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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of muscle organ development
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Accession:GO:0048634 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of muscle development.


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regulation of muscle organ development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr13:56,250,478...56,252,180
Ensembl chr13:56,250,478...56,252,163
JBrowse link
G Tifab TRAF-interacting protein with forkhead-associated domain, family member B ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr13:56,173,703...56,179,002
Ensembl chr13:56,173,704...56,178,885
JBrowse link
negative regulation of cardiac muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf3 fibroblast growth factor 3 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 7:144,838,612...144,843,348
Ensembl chr 7:144,838,083...144,844,436
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr19:45,736,491...45,742,941
Ensembl chr19:45,736,798...45,742,915
JBrowse link
negative regulation of muscle organ development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il6 interleukin 6 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 5:30,013,114...30,019,975
Ensembl chr 5:30,013,114...30,019,981
JBrowse link
G Sfmbt1 Scm-like with four mbt domains 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr14:30,714,849...30,822,721
Ensembl chr14:30,714,849...30,822,721
JBrowse link
negative regulation of skeletal muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nras neuroblastoma ras oncogene IGI
IDA
(MGI:4839883|PMID:20534588) MGI PMID:20534588 MGI:4839883 NCBI chr 3:103,058,285...103,067,914
Ensembl chr 3:103,058,285...103,067,914
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 7:25,687,002...25,705,077
Ensembl chr 7:25,687,002...25,705,077
JBrowse link
G Tsc22d3 TSC22 domain family, member 3 IDA (MGI:4838954|PMID:20124407) MGI PMID:20124407 MGI:4838954 NCBI chr  X:140,539,528...140,600,522
Ensembl chr  X:140,539,528...140,600,659
JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 IDA (MGI:69156|PMID:7958419), (MGI:76047|PMID:7664846) MGI PMID:7664846, PMID:7958419 MGI:69156, MGI:76047 NCBI chr12:33,957,671...33,959,831
Ensembl chr12:33,957,671...33,959,829
JBrowse link
G Usp19 ubiquitin specific peptidase 19 IMP (MGI:5315325|PMID:21971047) UniProt PMID:21971047 MGI:5315325 NCBI chr 9:108,490,607...108,502,337
Ensembl chr 9:108,490,602...108,502,337
JBrowse link
G Usp2 ubiquitin specific peptidase 2 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 9:44,067,021...44,095,627
Ensembl chr 9:44,067,021...44,095,627
JBrowse link
G Ybx3 Y box protein 3 IDA (MGI:3808638|PMID:18676817) MGI PMID:18676817 MGI:3808638 NCBI chr 6:131,364,858...131,388,450
Ensembl chr 6:131,364,855...131,388,476
JBrowse link
negative regulation of striated muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 2:109,674,700...109,727,043
Ensembl chr 2:109,674,700...109,727,007
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO MGI GO_REF:0000008, MGI:2154458 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Hdac5 histone deacetylase 5 TAS (MGI:3687879|PMID:12711221) UniProt PMID:12711221 MGI:3687879 NCBI chr11:102,195,747...102,230,172
Ensembl chr11:102,194,432...102,230,166
JBrowse link
G Hdac7 histone deacetylase 7 TAS (MGI:3687879|PMID:12711221) UniProt PMID:12711221 MGI:3687879 NCBI chr15:97,792,661...97,844,502
Ensembl chr15:97,792,664...97,844,502
JBrowse link
G Hdac9 histone deacetylase 9 TAS (MGI:3687879|PMID:12711221) UniProt PMID:12711221 MGI:3687879 NCBI chr12:34,047,580...34,917,095
Ensembl chr12:34,047,580...34,917,095
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IDA (MGI:3656361|PMID:16936075) MGI PMID:16936075 MGI:3656361 NCBI chr 3:131,110,297...131,224,357
Ensembl chr 3:131,110,471...131,224,356
JBrowse link
G Luc7l Luc7-like IDA (MGI:3055693|PMID:15474286) MGI PMID:15474286 MGI:3055693 NCBI chr17:26,252,899...26,285,510
Ensembl chr17:26,252,896...26,285,504
JBrowse link
G Sirt2 sirtuin 2 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 7:28,766,752...28,788,665
Ensembl chr 7:28,766,735...28,788,661
JBrowse link
G Sox15 SRY (sex determining region Y)-box 15 IDA (MGI:1858709|PMID:10821863) MGI PMID:10821863 MGI:1858709 NCBI chr11:69,655,037...69,656,727
Ensembl chr11:69,655,314...69,656,727
JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 IDA (MGI:1201268|PMID:9520323) UniProt PMID:9520323 MGI:1201268 NCBI chr12:33,957,671...33,959,831
Ensembl chr12:33,957,671...33,959,829
JBrowse link
negative regulation of ureter smooth muscle cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog IDA (MGI:2388350|PMID:12399320) UniProt PMID:12399320 MGI:2388350 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
