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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of muscle organ development
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Accession:GO:0048634 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of muscle development.


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regulation of muscle organ development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCANP1 dendritic cell associated nuclear protein IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,444,214...135,447,348
Ensembl chr 5:135,444,214...135,447,348
JBrowse link
G NEUROG1 neurogenin 1 IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,534,282...135,535,964
Ensembl chr 5:135,534,282...135,535,964
JBrowse link
G TIFAB TIFA inhibitor IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,444,226...135,452,351
Ensembl chr 5:135,444,226...135,452,351
JBrowse link
negative regulation of cardiac muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF3 fibroblast growth factor 3 IMP (PMID:20702560) BHF-UCL PMID:20702560 NCBI chr11:69,809,968...69,819,416
Ensembl chr11:69,809,968...69,819,416
JBrowse link
G FGF8 fibroblast growth factor 8 IMP (PMID:20702560) BHF-UCL PMID:20702560 NCBI chr10:101,770,109...101,780,369
Ensembl chr10:101,770,130...101,780,369
JBrowse link
negative regulation of muscle organ development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL6 interleukin 6 ISO RGD PMID:19057004 RGD:2306938 NCBI chr 7:22,725,889...22,732,002
Ensembl chr 7:22,725,884...22,732,002
JBrowse link
G SFMBT1 Scm like with four mbt domains 1 IMP (PMID:23349461) UniProtKB PMID:23349461 NCBI chr 3:52,899,209...53,046,655
Ensembl chr 3:52,903,572...53,046,750
JBrowse link
negative regulation of skeletal muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRAS NRAS proto-oncogene, GTPase ISO (MGI:4839883|PMID:20534588) MGI PMID:20534588 MGI:4839883 NCBI chr 1:114,704,469...114,716,771
Ensembl chr 1:114,704,469...114,716,771
JBrowse link
G TGFB1 transforming growth factor beta 1 IDA (PMID:9770491) UniProtKB PMID:9770491 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
G TSC22D3 TSC22 domain family member 3 ISO (MGI:4838954|PMID:20124407) MGI PMID:20124407 MGI:4838954 NCBI chr  X:107,713,221...107,777,329
Ensembl chr  X:107,713,221...107,777,342
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:19,113,047...19,117,636
Ensembl chr 7:19,020,991...19,117,636
JBrowse link
G USP19 ubiquitin specific peptidase 19 ISS UniProtKB GO_REF:0000024 NCBI chr 3:49,108,050...49,120,933
Ensembl chr 3:49,108,046...49,120,938
JBrowse link
G USP2 ubiquitin specific peptidase 2 ISO PMID:10938131 UniProt PMID:10938131 RGD:634247 NCBI chr11:119,355,215...119,381,690
Ensembl chr11:119,355,215...119,381,711
JBrowse link
G YBX3 Y-box binding protein 3 IEA Ensembl GO_REF:0000107 NCBI chr12:10,699,084...10,723,442
Ensembl chr12:10,699,089...10,723,323
JBrowse link
negative regulation of striated muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDNF brain derived neurotrophic factor ISO RGD PMID:16723531 RGD:1580249 NCBI chr11:27,654,893...27,722,030
Ensembl chr11:27,654,893...27,722,058
JBrowse link
G BMP4 bone morphogenetic protein 4 IDA (PMID:14749725) MGI PMID:14749725 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:108,047,548...108,168,932
Ensembl chr 4:108,047,545...108,168,956
JBrowse link
G LUC7L LUC7 like IEA Ensembl GO_REF:0000107 NCBI chr16:188,969...229,449
Ensembl chr16:188,969...229,463
JBrowse link
G SIRT2 sirtuin 2 IDA (PMID:12887892) UniProtKB PMID:12887892 NCBI chr19:38,878,555...38,899,733
Ensembl chr19:38,878,555...38,899,862
JBrowse link
G SOX15 SRY-box transcription factor 15 ISS (PMID:10821863) BHF-UCL PMID:10821863 NCBI chr17:7,588,178...7,590,094
Ensembl chr17:7,588,178...7,590,094
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 ISO (MGI:1201268|PMID:9520323) UniProt PMID:9520323 MGI:1201268 NCBI chr 7:19,113,047...19,117,636
Ensembl chr 7:19,020,991...19,117,636
JBrowse link
negative regulation of ureter smooth muscle cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISS UniProtKB GO_REF:0000024 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
