
RGD:1600115
G Iqcf1 IQ motif containing F1 JBrowse link 8 115,191,919 115,195,599 RGD:1624291
RGD:1600115
G Rnase9 ribonuclease A family member 9 JBrowse link 15 27,964,000 27,968,492 RGD:1624291
proacrosomal vesicle fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100294508 dyslexia susceptibility 2-like JBrowse link 5 144,779,306 144,872,271 RGD:1624291
regulation of sperm capacitation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tcp11 t-complex 11 JBrowse link 20 7,645,619 7,657,222 RGD:1600115
RGD:1624291
sperm axoneme assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bbs2 Bardet-Biedl syndrome 2 JBrowse link 19 11,385,921 11,421,523 RGD:1624291
RGD:1600115
G Cep131 centrosomal protein 131 JBrowse link 10 109,243,240 109,267,636 RGD:1624291
G Cfap157 cilia and flagella associated protein 157 JBrowse link 3 11,813,575 11,820,549 RGD:1624291
RGD:1600115
G Cfap43 cilia and flagella associated protein 43 JBrowse link 1 267,511,359 267,598,642 RGD:1600115
RGD:1624291
G Cfap44 cilia and flagella associated protein 44 JBrowse link 11 61,160,793 61,237,056 RGD:1624291
RGD:13792537
G Dnah1 dynein, axonemal, heavy chain 1 JBrowse link 16 7,345,131 7,407,009 RGD:1624291
RGD:1600115
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:1624291
G Iqcg IQ motif containing G JBrowse link 11 70,967,228 71,007,708 RGD:1624291
RGD:13792537
RGD:1600115
G LOC103694902 ubiquitin-conjugating enzyme E2 B RGD:1600115
G Neurl1 neuralized E3 ubiquitin protein ligase 1 JBrowse link 1 266,953,006 267,038,879 RGD:1624291
RGD:1600115
G Pla2g3 phospholipase A2, group III JBrowse link 14 83,724,828 83,730,614 RGD:1624291
RGD:1600115
G Spag16 sperm associated antigen 16 JBrowse link 9 77,027,626 77,833,476 RGD:1624291
G Spag6l sperm associated antigen 6-like JBrowse link 11 88,424,493 88,517,910 RGD:1624291
RGD:1600115
G Spef2 sperm flagellar 2 JBrowse link 2 58,901,937 59,084,194 RGD:1624291
G Tpgs1 tubulin polyglutamylase complex subunit 1 JBrowse link 7 12,912,251 12,918,173 RGD:1624291
RGD:1600115
G Ttll1 tubulin tyrosine ligase like 1 JBrowse link 7 124,338,396 124,367,719 RGD:1624291
RGD:1600115
G Ttll5 tubulin tyrosine ligase like 5 JBrowse link 6 109,693,915 109,910,479 RGD:1624291
G Ube2b ubiquitin-conjugating enzyme E2B JBrowse link 10 37,439,947 37,454,867 RGD:1624291
RGD:1600115
sperm capacitation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abhd2 abhydrolase domain containing 2 JBrowse link 1 140,998,240 141,087,405 RGD:1624291
RGD:13792537
G Bsph1 binder of sperm protein homolog 1 JBrowse link 1 75,705,172 75,793,950 RGD:1624291
G Cabyr calcium binding tyrosine phosphorylation regulated JBrowse link 18 4,082,175 4,096,650 RGD:1600115
G Catsper2 cation channel, sperm associated 2 JBrowse link 3 113,357,361 113,379,498 RGD:1624291
RGD:13792537
G Catsper3 cation channel, sperm associated 3 JBrowse link 17 8,900,034 8,925,385 RGD:1624291
RGD:1600115
G Catsper4 cation channel, sperm associated 4 JBrowse link 5 152,430,052 152,446,808 RGD:1624291
RGD:1600115
G Catsperd cation channel sperm associated auxiliary subunit delta JBrowse link 9 10,390,307 10,428,666 RGD:1624291
RGD:1600115
G Catsperz catsper channel auxiliary subunit zeta JBrowse link 1 222,179,451 222,182,716 RGD:13792537
RGD:1624291
G Cftr CF transmembrane conductance regulator JBrowse link 4 42,693,263 42,860,679 RGD:1600115