positive regulation of cardiac muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Creb1 cAMP responsive element binding protein 1 IMP (MGI:5571433|PMID:24364879) MGI PMID:24364879 MGI:5571433 NCBI chr 1:64,532,794...64,604,548
Ensembl chr 1:64,532,645...64,604,548
JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 IMP (MGI:5571433|PMID:24364879) MGI PMID:24364879 MGI:5571433 NCBI chr10:128,567,523...128,589,635
Ensembl chr10:128,567,523...128,589,652
JBrowse link
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 IMP (MGI:3778600|PMID:18178581) UniProt PMID:18178581 MGI:3778600 NCBI chr19:4,861,216...4,877,909
Ensembl chr19:4,861,216...4,877,909
JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 IMP (MGI:1928555|PMID:11146504) MGI PMID:11146504 MGI:1928555 NCBI chr 1:106,538,176...106,714,290
Ensembl chr 1:106,538,178...106,714,274
JBrowse link
G Lmod3 leiomodin 3 (fetal) ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 6:97,238,530...97,253,217
Ensembl chr 6:97,238,534...97,252,759
JBrowse link
G Myf5 myogenic factor 5 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:107,482,908...107,486,927
Ensembl chr10:107,482,908...107,486,134
JBrowse link
G Myf6 myogenic factor 6 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:107,492,848...107,494,723
Ensembl chr10:107,492,853...107,494,737
JBrowse link
G Myod1 myogenic differentiation 1 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:46,376,474...46,379,092
Ensembl chr 7:46,376,474...46,379,099
JBrowse link
G Myog myogenin IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:62381|PMID:8393145)
GO_Central
UniProt
PMID:8393145, PMID:21873635 MGI:6201960, MGI:62381 NCBI chr 1:134,290,004...134,292,548
Ensembl chr 1:134,289,989...134,292,548
JBrowse link
G Shox2 short stature homeobox 2 IMP (MGI:4946446|PMID:21156168) BHF-UCL PMID:21156168 MGI:4946446 NCBI chr 3:66,971,723...66,981,771
Ensembl chr 3:66,971,727...66,981,771
JBrowse link
positive regulation of skeletal muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion molecule-related/down-regulated by oncogenes IMP (MGI:3522534|PMID:15572127) MGI PMID:15572127 MGI:3522534 NCBI chr 9:35,421,528...35,507,652
Ensembl chr 9:35,421,128...35,507,652
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 IMP (MGI:5619733|PMID:23460868) CACAO PMID:23460868 MGI:5619733 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Flot1 flotillin 1 ISO
IMP
(MGI:5634880|PMID:24046456) MGI
UniProt
PMID:24046456 GO_REF:0000096, MGI:4834177, MGI:5634880 NCBI chr17:35,823,320...35,832,789
Ensembl chr17:35,823,230...35,832,791
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-Coenzyme A reductase ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr13:96,648,962...96,670,936
Ensembl chr13:96,648,967...96,670,936
JBrowse link
G Mef2c myocyte enhancer factor 2C ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr13:83,504,017...83,667,079
Ensembl chr13:83,504,034...83,667,080
JBrowse link
G Mir214 microRNA 214 IMP
IGI
(MGI:4839883|PMID:20534588) MGI PMID:20534588 MGI:4839883 NCBI chr 1:162,223,368...162,223,477
Ensembl chr 1:162,223,368...162,223,477
JBrowse link
G Prkaa1 protein kinase, AMP-activated, alpha 1 catalytic subunit IMP (MGI:5569711|PMID:23926128) MGI PMID:23926128 MGI:5569711 NCBI chr15:5,143,861...5,181,899
Ensembl chr15:5,143,861...5,181,899
JBrowse link
G Shh sonic hedgehog IMP (MGI:1929969|PMID:11171399) MGI PMID:11171399 MGI:1929969 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Usp2 ubiquitin specific peptidase 2 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 9:44,067,021...44,095,627
Ensembl chr 9:44,067,021...44,095,627
JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A IMP (MGI:2179189|PMID:11856745) CACAO PMID:11856745 MGI:2179189 NCBI chr11:59,248,036...59,290,751
Ensembl chr11:59,248,033...59,290,752
JBrowse link
positive regulation of skeletal muscle tissue growth term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 IMP (MGI:3778600|PMID:18178581), (MGI:5554485|PMID:24234654) UniProt PMID:18178581, PMID:24234654 MGI:3778600, MGI:5554485 NCBI chr19:4,861,216...4,877,909
Ensembl chr19:4,861,216...4,877,909
JBrowse link
G Adrb2 adrenergic receptor, beta 2 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr18:62,177,713...62,179,981
Ensembl chr18:62,177,816...62,179,959
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IMP (MGI:5608606|PMID:25220152) UniProt PMID:25220152 MGI:5608606 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
G Igf2 insulin-like growth factor 2 IMP (MGI:6120647|PMID:29440408) UniProt PMID:29440408 MGI:6120647 NCBI chr 7:142,650,768...142,666,816
Ensembl chr 7:142,650,766...142,666,816
JBrowse link
