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ONTOLOGY REPORT - ANNOTATIONS


Term:muscle organ morphogenesis
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Accession:GO:0048644 term browser browse the term
Definition:The process in which the anatomical structures of muscle are generated and organized.


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muscle organ morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid5b AT-rich interaction domain 5B ISO MGI:3526852 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr20:21,713,900...21,881,193
Ensembl chr20:21,564,975...21,880,715
JBrowse link
G Cntf ciliary neurotrophic factor IEA
ISO
GO_REF:0000107
MGI:96787 (MGI:3575352|PMID:15716414)
Ensembl
RGD
PMID:15716414 GO_REF:0000107, MGI:3575352 NCBI chr 1:229,599,009...229,601,032
Ensembl chr 1:229,599,009...229,601,032
JBrowse link
G Gsc goosecoid homeobox ISO MGI:1857496 (MGI:76955|PMID:7555718) RGD PMID:7555718 MGI:76955 NCBI chr 6:128,147,181...128,149,220
Ensembl chr 6:128,147,181...128,149,220
JBrowse link
G Lif LIF, interleukin 6 family cytokine IEA
ISO
GO_REF:0000107
MGI:2181618 (MGI:3575352|PMID:15716414)
Ensembl
RGD
PMID:15716414 GO_REF:0000107, MGI:3575352 NCBI chr14:84,482,652...84,500,574
Ensembl chr14:84,482,674...84,500,642
JBrowse link
G Myf5 myogenic factor 5 ISO MGI:98493 (MGI:3849775|PMID:19531352) RGD PMID:19531352 MGI:3849775 NCBI chr 7:49,729,533...49,732,974
Ensembl chr 7:49,729,533...49,732,764
JBrowse link
G Serp1 stress-associated endoplasmic reticulum protein 1 ISO MGI:3652355 (MGI:3619104|PMID:16415102) RGD PMID:16415102 MGI:3619104 NCBI chr 2:148,718,279...148,722,263
Ensembl chr 2:148,718,280...148,722,263
JBrowse link
G Smtnl1 smoothelin-like 1 ISO MGI:3796616 (MGI:3796498|PMID:18310078) RGD PMID:18310078 MGI:3796498 NCBI chr 3:72,207,150...72,219,209
Ensembl chr 3:72,207,113...72,219,246
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:97252 (MGI:3849775|PMID:19531352)
UniProt
RGD
PMID:19531352 GO_REF:0000024, MGI:3849775 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tcf15 transcription factor 15 ISO MGI:1929775 (MGI:84545|PMID:8955271) RGD PMID:8955271 MGI:84545 NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
JBrowse link
aorta smooth muscle tissue morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col3a1 collagen type III alpha 1 chain ISO (MGI:5307011|PMID:21071432) RGD PMID:21071432 MGI:5307011 NCBI chr 9:52,023,295...52,059,221
Ensembl chr 9:52,023,295...52,059,217
JBrowse link
G Mir143 microRNA 143 ISO MGI:2676830 (MGI:4443305|PMID:19816508) RGD PMID:19816508 MGI:4443305 NCBI chr18:56,971,273...56,971,377
Ensembl chr18:56,971,273...56,971,377
JBrowse link
G Mir145 microRNA 145 ISO MGI:2676828 (MGI:4443305|PMID:19816508) RGD PMID:19816508 MGI:4443305 NCBI chr18:56,969,907...56,969,994
Ensembl chr18:56,969,907...56,969,994
JBrowse link
G Mylk myosin light chain kinase ISO (PMID:21055718) RGD PMID:21055718 NCBI chr11:69,013,060...69,260,039
Ensembl chr11:69,013,050...69,223,158
JBrowse link
G Prox1 prospero homeobox 1 ISO (MGI:3830437|PMID:19091769) RGD PMID:19091769 MGI:3830437 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
atrial cardiac muscle tissue morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp10 bone morphogenetic protein 10 ISO
IEA
(PMID:10072785)
GO_REF:0000107
RGD
Ensembl
PMID:10072785 GO_REF:0000107 NCBI chr 4:119,224,906...119,230,534
Ensembl chr 4:119,225,040...119,230,728
JBrowse link
G Eng endoglin ISO (MGI:3721185|PMID:17628518) RGD PMID:17628518 MGI:3721185 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
JBrowse link
G Myh6 myosin heavy chain 6 ISO
IEA
(PMID:15735645)
GO_REF:0000107
RGD
Ensembl
PMID:15735645 GO_REF:0000107 NCBI chr15:33,605,653...33,629,730
Ensembl chr15:33,605,654...33,629,699
JBrowse link
G Nog noggin IEA
ISO
GO_REF:0000107
(MGI:3783944|PMID:17218603)
Ensembl
RGD