RGD:1624291
G Dld dihydrolipoamide dehydrogenase JBrowse link 6 50,597,677 50,618,694 RGD:1624291
RGD:1600115
G Efcab9 EF-hand calcium binding domain 9 JBrowse link 10 17,399,291 17,406,915 RGD:1600115
RGD:1624291
G Pcsk4 proprotein convertase subtilisin/kexin type 4 JBrowse link 7 12,247,498 12,255,721 RGD:1600115
RGD:1624291
G Pebp1 phosphatidylethanolamine binding protein 1 JBrowse link 12 45,026,948 45,031,148 RGD:1624291
RGD:1600115
G Prkaca protein kinase cAMP-activated catalytic subunit alpha JBrowse link 19 25,095,089 25,118,869 RGD:1600115
RGD:1624291
G Ropn1 rhophilin associated tail protein 1 JBrowse link 11 69,326,785 69,355,788 RGD:1624291
RGD:1600115
G Ropn1l rhophilin associated tail protein 1-like JBrowse link 2 84,520,421 84,531,192 RGD:1624291
RGD:1600115
G Semg1 semenogelin 1 JBrowse link 3 160,627,609 160,630,457 RGD:1624291
RGD:13792537
G Septin4 septin 4 JBrowse link 10 74,860,068 74,884,196 RGD:1624291
G Slc26a3 solute carrier family 26 member 3 JBrowse link 6 50,725,085 50,766,306 RGD:1624291
RGD:1600115
G Slc26a6 solute carrier family 26 member 6 JBrowse link 8 117,648,792 117,659,376 RGD:1624291
G Slc26a8 solute carrier family 26 member 8 JBrowse link 20 5,870,714 5,933,151 RGD:1600115
G Spink1 serine peptidase inhibitor, Kazal type 1 JBrowse link 18 38,221,919 38,242,092 RGD:1624291
G Svs3b seminal vesicle secretory protein 3B JBrowse link 3 159,082,346 159,084,621 RGD:13792537
sperm chromatin condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fshr follicle stimulating hormone receptor JBrowse link 6 12,796,383 12,997,817 RGD:1624291
G H1f7 H1.7 linker histone JBrowse link 7 139,871,491 139,872,858 RGD:1624291
RGD:1600115
G Selenof selenoprotein F JBrowse link 2 250,600,823 250,633,903 RGD:728803
G Sycp1 synaptonemal complex protein 1 JBrowse link 2 205,274,766 205,426,869 RGD:1624291
RGD:1600115
G Sycp3 synaptonemal complex protein 3 JBrowse link 7 29,029,887 29,044,344 RGD:1624291
G Tssk6 testis-specific serine kinase 6 JBrowse link 16 21,272,282 21,274,756 RGD:1624291
RGD:1600115
sperm individualization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Spem1 spermatid maturation 1 JBrowse link 10 56,428,447 56,429,748 RGD:1624291
RGD:13792537
spermatid development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acrbp acrosin binding protein JBrowse link 4 157,563,990 157,577,045 RGD:1624291
G Adad1 adenosine deaminase domain containing 1 JBrowse link 2 123,790,798 123,848,598 RGD:1624291
RGD:1600115
G Adrm1 adhesion regulating molecule 1 JBrowse link 3 175,548,181 175,552,943 RGD:1624291
G Aff4 AF4/FMR2 family, member 4 JBrowse link 10 38,692,167 38,773,021 RGD:1624291
RGD:1600115
G Alms1 ALMS1, centrosome and basal body associated protein JBrowse link 4 117,371,544 117,472,310 RGD:1624291
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link 8 64,115,005 64,154,432 RGD:1624291
RGD:1600115
G Brip1 BRCA1 interacting protein C-terminal helicase 1 JBrowse link 10 73,507,009 73,632,742 RGD:1624291
RGD:1600115
G Btg1 BTG anti-proliferation factor 1 JBrowse link 7 37,812,831 37,815,088 RGD:69781
G Capza3 capping actin protein of muscle Z-line subunit alpha 3 JBrowse link 4 174,181,644 174,182,857 RGD:69796
RGD:1600115
RGD:1624291
G Ccdc42 coiled-coil domain containing 42 JBrowse link 10 55,169,312 55,179,489 RGD:1624291
RGD:1600115