G Mtm1 X-linked myotubular myopathy gene 1 IMP (MGI:5510937|PMID:23695157) MGI PMID:23695157 MGI:5510937 NCBI chr  X:71,210,767...71,315,413
Ensembl chr  X:71,210,767...71,315,691
JBrowse link
G Naca nascent polypeptide-associated complex alpha polypeptide IMP (MGI:4867362|PMID:21071677) BHF-UCL PMID:21071677 MGI:4867362 NCBI chr10:128,035,346...128,048,637
Ensembl chr10:128,035,575...128,048,637
JBrowse link
G Rps6kb1 ribosomal protein S6 kinase, polypeptide 1 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr11:86,498,869...86,544,885
Ensembl chr11:86,498,871...86,544,805
JBrowse link
positive regulation of striated muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 IMP (MGI:3513707|PMID:15601660) MGI PMID:15601660 MGI:3513707 NCBI chr10:56,377,300...56,390,419
Ensembl chr10:56,377,330...56,402,513
JBrowse link
G Mrtfb myocardin related transcription factor B ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr16:13,256,056...13,417,529
Ensembl chr16:13,256,481...13,417,529
JBrowse link
positive regulation of ureter smooth muscle cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog IMP (MGI:2388350|PMID:12399320) UniProt PMID:12399320 MGI:2388350 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
regulation of cardiac muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jph2 junctophilin 2 IMP (MGI:1861885|PMID:10949023) UniProt PMID:10949023 MGI:1861885 NCBI chr 2:163,336,242...163,398,049
Ensembl chr 2:163,336,242...163,397,993
JBrowse link
regulation of skeletal muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 ISO PMID:12968668 UniProt PMID:12968668 RGD:8554636 NCBI chr 2:58,446,438...58,566,828
Ensembl chr 2:58,388,644...58,567,157
JBrowse link
G Megf10 multiple EGF-like-domains 10 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr18:57,133,090...57,297,467
Ensembl chr18:57,133,090...57,297,467
JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box IMP (MGI:4879035|PMID:21177349) MGI PMID:21177349 MGI:4879035 NCBI chr19:55,741,797...55,933,659
Ensembl chr19:55,741,820...55,933,654
JBrowse link
G Wnt10b wingless-type MMTV integration site family, member 10B IMP (MGI:3581945|PMID:15673614) MGI PMID:15673614 MGI:3581945 NCBI chr15:98,770,712...98,778,206
Ensembl chr15:98,770,712...98,778,150
JBrowse link
regulation of striated muscle tissue development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Boc biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein ISO (MGI:2152959|PMID:11782431) MGI PMID:11782431 MGI:2152959 NCBI chr16:44,485,045...44,558,870
Ensembl chr16:44,485,049...44,558,897
JBrowse link
G Cdon cell adhesion molecule-related/down-regulated by oncogenes ISO (MGI:2152959|PMID:11782431) MGI PMID:11782431 MGI:2152959 NCBI chr 9:35,421,528...35,507,652
Ensembl chr 9:35,421,128...35,507,652
JBrowse link
G Cenpf centromere protein F IDA (MGI:1339480|PMID:10373470) MGI PMID:10373470 MGI:1339480 NCBI chr 1:189,640,606...189,688,107
Ensembl chr 1:189,640,606...189,688,086
JBrowse link
G Lox lysyl oxidase IMP (MGI:5634219|PMID:25715398) MGI PMID:25715398 MGI:5634219 NCBI chr18:52,516,060...52,529,867
Ensembl chr18:52,516,067...52,529,867
JBrowse link
G Smad3 SMAD family member 3 IDA (MGI:2153314|PMID:11711431) MGI PMID:11711431 MGI:2153314 NCBI chr 9:63,646,766...63,757,994
Ensembl chr 9:63,646,767...63,757,994
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IDA (MGI:2153314|PMID:11711431) MGI PMID:11711431 MGI:2153314 NCBI chr 7:25,687,002...25,705,077
Ensembl chr 7:25,687,002...25,705,077
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    regulation of biological process 12484
      regulation of developmental process 2679
        regulation of muscle organ development 58
          negative regulation of muscle organ development + 20
          positive regulation of muscle organ development + 28
          regulation of somitomeric trunk muscle development + 0
          regulation of striated muscle tissue development + 54
          regulation of ureter smooth muscle cell differentiation + 1
Path 2
Term Annotations click to browse term
  biological_process 23386
    developmental process 7030
      anatomical structure development 6504
        multicellular organism development 5968
          system development 5380
            animal organ development 4134
              muscle organ development 380
                regulation of muscle organ development 58
                  negative regulation of muscle organ development + 20
                  positive regulation of muscle organ development + 28
                  regulation of somitomeric trunk muscle development + 0
                  regulation of striated muscle tissue development + 54
                  regulation of ureter smooth muscle cell differentiation + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.