PMID:17218603 GO_REF:0000107, MGI:3783944 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:2136268 (MGI:2135655|PMID:11493526) RGD PMID:11493526 MGI:2135655 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Prox1 prospero homeobox 1 ISO (MGI:3830437|PMID:19091769) RGD PMID:19091769 MGI:3830437 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Tnnt2 troponin T2, cardiac type ISO MGI:3692448|MGI:3692450|MGI:3692451 (MGI:1342889|PMID:10449439) RGD PMID:10449439 MGI:1342889 NCBI chr13:52,662,974...52,680,992
Ensembl chr13:52,662,996...52,680,990
JBrowse link
G Wnt2 Wnt family member 2 ISO MGI:4361155 (MGI:4439199|PMID:20159597) RGD PMID:20159597 MGI:4439199 NCBI chr 4:45,286,845...45,332,899
Ensembl chr 4:45,292,437...45,332,420
JBrowse link
cardiac muscle tissue growth involved in heart morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G S1pr1 sphingosine-1-phosphate receptor 1 ISS
ISO
GO_REF:0000024
(MGI:5049789|PMID:21668976)
UniProt
RGD
PMID:21668976 GO_REF:0000024, MGI:5049789 NCBI chr 2:218,654,406...218,658,761
Ensembl chr 2:218,654,554...218,658,761
JBrowse link
cardiac muscle tissue morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actc1 actin, alpha, cardiac muscle 1 ISO MGI:2180072 (MGI:3606389|PMID:14605248) RGD PMID:14605248 MGI:3606389 NCBI chr 3:105,507,403...105,512,939
Ensembl chr 3:105,507,403...105,512,939
JBrowse link
G Ankrd1 ankyrin repeat domain 1 ISO (PMID:19525294), (PMID:19608030) RGD PMID:19525294, PMID:19608030 NCBI chr 1:254,726,985...254,745,673
Ensembl chr 1:254,726,969...254,735,548
JBrowse link
G Bmp2 bone morphogenetic protein 2 IEA
ISO
GO_REF:0000107
MGI:3583785 (MGI:3611958|PMID:16314491)
Ensembl
RGD
PMID:16314491 GO_REF:0000107, MGI:3611958 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Egln1 egl-9 family hypoxia-inducible factor 1 ISO MGI:3690045 (MGI:3689683|PMID:16966370) RGD PMID:16966370 MGI:3689683 NCBI chr19:57,660,194...57,701,158
Ensembl chr19:57,662,278...57,699,113
JBrowse link
G Mylk2 myosin light chain kinase 2 ISO
IBA
IEA
(PMID:16448786)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:16448786, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 3:148,386,185...148,397,851
Ensembl chr 3:148,386,189...148,399,501
JBrowse link
G Nkx2-5 NK2 homeobox 5 ISO (PMID:11889119) RGD PMID:11889119 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:4947514|PMID:20007915) RGD PMID:20007915 MGI:4947514 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Tbx20 T-box transcription factor 20 ISO (MGI:3604925|PMID:15843409) RGD PMID:15843409 MGI:3604925 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
G Tcap titin-cap ISO
IBA
(PMID:9817758)
PMID:21873635
RGD PMID:9817758, PMID:21873635 RGD:13792537 NCBI chr10:86,337,705...86,338,414
Ensembl chr10:86,337,728...86,338,411
JBrowse link
G Ttn titin ISO (PMID:9817758)
MGI:3763610 (MGI:3760201|PMID:17360664)
RGD PMID:9817758, PMID:17360664 MGI:3760201 NCBI chr 3:63,565,160...63,837,815 JBrowse link
G Xirp2 xin actin-binding repeat containing 2 ISO MGI:4453315 (MGI:4438861|PMID:20360251) RGD PMID:20360251 MGI:4438861 NCBI chr 3:53,563,207...53,658,113
Ensembl chr 3:53,563,194...53,658,132
JBrowse link
G Zfpm1 zinc finger protein, multitype 1 ISO (MGI:3583527|PMID:14614148) RGD PMID:14614148 MGI:3583527 NCBI chr19:55,094,585...55,150,994
Ensembl chr19:55,094,585...55,150,686
JBrowse link
left ventricular cardiac muscle tissue morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ryr2 ryanodine receptor 2 IEA
ISO
GO_REF:0000107
MGI:3713774 (MGI:3713015|PMID:17431507)
Ensembl
RGD
PMID:17431507 GO_REF:0000107, MGI:3713015 NCBI chr17:65,533,998...65,955,606
Ensembl chr17:65,535,403...65,955,606
JBrowse link
G Smad4 SMAD family member 4 IEA
ISO
GO_REF:0000107
(MGI:3689643|PMID:16151019)
Ensembl
RGD
PMID:16151019 GO_REF:0000107, MGI:3689643 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
muscle tissue morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase, RNA-specific, B1 IEA
ISO
GO_REF:0000107
MGI:4840554 (MGI:4831065|PMID:20826656)
Ensembl
RGD
PMID:20826656 GO_REF:0000107, MGI:4831065 NCBI chr20:11,972,352...12,101,022
Ensembl chr20:11,972,381...12,101,047
JBrowse link
G Myf5 myogenic factor 5 ISO MGI:1857973|MGI:3055340|MGI:97491 (MGI:3849775|PMID:19531352) RGD PMID:19531352 MGI:3849775 NCBI chr 7:49,729,533...49,732,974