G Ccdc63 coiled-coil domain containing 63 JBrowse link 12 39,905,120 39,950,719 RGD:1624291
RGD:1600115
G Ccnb1ip1 cyclin B1 interacting protein 1 JBrowse link 15 27,720,220 27,736,528 RGD:1624291
RGD:1600115
G Cdyl chromodomain Y-like JBrowse link 17 29,672,925 29,895,416 RGD:1624291
RGD:1600115
G Celf1 CUGBP, Elav-like family member 1 JBrowse link 3 79,768,900 79,844,548 RGD:1624291
RGD:1600115
G Cep131 centrosomal protein 131 JBrowse link 10 109,243,240 109,267,636 RGD:1624291
G Cep57 centrosomal protein 57 JBrowse link 8 12,335,430 12,355,425 RGD:1624291
RGD:1600115
G Cib1 calcium and integrin binding 1 JBrowse link 1 142,014,962 142,020,461 RGD:1624291
RGD:1600115
G Ddias DNA damage-induced apoptosis suppressor JBrowse link 1 157,675,754 157,700,064 RGD:1624291
G Ddx25 DEAD-box helicase 25 JBrowse link 8 36,744,686 36,760,720 RGD:1600115
RGD:1624291
G Dhh desert hedgehog signaling molecule JBrowse link 7 140,575,288 140,580,783 RGD:1624291
RGD:1600115
G Dmc1 DNA meiotic recombinase 1 JBrowse link 7 120,796,217 120,840,524 RGD:1624291
RGD:1600115
G Dpy19l2 dpy-19 like 2 JBrowse link 8 25,710,492 25,829,589 RGD:1624291
RGD:13792537
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 JBrowse link 6 134,958,854 135,085,769 RGD:13207350
G Dynll1 dynein light chain LC8-type 1 JBrowse link 12 47,074,200 47,076,573 RGD:13208521
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link 20 4,576,033 4,592,980 RGD:1624291
RGD:1600115
G Fancg FA complementation group G JBrowse link 5 58,448,060 58,456,416 RGD:1624291
RGD:1600115
G Fndc3a fibronectin type III domain containing 3a JBrowse link 15 54,378,865 54,582,954 RGD:1624291
RGD:1600115
G Fscn3 fascin actin-bundling protein 3 JBrowse link 4 55,719,976 55,729,442 RGD:1304524
G Fshr follicle stimulating hormone receptor JBrowse link 6 12,796,383 12,997,817 RGD:1624291
G Galntl5 polypeptide N-acetylgalactosaminyltransferase-like 5 JBrowse link 4 6,333,049 6,450,137 RGD:1624291
RGD:13792537
G Gapdhs glyceraldehyde-3-phosphate dehydrogenase, spermatogenic JBrowse link 1 89,180,063 89,195,347 RGD:2301985
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1600115
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
RGD:1600115
G Hook1 hook microtubule-tethering protein 1 JBrowse link 5 114,940,053 115,000,691 RGD:1624291
G Hspa2 heat shock protein family A (Hsp70) member 2 JBrowse link 6 99,433,575 99,436,288 RGD:1624291
RGD:1600115
G Ica1l islet cell autoantigen 1-like JBrowse link 9 66,788,094 66,848,958 RGD:1624291
RGD:1600115
G Ing2 inhibitor of growth family, member 2 JBrowse link 16 47,714,756 47,725,836 RGD:1624291
RGD:1600115
G Insl6 insulin-like 6 JBrowse link 1 247,473,292 247,476,827 RGD:1624291
G Iqcg IQ motif containing G JBrowse link 11 70,967,228 71,007,708 RGD:1600115
RGD:1624291
G Jam3 junctional adhesion molecule 3 JBrowse link 8 28,147,110 28,208,466 RGD:1624291
RGD:1600115
G Kif6 kinesin family member 6 JBrowse link 9 13,016,973 13,311,971 RGD:633049
G Kit KIT proto-oncogene receptor tyrosine kinase JBrowse link 14 35,072,131 35,149,638 RGD:1624291
RGD:1600115
G Klhl10 kelch-like family member 10 JBrowse link 10 88,356,652 88,372,929 RGD:1624291
RGD:1600115
G Limk2 LIM domain kinase 2 JBrowse link 14 83,564,048 83,641,996 RGD:1357216
G LOC100364435 thymosin, beta 10-like JBrowse link 7 122,433,061 122,433,267 RGD:729947
