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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic camera-type eye morphogenesis
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Accession:GO:0048596 term browser browse the term
Definition:The process in which the anatomical structures of the eye are generated and organized during embryonic development.
Synonyms:broad_synonym: embryonic eye morphogenesis


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embryonic camera-type eye morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 ISO MGI:MGI:1857654 (MGI:MGI:1332362|PMID:10049573) RGD PMID:10049573 MGI:MGI:1332362 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:MGI:97490 (MGI:MGI:3807101|PMID:18653562) RGD PMID:18653562 MGI:MGI:3807101 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cryaa crystallin, alpha A ISO MGI:MGI:3777403 (MGI:MGI:3775669|PMID:18056999) RGD PMID:18056999 MGI:MGI:3775669 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187
JBrowse link
G Foxf2 forkhead box F2 ISO (MGI:MGI:5297296|PMID:22022403) RGD PMID:22022403 MGI:MGI:5297296 NCBI chr17:34,150,417...34,156,450 JBrowse link
G Fzd5 frizzled class receptor 5 ISO
IEA
(MGI:MGI:3826935|PMID:18832390)
GO_REF:0000107
RGD
Ensembl
PMID:18832390 GO_REF:0000107, MGI:MGI:3826935 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Ift122 intraflagellar transport 122 ISO MGI:MGI:3578529 (MGI:MGI:6094959|PMID:28778798) RGD PMID:28778798 MGI:MGI:6094959 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:MGI:2682066 (MGI:MGI:6094959|PMID:28778798) RGD PMID:28778798 MGI:MGI:6094959 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Kdm2b lysine demethylase 2B ISO (MGI:MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:2156191|MGI:MGI:4415718 (MGI:MGI:3823171|PMID:18985738), (MGI:MGI:4413396|PMID:19653321)
PMID:21873635
RGD PMID:18985738, PMID:19653321, PMID:21873635 MGI:MGI:3823171, MGI:MGI:4413396, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Pax6 paired box 6 ISO
IEA
MGI:MGI:1306784 (MGI:MGI:3807101|PMID:18653562)
GO_REF:0000107
RGD
Ensembl
PMID:18653562 GO_REF:0000107, MGI:MGI:3807101 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Sp1 Sp1 transcription factor ISO MGI:MGI:1277166 (MGI:MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:MGI:3717030 NCBI chr 7:144,014,173...144,044,635
Ensembl chr 7:144,014,173...144,044,629
JBrowse link
G Sp3 Sp3 transcription factor ISO MGI:MGI:98372 (MGI:MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:MGI:3717030 NCBI chr 3:59,644,579...59,689,011
Ensembl chr 3:59,646,015...59,688,692
JBrowse link
G Tbx2 T-box transcription factor 2 ISO (MGI:MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:MGI:3487212 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:2176682 (MGI:MGI:1313057|PMID:9811866) RGD PMID:9811866 MGI:MGI:1313057 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Th tyrosine hydroxylase ISO (MGI:MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:MGI:3617102 NCBI chr 1:216,073,034...216,080,287
Ensembl chr 1:216,073,031...216,080,287
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 ISO
IEA
MGI:MGI:1857515 (MGI:MGI:3790562|PMID:18436818)
GO_REF:0000107
RGD
Ensembl
PMID:18436818 GO_REF:0000107, MGI:MGI:3790562 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914
JBrowse link
closure of optic fissure term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 ISO (MGI:MGI:3719969|PMID:17609112) RGD PMID:17609112 MGI:MGI:3719969 NCBI chr 5:150,533,895...150,609,423
Ensembl chr 5:150,546,430...150,609,352
JBrowse link
G Sox11 SRY-box transcription factor 11 ISO
ISS
(MGI:MGI:3797299|PMID:18423449)
GO_REF:0000024
RGD
UniProt
PMID:18423449 GO_REF:0000024, MGI:MGI:3797299 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A ISO MGI:MGI:5469314 (MGI:MGI:5466629|PMID:23129809) RGD PMID:23129809 MGI:MGI:5466629 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 ISO
IEA
MGI:MGI:1861722 (MGI:MGI:3624188|PMID:16611695)
GO_REF:0000107
RGD
Ensembl
PMID:16611695 GO_REF:0000107, MGI:MGI:3624188 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 ISO
IEA
MGI:MGI:1353450 (MGI:MGI:3624188|PMID:16611695)
GO_REF:0000107
RGD
Ensembl
PMID:16611695 GO_REF:0000107, MGI:MGI:3624188 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:84247|PMID:8951055)
GO_REF:0000024
RGD
UniProt
PMID:8951055 GO_REF:0000024, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
optic cup structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha ISO
ISS
(MGI:MGI:4439459|PMID:20150232)
GO_REF:0000024
RGD
UniProt
PMID:20150232 GO_REF:0000024, MGI:MGI:4439459 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 ISO MGI:MGI:3521833 (MGI:MGI:3513737|PMID:15569927) RGD PMID:15569927 MGI:MGI:3513737 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:11850194) RGD PMID:11850194 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 ISO (MGI:MGI:2136715|PMID:11458394) RGD PMID:11458394 MGI:MGI:2136715 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
ISS
(MGI:MGI:4439459|PMID:20150232)
GO_REF:0000024
RGD
UniProt
PMID:20150232 GO_REF:0000024, MGI:MGI:4439459 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure morphogenesis 2877
        embryonic morphogenesis 690
          embryonic organ morphogenesis 336
            embryonic eye morphogenesis 39
              embryonic camera-type eye morphogenesis 30
                embryonic camera-type eye formation + 11
                optic vesicle morphogenesis + 2
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            animal organ development 4035
              sensory organ development 696
                eye development 462
                  camera-type eye development 413
                    embryonic camera-type eye development 43
                      embryonic camera-type eye morphogenesis 30
                        embryonic camera-type eye formation + 11
                        optic vesicle morphogenesis + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.