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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of muscle organ development
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Accession:GO:0048634 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of muscle development.


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regulation of muscle organ development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCANP1 dendritic cell associated nuclear protein ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:130,838,844...130,839,588
Ensembl chr 5:136,979,950...136,980,694
JBrowse link
G NEUROG1 neurogenin 1 ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:130,922,727...130,924,403
Ensembl chr 5:137,064,339...137,065,052
JBrowse link
G TIFAB TIFA inhibitor ISO (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:130,836,697...130,846,050
Ensembl chr 5:136,983,040...136,983,525
JBrowse link
negative regulation of cardiac muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF3 fibroblast growth factor 3 ISO (PMID:20702560) BHF-UCL PMID:20702560 NCBI chr11:64,905,658...64,915,175
Ensembl chr11:68,197,962...68,207,042
JBrowse link
G FGF8 fibroblast growth factor 8 ISO (PMID:20702560) BHF-UCL PMID:20702560 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916
JBrowse link
negative regulation of muscle organ development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL6 interleukin 6 ISO RGD PMID:19057004 RGD:2306938 NCBI chr 7:23,415,922...23,420,767 JBrowse link
G SFMBT1 Scm like with four mbt domains 1 ISO (PMID:23349461) UniProtKB PMID:23349461 NCBI chr 3:52,841,693...52,991,613
Ensembl chr 3:54,071,144...54,138,538
JBrowse link
negative regulation of skeletal muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRAS NRAS proto-oncogene, GTPase ISO (MGI:4839883|PMID:20534588) MGI PMID:20534588 MGI:4839883 NCBI chr 1:87,837,146...87,850,013
Ensembl chr 1:122,890,505...122,903,585
JBrowse link
G TGFB1 transforming growth factor beta 1 ISO (PMID:9770491) UniProtKB PMID:9770491 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973
JBrowse link
G TSC22D3 TSC22 domain family member 3 ISO (MGI:4838954|PMID:20124407) MGI PMID:20124407 MGI:4838954 NCBI chr  X:96,806,179...96,870,020
Ensembl chr  X:107,179,077...107,242,902
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 ISO (MGI:69156|PMID:7958419), (MGI:76047|PMID:7664846) MGI PMID:7664846, PMID:7958419 MGI:69156, MGI:76047 NCBI chr 7:19,761,041...19,765,665 JBrowse link
G USP19 ubiquitin specific peptidase 19 ISO (MGI:5315325|PMID:21971047) UniProt PMID:21971047 MGI:5315325 NCBI chr 3:49,032,373...49,045,238
Ensembl chr 3:50,100,216...50,125,112
JBrowse link
G USP2 ubiquitin specific peptidase 2 ISO PMID:10938131 UniProt PMID:10938131 RGD:634247 NCBI chr11:114,196,725...114,223,411
Ensembl chr11:118,124,350...118,150,868
JBrowse link
G YBX3 Y-box binding protein 3 ISO (MGI:3808638|PMID:18676817) MGI PMID:18676817 MGI:3808638 NCBI chr12:10,728,049...10,752,267
Ensembl chr12:10,996,380...11,018,172
JBrowse link
negative regulation of striated muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDNF brain derived neurotrophic factor ISO RGD PMID:16723531 RGD:1580249 NCBI chr11:27,618,322...27,687,661
Ensembl chr11:27,520,312...27,589,239
JBrowse link
G BMP4 bone morphogenetic protein 4 ISO (PMID:14749725) MGI PMID:14749725 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 ISO (MGI:3656361|PMID:16936075) MGI PMID:16936075 MGI:3656361 NCBI chr 4:100,552,959...100,674,156
Ensembl chr 4:111,125,312...111,245,980
JBrowse link
G LUC7L LUC7 like ISO (MGI:3055693|PMID:15474286) MGI PMID:15474286 MGI:3055693 Ensembl chr16:177,857...217,519 JBrowse link
G SIRT2 sirtuin 2 ISO (PMID:12887892) UniProtKB PMID:12887892 NCBI chr19:35,984,453...36,005,582
Ensembl chr19:44,533,965...44,554,799
JBrowse link
G SOX15 SRY-box transcription factor 15 ISO (MGI:1858709|PMID:10821863) MGI PMID:10821863 MGI:1858709 NCBI chr17:7,619,804...7,621,791
Ensembl chr17:7,606,086...7,608,632
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 ISO (MGI:1201268|PMID:9520323) UniProt PMID:9520323 MGI:1201268 NCBI chr 7:19,761,041...19,765,665 JBrowse link