G LOC100366231 X-linked lymphocyte-regulated 5C-like JBrowse link 1 147,060,791 147,076,946 RGD:13792537
G LOC100910138 serine protease inhibitor Kazal-type 2-like JBrowse link 14 33,906,836 33,913,448 RGD:1600115
G LOC100911002 synaptonemal complex protein 3-like JBrowse link 1 146,972,526 146,989,856 RGD:13792537
G LOC100911047 X-linked lymphocyte-regulated protein 3A-like JBrowse link 1 147,000,037 147,012,436 RGD:13792537
G LOC103690322 X-linked lymphocyte-regulated protein 3A-like RGD:13792537
G LOC108348175 protein quaking-like JBrowse link 1 50,828,585 50,936,459 RGD:1600115
G Mei1 meiotic double-stranded break formation protein 1 JBrowse link 7 123,308,041 123,361,391 RGD:1624291
G Meioc meiosis specific with coiled-coil domain JBrowse link 10 90,622,954 90,641,883 RGD:1624291
RGD:1600115
G Mfsd14a major facilitator superfamily domain containing 14A JBrowse link 2 219,661,204 219,697,548 RGD:1624291
G Mkks McKusick-Kaufman syndrome JBrowse link 3 129,866,542 129,885,213 RGD:1624291
RGD:1600115
G Nectin2 nectin cell adhesion molecule 2 JBrowse link 1 80,631,449 80,666,617 RGD:1624291
G Nectin3 nectin cell adhesion molecule 3 JBrowse link 11 57,897,879 57,995,193 RGD:1600115
G Nme5 NME/NM23 family member 5 JBrowse link 18 27,357,460 27,374,641 RGD:1624291
RGD:1600115
G Nme8 NME/NM23 family member 8 JBrowse link 17 47,300,932 47,368,543 RGD:1299632
G Nsun2 NOP2/Sun RNA methyltransferase 2 JBrowse link 1 36,295,650 36,319,906 RGD:1624291
RGD:1600115
G Nup210l nucleoporin 210-like JBrowse link 2 189,453,932 189,571,918 RGD:1624291
RGD:1600115
G Oca2 OCA2 melanosomal transmembrane protein JBrowse link 1 114,661,970 114,987,433 RGD:1624291
RGD:1600115
G Odf2 outer dense fiber of sperm tails 2 JBrowse link 3 8,449,733 8,495,764 RGD:69913
G Osbp2 oxysterol binding protein 2 JBrowse link 14 83,943,976 84,107,031 RGD:1624291
RGD:1600115
G Pacrg parkin coregulated JBrowse link 1 50,070,273 50,491,323 RGD:1624291
G Pank2 pantothenate kinase 2 JBrowse link 3 123,807,911 123,841,797 RGD:1624291
RGD:1600115
G Pdilt protein disulfide isomerase-like, testis expressed JBrowse link 1 189,207,164 189,238,796 RGD:1624291
RGD:1600115
G Pebp1 phosphatidylethanolamine binding protein 1 JBrowse link 12 45,026,948 45,031,148 RGD:1357207
G Piwil1 piwi-like RNA-mediated gene silencing 1 JBrowse link 12 31,608,641 31,629,961 RGD:1624291
G Pld6 phospholipase D family, member 6 JBrowse link 10 46,142,313 46,145,774 RGD:1624291
RGD:1600115
G Ppp2r2b protein phosphatase 2, regulatory subunit B, beta JBrowse link 18 36,985,709 37,421,383 RGD:633587
G Prkg1 protein kinase cGMP-dependent 1 JBrowse link 1 248,982,039 250,300,952 RGD:1599621
G Prm1 protamine 1 JBrowse link 10 4,945,995 4,946,241 RGD:1624291
G Prm2 protamine 2 JBrowse link 10 4,950,484 4,950,920 RGD:1624291
RGD:13792537
G Pygo1 pygopus family PHD finger 1 JBrowse link 8 79,607,013 79,625,188 RGD:1624291
G Pygo2 pygopus family PHD finger 2 JBrowse link 2 188,757,167 188,762,285 RGD:1624291
G Qk quaking JBrowse link 1 50,983,647 51,050,692 RGD:1624291
G Ran RAN, member RAS oncogene family JBrowse link 12 31,319,556 31,324,105 RGD:727421
G Rec8 REC8 meiotic recombination protein JBrowse link 15 34,296,922 34,304,387 RGD:1624291
RGD:1600115
G Rfx2 regulatory factor X2 JBrowse link 9 10,216,194 10,283,467 RGD:1600115
RGD:1624291
