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ONTOLOGY REPORT - ANNOTATIONS


Term:mucosa-associated lymphoid tissue development
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Accession:GO:0048537 term browser browse the term
Definition:The process whose specific outcome is the progression of mucosal-associated lymphoid tissue over time, from its formation to the mature structure. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes.
Synonyms:exact_synonym: mucosal-associated lymphoid tissue development
 narrow_synonym: BALT development;   GALT development;   NALT development;   bronchial-associated lymphoid tissue development;   gut-associated lymphoid tissue development;   nasopharyngeal-associated lymphoid tissue development


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mucosa-associated lymphoid tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-3 NK2 homeobox 3 ISO MGI:2448069 (MGI:1888604|PMID:10926756) RGD PMID:10926756 MGI:1888604 NCBI chr 1:263,361,238...263,371,043
Ensembl chr 1:263,367,266...263,370,219
JBrowse link
G Rorc RAR-related orphan receptor C ISO MGI:3026635 (MGI:3047471|PMID:15247480) RGD PMID:15247480 MGI:3047471 NCBI chr 2:195,612,471...195,636,797
Ensembl chr 2:195,617,021...195,637,630
JBrowse link
Peyer's patch development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO MGI:1857117|MGI:2683027 (MGI:3640719|PMID:10720488) RGD PMID:10720488 MGI:3640719 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 ISO MGI:1856936 (MGI:53759|PMID:5037658) RGD PMID:5037658 MGI:53759 NCBI chr 3:37,950,846...38,211,478
Ensembl chr 3:37,955,069...38,090,526
JBrowse link
G Ceacam1 CEA cell adhesion molecule 1 ISO MGI:3053071|MGI:5609428 (MGI:5451119|PMID:23123061) RGD PMID:23123061 MGI:5451119 NCBI chr 1:82,327,955...82,344,345
Ensembl chr 1:82,327,955...82,344,345
JBrowse link
G Id2 inhibitor of DNA binding 2 ISO MGI:98510 (MGI:3759740|PMID:17452521) RGD PMID:17452521 MGI:3759740 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO MGI:2158738 (MGI:68746|PMID:7923373) RGD PMID:7923373 MGI:68746 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Nkx2-3 NK2 homeobox 3 ISO MGI:2386680 (MGI:1858364|PMID:10790368) RGD PMID:10790368 MGI:1858364 NCBI chr 1:263,361,238...263,371,043
Ensembl chr 1:263,367,266...263,370,219
JBrowse link
G Rorc RAR-related orphan receptor C ISO (MGI:2686818|PMID:14691482) RGD PMID:14691482 MGI:2686818 NCBI chr 2:195,612,471...195,636,797
Ensembl chr 2:195,617,021...195,637,630
JBrowse link
G Stat5a signal transducer and activator of transcription 5A ISO MGI:103035 (MGI:3054293|PMID:15294943) RGD PMID:15294943 MGI:3054293 NCBI chr10:88,764,732...88,789,060
Ensembl chr10:88,764,732...88,789,057
JBrowse link
G Stat5b signal transducer and activator of transcription 5B IEA
ISO
GO_REF:0000107
MGI:103036 (MGI:3054293|PMID:15294943)
Ensembl
RGD
PMID:15294943 GO_REF:0000107, MGI:3054293 NCBI chr10:88,686,207...88,712,313
Ensembl chr10:88,686,207...88,754,829
JBrowse link
G Tcf3 transcription factor 3 ISO MGI:98510 (MGI:3759740|PMID:17452521) RGD PMID:17452521 MGI:3759740 NCBI chr 7:12,146,642...12,168,400
Ensembl chr 7:12,144,162...12,168,410
JBrowse link
G Tox thymocyte selection-associated high mobility group box ISO MGI:3773716 (MGI:4834966|PMID:20818394) RGD PMID:20818394 MGI:4834966 NCBI chr 5:19,892,698...20,189,721
Ensembl chr 5:19,892,698...20,189,721
JBrowse link
Peyer's patch morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Artn artemin ISO (MGI:3708043|PMID:17322904) RGD PMID:17322904 MGI:3708043 NCBI chr 5:136,759,717...136,765,036
Ensembl chr 5:136,759,717...136,762,986
JBrowse link
G Foxl1 forkhead box L1 ISO MGI:2180191 (MGI:2654286|PMID:12648490) RGD PMID:12648490 MGI:2654286 NCBI chr19:53,054,887...53,058,624
Ensembl chr19:53,055,745...53,056,770
JBrowse link
G Ret ret proto-oncogene ISO (MGI:3708043|PMID:17322904) RGD PMID:17322904 MGI:3708043 NCBI chr 4:150,202,170...150,249,196
Ensembl chr 4:150,202,058...150,244,372
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    immune system process 2840
      immune system development 1074
        hematopoietic or lymphoid organ development 1009
          mucosa-associated lymphoid tissue development 14
            Peyer's patch development + 14
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          system development 5279
            animal organ development 4033
              hematopoietic or lymphoid organ development 1009
                mucosa-associated lymphoid tissue development 14
                  Peyer's patch development + 14
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.