negative regulation of ureter smooth muscle cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO (MGI:2388350|PMID:12399320) UniProt PMID:12399320 MGI:2388350 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
positive regulation of cardiac muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CREB1 cAMP responsive element binding protein 1 ISO (MGI:5571433|PMID:24364879) MGI PMID:24364879 MGI:5571433 NCBI chr2B:94,762,796...94,836,304
Ensembl chr2B:212,891,261...212,958,130
JBrowse link
G ERBB3 erb-b2 receptor tyrosine kinase 3 ISO (MGI:5571433|PMID:24364879) MGI PMID:24364879 MGI:5571433 NCBI chr12:32,811,533...32,834,958
Ensembl chr12:33,063,434...33,084,994
JBrowse link
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 ISO (MGI:3778600|PMID:18178581) UniProt PMID:18178581 MGI:3778600 NCBI chr11:61,905,722...61,922,227
Ensembl chr11:65,228,713...65,245,429
JBrowse link
G BCL2 BCL2 apoptosis regulator ISO (MGI:1928555|PMID:11146504) MGI PMID:11146504 MGI:1928555 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G LMOD3 leiomodin 3 ISO (PMID:25250574) UniProtKB PMID:25250574 NCBI chr 3:69,042,870...69,058,704
Ensembl chr 3:70,410,288...70,424,702
JBrowse link
G MYOG myogenin ISO (MGI:62381|PMID:8393145) UniProt PMID:8393145 MGI:62381 NCBI chr 1:178,684,933...178,687,971
Ensembl chr 1:182,979,700...182,982,611
JBrowse link
G SHOX2 short stature homeobox 2 ISO (MGI:4946446|PMID:21156168) BHF-UCL PMID:21156168 MGI:4946446 NCBI chr 3:155,138,969...155,149,619
Ensembl chr 3:163,190,284...163,199,239
JBrowse link
positive regulation of skeletal muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDON cell adhesion associated, oncogene regulated ISO (MGI:3522534|PMID:15572127) MGI PMID:15572127 MGI:3522534 NCBI chr11:120,772,160...120,877,529
Ensembl chr11:124,685,084...124,786,091
JBrowse link
G CTNNB1 catenin beta 1 ISO (MGI:5619733|PMID:23460868) CACAO PMID:23460868 MGI:5619733 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G FLOT1 flotillin 1 ISO (PMID:24046456)
(MGI:5634880|PMID:24046456)
UniProtKB
UniProt
PMID:24046456 MGI:5634880 NCBI chr 6:30,472,839...30,487,809
Ensembl chr 6:31,342,033...31,357,559
JBrowse link
G HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase ISO RGD PMID:19388010 RGD:2317940 NCBI chr 5:39,936,630...39,961,519
Ensembl chr 5:40,548,919...40,573,785
JBrowse link
G MEF2C myocyte enhancer factor 2C ISO (PMID:9770491) UniProtKB PMID:9770491 NCBI chr 5:26,480,489...26,650,813
Ensembl chr 5:26,681,700...26,786,426
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 ISO (MGI:5569711|PMID:23926128) MGI PMID:23926128 MGI:5569711 NCBI chr 5:69,581,748...69,620,721
Ensembl chr 5:74,627,830...74,666,505
JBrowse link
G SHH sonic hedgehog signaling molecule ISO (MGI:1929969|PMID:11171399) MGI PMID:11171399 MGI:1929969 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G USP2 ubiquitin specific peptidase 2 ISO PMID:10938131 UniProt PMID:10938131 RGD:634247 NCBI chr11:114,196,725...114,223,411
Ensembl chr11:118,124,350...118,150,868
JBrowse link
G WNT3A Wnt family member 3A ISO (MGI:2179189|PMID:11856745) CACAO PMID:11856745 MGI:2179189 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469
JBrowse link
positive regulation of skeletal muscle tissue growth term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 ISO (MGI:3778600|PMID:18178581), (MGI:5554485|PMID:24234654) UniProt PMID:18178581, PMID:24234654 MGI:3778600, MGI:5554485 NCBI chr11:61,905,722...61,922,227
Ensembl chr11:65,228,713...65,245,429
JBrowse link
G ADRB2 adrenoceptor beta 2 ISO RGD PMID:16177600 RGD:1598747 NCBI chr 5:144,259,756...144,398,421
Ensembl chr 5:150,267,554...150,315,892
JBrowse link
G DLL1 delta like canonical Notch ligand 1 ISO (MGI:5608606|PMID:25220152) UniProt PMID:25220152 MGI:5608606 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759
JBrowse link
G IGF2 insulin like growth factor 2 ISO (MGI:6120647|PMID:29440408) UniProt PMID:29440408 MGI:6120647 NCBI chr11:2,170,190...2,199,442
Ensembl chr11:2,202,743...2,228,890
JBrowse link