G RGD1559891 similar to synaptonemal complex protein 3 JBrowse link 1 201,901,213 201,903,582 RGD:13792537
G Rimbp3 RIMS binding protein 3 JBrowse link 11 88,033,213 88,039,002 RGD:1624291
RGD:13792537
G Rnf17 ring finger protein 17 JBrowse link 15 36,609,348 36,744,750 RGD:1624291
RGD:1600115
G Rnf38 ring finger protein 38 JBrowse link 5 59,604,783 59,713,108 RGD:633521
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1624291
RGD:1600115
G Rsph1 radial spoke head component 1 JBrowse link 20 9,998,698 10,020,719 RGD:1624291
G Sec23ip SEC23 interacting protein JBrowse link 1 200,167,075 200,210,362 RGD:1624291
G Septin4 septin 4 JBrowse link 10 74,860,068 74,884,196 RGD:1624291
G Six5 SIX homeobox 5 JBrowse link 1 80,000,106 80,005,303 RGD:1624291
RGD:1600115
G Slirp SRA stem-loop interacting RNA binding protein JBrowse link 6 111,476,768 111,486,039 RGD:1624291
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 244,615,811 244,783,736 RGD:9586361
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:9586361
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 JBrowse link 10 87,116,827 87,138,890 RGD:9586361
G Spink2 serine peptidase inhibitor, Kazal type 2 JBrowse link 14 33,247,278 33,253,913 RGD:1600115
RGD:1624291
G Spo11 SPO11, initiator of meiotic double stranded breaks JBrowse link 3 170,991,573 171,008,226 RGD:1624291
RGD:1600115
G Stk11 serine/threonine kinase 11 JBrowse link 7 12,440,751 12,457,513 RGD:1624291
G Strbp spermatid perinuclear RNA binding protein JBrowse link 3 21,817,680 21,956,988 RGD:1624291
RGD:1600115
G Sun5 Sad1 and UNC84 domain containing 5 JBrowse link 3 149,336,136 149,356,191 RGD:1624291
G Sycp3 synaptonemal complex protein 3 JBrowse link 7 29,029,887 29,044,344 RGD:13792537
G Taf7l TATA-box binding protein associated factor 7-like JBrowse link X 105,292,338 105,308,554 RGD:1624291
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link 7 144,121,688 144,126,860 RGD:1624291
RGD:1600115
G Tcp1 t-complex 1 JBrowse link 1 48,025,664 48,033,343 RGD:1304423
G Tdrd5 tudor domain containing 5 JBrowse link 13 73,872,637 73,922,640 RGD:1600115
RGD:1624291
G Tmf1 TATA element modulatory factor 1 JBrowse link 4 129,521,986 129,546,024 RGD:1624291
G Tmsb10 thymosin, beta 10 JBrowse link 4 100,882,216 100,883,303 RGD:729947
G Tnk2 tyrosine kinase, non-receptor, 2 JBrowse link 11 71,348,726 71,388,520 RGD:1624291
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1624291
RGD:1600115
G Topaz1 testis and ovary specific PAZ domain containing 1 JBrowse link 8 131,788,816 131,843,668 RGD:1600115
RGD:1624291
G Trip13 thyroid hormone receptor interactor 13 JBrowse link 1 31,967,980 32,012,923 RGD:1624291
RGD:1600115
G Tssk1b testis-specific serine kinase 1B JBrowse link 11 87,239,410 87,240,833 RGD:1624291
RGD:1600115
G Tssk2 testis-specific serine kinase 2 JBrowse link 11 87,235,058 87,236,413 RGD:1624291
G Tssk4 testis-specific serine kinase 4 JBrowse link 15 34,322,182 34,331,187 RGD:1624291
RGD:1600115
G Ttc26 tetratricopeptide repeat domain 26 JBrowse link 4 66,090,178 66,147,998 RGD:1624291
G Ube2j1 ubiquitin-conjugating enzyme E2, J1 JBrowse link 5 48,274,387 48,292,699 RGD:1624291
G Xlr3a X-linked lymphocyte-regulated 3A JBrowse link 1 147,033,269 147,050,622 RGD:13792537
G Xlr4a X-linked lymphocyte-regulated 4A JBrowse link X 153,072,965 153,081,324 RGD:13792537