positive regulation of cardiac muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CREB1 cAMP responsive element binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:207,529,943...207,605,988
Ensembl chr 2:207,529,737...207,605,988
JBrowse link
G ERBB3 erb-b2 receptor tyrosine kinase 3 IEA Ensembl GO_REF:0000107 NCBI chr12:56,080,108...56,103,505
Ensembl chr12:56,076,799...56,103,505
JBrowse link
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 IEA Ensembl GO_REF:0000107 NCBI chr11:66,546,395...66,563,334
Ensembl chr11:66,546,395...66,563,334
JBrowse link
G BCL2 BCL2 apoptosis regulator IEA Ensembl GO_REF:0000107 NCBI chr18:63,123,346...63,320,280
Ensembl chr18:63,123,346...63,320,128
JBrowse link
G LMOD3 leiomodin 3 IMP (PMID:25250574) UniProtKB PMID:25250574 NCBI chr 3:69,106,065...69,122,595
Ensembl chr 3:69,106,872...69,123,032
Ensembl chr 3:69,106,872...69,123,032
JBrowse link
G MYF5 myogenic factor 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:80,716,912...80,719,671
Ensembl chr12:80,716,912...80,719,671
JBrowse link
G MYF6 myogenic factor 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:80,707,634...80,709,474
Ensembl chr12:80,707,634...80,709,474
JBrowse link
G MYOD1 myogenic differentiation 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:17,719,571...17,722,136
Ensembl chr11:17,719,571...17,722,136
JBrowse link
G MYOG myogenin ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 1:203,083,129...203,086,012
Ensembl chr 1:203,083,129...203,086,012
JBrowse link
G NIBAN2 niban apoptosis regulator 2 ISS UniProtKB GO_REF:0000024 NCBI chr 9:127,505,339...127,579,031
Ensembl chr 9:127,505,339...127,578,989
JBrowse link
G SHOX2 short stature homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:158,095,905...158,106,420
Ensembl chr 3:158,095,954...158,106,503
JBrowse link
positive regulation of skeletal muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDON cell adhesion associated, oncogene regulated IEA Ensembl GO_REF:0000107 NCBI chr11:125,956,813...126,063,335
Ensembl chr11:125,955,796...126,063,335
JBrowse link
G CTNNB1 catenin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G FLOT1 flotillin 1 IMP (PMID:24046456) UniProtKB PMID:24046456 NCBI chr 6:30,727,709...30,742,847
Ensembl chr 6:30,727,709...30,742,732
JBrowse link
G HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase IEA Ensembl GO_REF:0000107 NCBI chr 5:75,336,334...75,362,116
Ensembl chr 5:75,336,329...75,362,101
JBrowse link
G MEF2C myocyte enhancer factor 2C IMP (PMID:9770491) UniProtKB PMID:9770491 NCBI chr 5:88,717,117...88,904,105
Ensembl chr 5:88,717,117...88,904,257
JBrowse link
G MIR214 microRNA 214 ISO (MGI:4839883|PMID:20534588) MGI PMID:20534588 MGI:4839883 NCBI chr 1:172,138,798...172,138,907
Ensembl chr 1:172,138,798...172,138,907
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:40,759,379...40,798,195
Ensembl chr 5:40,759,379...40,798,374
JBrowse link
G SHH sonic hedgehog signaling molecule IEA Ensembl GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
G USP2 ubiquitin specific peptidase 2 ISO PMID:10938131 UniProt PMID:10938131 RGD:634247 NCBI chr11:119,355,215...119,381,690
Ensembl chr11:119,355,215...119,381,711
JBrowse link
G WNT3A Wnt family member 3A IEA Ensembl GO_REF:0000107 NCBI chr 1:228,006,998...228,067,113
Ensembl chr 1:228,006,998...228,061,271
JBrowse link
positive regulation of skeletal muscle tissue growth term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 IEA
ISS
Ensembl
UniProtKB
GO_REF:0000024, GO_REF:0000107 NCBI chr11:66,546,395...66,563,334
Ensembl chr11:66,546,395...66,563,334
JBrowse link
G ADRB2 adrenoceptor beta 2 ISO RGD PMID:16177600 RGD:1598747 NCBI chr 5:148,826,611...148,828,623
Ensembl chr 5:148,825,245...148,828,687
JBrowse link
G DLL1 delta like canonical Notch ligand 1 ISS UniProtKB GO_REF:0000024 NCBI chr 6:170,282,200...170,291,078
Ensembl chr 6:170,282,206...170,306,565
JBrowse link
G IGF2 insulin like growth factor 2 ISO (MGI:6120647|PMID:29440408) UniProt PMID:29440408 MGI:6120647 NCBI chr11:2,129,112...2,149,603
Ensembl chr11:2,129,112...2,141,238
JBrowse link
G MTM1 myotubularin 1 ISO (MGI:5510937|PMID:23695157) MGI PMID:23695157 MGI:5510937 NCBI chr  X:150,562,658...150,673,143