G MTM1 myotubularin 1 ISO (MGI:5510937|PMID:23695157) MGI PMID:23695157 MGI:5510937 NCBI chr  X:140,218,742...140,323,495
Ensembl chr  X:150,174,758...150,255,381
JBrowse link
G NACA nascent polypeptide associated complex subunit alpha ISO (MGI:4867362|PMID:21071677) BHF-UCL PMID:21071677 MGI:4867362 NCBI chr12:32,180,823...32,195,645
Ensembl chr12:32,434,366...32,447,510
JBrowse link
G RPS6KB1 ribosomal protein S6 kinase B1 ISO RGD PMID:16408196 RGD:1643018 NCBI chr17:53,958,807...54,014,752
Ensembl chr17:58,799,069...58,853,653
JBrowse link
positive regulation of striated muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GJA1 gap junction protein alpha 1 ISO (MGI:3513707|PMID:15601660) MGI PMID:15601660 MGI:3513707 NCBI chr 6:119,213,513...119,227,617 JBrowse link
G MRTFB myocardin related transcription factor B ISO (PMID:14565952) UniProtKB PMID:14565952 NCBI chr16:12,999,165...13,195,012
Ensembl chr16:14,493,351...14,613,860
JBrowse link
positive regulation of ureter smooth muscle cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO (MGI:2388350|PMID:12399320) UniProt PMID:12399320 MGI:2388350 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
regulation of cardiac muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G JPH2 junctophilin 2 ISO (MGI:1861885|PMID:10949023) UniProt PMID:10949023 MGI:1861885 NCBI chr20:40,439,975...40,517,438 JBrowse link
regulation of skeletal muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 ISO PMID:12968668 UniProt PMID:12968668 RGD:8554636 NCBI chr2B:44,994,175...45,133,490
Ensembl chr2B:162,234,823...162,297,805
JBrowse link
G MEGF10 multiple EGF like domains 10 ISO (PMID:22101682) UniProtKB PMID:22101682 NCBI chr 5:122,639,155...122,877,324
Ensembl chr 5:128,466,095...128,641,043
JBrowse link
G TCF7L2 transcription factor 7 like 2 ISO (MGI:4879035|PMID:21177349) MGI PMID:21177349 MGI:4879035 NCBI chr10:109,541,524...109,759,499
Ensembl chr10:112,978,167...113,192,281
JBrowse link
G WNT10B Wnt family member 10B ISO (MGI:3581945|PMID:15673614) MGI PMID:15673614 MGI:3581945 NCBI chr12:39,771,163...39,785,411
Ensembl chr12:40,659,106...40,665,734
JBrowse link
regulation of striated muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPF centromere protein F ISO (MGI:1339480|PMID:10373470) MGI PMID:10373470 MGI:1339480 NCBI chr 1:190,170,414...190,231,478
Ensembl chr 1:195,024,877...195,086,518
JBrowse link
G LOX lysyl oxidase ISO (MGI:5634219|PMID:25715398) MGI PMID:25715398 MGI:5634219 NCBI chr 5:117,450,833...117,464,957
Ensembl chr 5:123,234,662...123,248,717
JBrowse link
G SMAD3 SMAD family member 3 ISO (MGI:2153314|PMID:11711431) MGI PMID:11711431 MGI:2153314 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185
JBrowse link
G TGFB1 transforming growth factor beta 1 ISO (MGI:2153314|PMID:11711431) MGI PMID:11711431 MGI:2153314 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12567
    regulation of biological process 8677
      regulation of developmental process 2405
        regulation of muscle organ development 51
          negative regulation of muscle organ development + 17
          positive regulation of muscle organ development + 24
          regulation of somitomeric trunk muscle development + 0
          regulation of striated muscle tissue development + 46
          regulation of ureter smooth muscle cell differentiation + 1
Path 2
Term Annotations click to browse term
  biological_process 12567
    developmental process 5840
      anatomical structure development 5453
        multicellular organism development 4985
          system development 4689
            animal organ development 3618
              muscle organ development 318
                regulation of muscle organ development 51
                  negative regulation of muscle organ development + 17
                  positive regulation of muscle organ development + 24
                  regulation of somitomeric trunk muscle development + 0
                  regulation of striated muscle tissue development + 46
                  regulation of ureter smooth muscle cell differentiation + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.