G Ybx2 Y box binding protein 2 JBrowse link 10 56,546,689 56,552,339 RGD:1624291
G Ythdc2 YTH domain containing 2 JBrowse link 1 182,072,386 182,141,399 RGD:1600115
RGD:1624291
G Zfp42 zinc finger protein 42 JBrowse link 16 52,016,590 52,026,346 RGD:1624291
G Zmynd15 zinc finger, MYND-type containing 15 JBrowse link 10 57,064,482 57,071,096 RGD:1624291
RGD:1600115
spermatid nucleus differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agfg1 ArfGAP with FG repeats 1 JBrowse link 9 88,607,508 88,663,486 RGD:1624291
RGD:1600115
G Gopc golgi associated PDZ and coiled-coil motif containing JBrowse link 20 33,471,355 33,521,281 RGD:1624291
G Hmgb2 high mobility group box 2 JBrowse link 16 36,077,615 36,080,191 RGD:1624291
G Mfsd14a major facilitator superfamily domain containing 14A JBrowse link 2 219,661,204 219,697,548 RGD:1624291
G Nectin2 nectin cell adhesion molecule 2 JBrowse link 1 80,631,449 80,666,617 RGD:1624291
RGD:1600115
G Pygo1 pygopus family PHD finger 1 JBrowse link 8 79,607,013 79,625,188 RGD:1624291
RGD:13792537
G Pygo2 pygopus family PHD finger 2 JBrowse link 2 188,757,167 188,762,285 RGD:1624291
RGD:13792537
G Tbpl1 TATA-box binding protein like 1 JBrowse link 1 23,977,154 24,002,512 RGD:1624291
RGD:1600115
G Tmf1 TATA element modulatory factor 1 JBrowse link 4 129,521,986 129,546,024 RGD:1624291
RGD:1600115
spermatid nucleus elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dmrtc2 DMRT-like family C2 JBrowse link 1 81,734,256 81,741,419 RGD:1624291
G H1f7 H1.7 linker histone JBrowse link 7 139,871,491 139,872,858 RGD:1624291
RGD:1600115
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:1624291
G Kdm3a lysine demethylase 3A JBrowse link 4 99,503,160 99,547,315 RGD:1624291
RGD:1600115
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1624291
RGD:13792537
RGD:1600115
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:1624291
RGD:1600115
G Fshr follicle stimulating hormone receptor JBrowse link 6 12,796,383 12,997,817 RGD:1624291
RGD:1600115
G H2bc1 H2B clustered histone 1 JBrowse link 17 43,423,111 43,423,580 RGD:1624291
RGD:1600115
G Piwil1 piwi-like RNA-mediated gene silencing 1 JBrowse link 12 31,608,641 31,629,961 RGD:1624291
RGD:1600115
G Psme4 proteasome activator subunit 4 JBrowse link 14 115,166,165 115,269,041 RGD:1624291
RGD:13792537
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1624291
RGD:1600115
G Sycp3 synaptonemal complex protein 3 JBrowse link 7 29,029,887 29,044,344 RGD:1624291
RGD:1600115
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1600115
RGD:1624291
G Tnp2 transition protein 2 JBrowse link 10 4,953,898 4,954,626 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18008
    cellular process 16139
      cellular process involved in reproduction in multicellular organism 414
        spermatid differentiation 196
          spermatid development + 188
Path 2
Term Annotations click to browse term
  biological_process 18008
    reproduction 1673
      reproductive process 1670
        multi-organism reproductive process 1157
          sexual reproduction 908
            gamete generation 748
              male gamete generation 588
                spermatogenesis 568
                  spermatid differentiation 196
                    spermatid development + 188
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.