Ensembl chr  X:150,568,619...150,673,322
Ensembl chr  X:150,568,619...150,673,322
JBrowse link
G NACA nascent polypeptide associated complex subunit alpha ISS BHF-UCL GO_REF:0000024 NCBI chr12:56,712,427...56,725,299
Ensembl chr12:56,712,427...56,731,628
Ensembl chr12:56,712,427...56,731,628
JBrowse link
G RPS6KB1 ribosomal protein S6 kinase B1 ISO RGD PMID:16408196 RGD:1643018 NCBI chr17:59,893,121...59,950,574
Ensembl chr17:59,893,046...59,950,574
JBrowse link
positive regulation of striated muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GJA1 gap junction protein alpha 1 ISO (MGI:3513707|PMID:15601660) MGI PMID:15601660 MGI:3513707 NCBI chr 6:121,435,646...121,449,727
Ensembl chr 6:121,435,595...121,449,727
JBrowse link
G MRTFB myocardin related transcription factor B IDA (PMID:14565952) UniProtKB PMID:14565952 NCBI chr16:14,071,062...14,266,779
Ensembl chr16:14,071,321...14,266,773
Ensembl chr16:14,071,321...14,266,773
JBrowse link
positive regulation of ureter smooth muscle cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISS UniProtKB GO_REF:0000024 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
regulation of cardiac muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G JPH2 junctophilin 2 IEA Ensembl GO_REF:0000107 NCBI chr20:44,106,590...44,187,946
Ensembl chr20:44,111,695...44,187,578
Ensembl chr20:44,111,695...44,187,578
JBrowse link
regulation of skeletal muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 ISO PMID:12968668 UniProt PMID:12968668 RGD:8554636 NCBI chr 2:157,736,446...157,876,330
Ensembl chr 2:157,736,444...157,876,330
Ensembl chr 2:157,736,444...157,876,330
JBrowse link
G MEGF10 multiple EGF like domains 10 IMP (PMID:22101682) UniProtKB PMID:22101682 NCBI chr 5:127,229,519...127,461,222
Ensembl chr 5:127,290,796...127,465,737
JBrowse link
G TCF7L2 transcription factor 7 like 2 ISO (MGI:4879035|PMID:21177349) MGI PMID:21177349 MGI:4879035 NCBI chr10:112,950,247...113,167,678
Ensembl chr10:112,950,247...113,167,678
JBrowse link
G WNT10B Wnt family member 10B IEA Ensembl GO_REF:0000107 NCBI chr12:48,965,340...48,979,587
Ensembl chr12:48,965,340...48,971,735
JBrowse link
regulation of striated muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPF centromere protein F ISS (PMID:10373470) UniProtKB PMID:10373470 NCBI chr 1:214,603,195...214,664,571
Ensembl chr 1:214,603,195...214,664,571
JBrowse link
G LOX lysyl oxidase IEA Ensembl GO_REF:0000107 NCBI chr 5:122,063,195...122,078,259
Ensembl chr 5:122,063,195...122,078,360
JBrowse link
G MTPN myotrophin NAS (PMID:12031792) UniProtKB PMID:12031792 NCBI chr 7:135,926,760...135,977,359
Ensembl chr 7:135,926,760...135,977,359
JBrowse link
G SMAD3 SMAD family member 3 IEA Ensembl GO_REF:0000107 NCBI chr15:67,065,602...67,195,195
Ensembl chr15:67,063,763...67,195,169
JBrowse link
G TGFB1 transforming growth factor beta 1 ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18673
    regulation of biological process 12643
      regulation of developmental process 2844
        regulation of muscle organ development 57
          negative regulation of muscle organ development + 17
          positive regulation of muscle organ development + 29
          regulation of somitomeric trunk muscle development + 0
          regulation of striated muscle tissue development + 52
          regulation of ureter smooth muscle cell differentiation + 1
Path 2
Term Annotations click to browse term
  biological_process 18673
    developmental process 7467
      anatomical structure development 6874
        multicellular organism development 6347
          system development 5750
            animal organ development 4412
              muscle organ development 401
                regulation of muscle organ development 57
                  negative regulation of muscle organ development + 17
                  positive regulation of muscle organ development + 29
                  regulation of somitomeric trunk muscle development + 0
                  regulation of striated muscle tissue development + 52
                  regulation of ureter smooth muscle cell differentiation + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.