Ensembl chr 7:49,729,533...49,732,764
JBrowse link
G Myf6 myogenic factor 6 ISO MGI:1913092 (MGI:3849775|PMID:19531352) RGD PMID:19531352 MGI:3849775 NCBI chr 7:49,739,643...49,741,490
Ensembl chr 7:49,739,646...49,741,540
JBrowse link
G Pax7 paired box 7 ISO MGI:97252 (MGI:3849775|PMID:19531352) RGD PMID:19531352 MGI:3849775 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Shox2 short stature homeobox 2 ISO (MGI:4946446|PMID:21156168) RGD PMID:21156168 MGI:4946446 NCBI chr 2:164,118,175...164,126,783
Ensembl chr 2:164,118,191...164,126,783
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:2179190 (MGI:3849775|PMID:19531352)
UniProt
RGD
PMID:19531352 GO_REF:0000024, MGI:3849775 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
muscular septum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 NOT ISO (MGI:3814273|PMID:18924235) RGD PMID:18924235 MGI:3814273 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Fzd1 frizzled class receptor 1 IEA
ISO
GO_REF:0000107
MGI:1888513|MGI:2135272 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107, MGI:4837757 NCBI chr 4:26,470,864...26,475,262
Ensembl chr 4:26,470,864...26,475,262
JBrowse link
G Fzd2 frizzled class receptor 2 IEA
ISO
GO_REF:0000107
MGI:1196625|MGI:2135272 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107, MGI:4837757 NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO (MGI:2386835|PMID:12372254) RGD PMID:12372254 MGI:2386835 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 ISO (MGI:2663364|PMID:12773577) RGD PMID:12773577 MGI:2663364 NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:1196625|MGI:1888513 (MGI:4837757|PMID:20940229) RGD PMID:20940229 MGI:4837757 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
negative regulation of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 ISO MGI:98958 (MGI:4830282|PMID:19056682) RGD PMID:19056682 MGI:4830282 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
planar cell polarity pathway involved in cardiac muscle tissue morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt5a Wnt family member 5A IEA
ISO
GO_REF:0000107
MGI:1857617 (MGI:4830282|PMID:19056682)
Ensembl
RGD
PMID:19056682 GO_REF:0000107, MGI:4830282 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
post-embryonic cardiac muscle cell growth involved in heart morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt6 sirtuin 6 IMP RGD PMID:22335191 RGD:9586060 NCBI chr 7:10,937,622...10,943,048
Ensembl chr 7:10,937,599...10,943,063
JBrowse link
right ventricular cardiac muscle tissue morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-5 NK2 homeobox 5 ISO
IEA
(PMID:20807224)
GO_REF:0000107
RGD
Ensembl
PMID:20807224 GO_REF:0000107 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Zfpm2 zinc finger protein, multitype 2 ISO (PMID:20807224) RGD PMID:20807224 NCBI chr 7:79,471,277...79,964,405
Ensembl chr 7:79,638,046...79,964,405
JBrowse link
right ventricular compact myocardium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 ISO MGI:2450311|MGI:4433295 (MGI:5694290|PMID:26102480) RGD PMID:26102480 MGI:5694290 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
ventricular cardiac muscle tissue morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034767.1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr11:88,912,599...88,972,176 JBrowse link
G Bmp10 bone morphogenetic protein 10 IEA
ISO
GO_REF:0000107
(MGI:3040529|PMID:15073151), (MGI:3701380|PMID:17336907)
Ensembl
RGD
PMID:15073151, PMID:17336907 GO_REF:0000107, MGI:3040529, MGI:3701380 NCBI chr 4:119,224,906...119,230,534
Ensembl chr 4:119,225,040...119,230,728
JBrowse link
G Col11a1 collagen type XI alpha 1 chain ISO MGI:1856399 (MGI:3694610|PMID:17029294) RGD PMID:17029294 MGI:3694610 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153818 (MGI:3653131|PMID:16687131) RGD PMID:16687131 MGI:3653131 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Fkbp1a FKBP prolyl isomerase 1A ISO (MGI:1195585|PMID:9461216) RGD PMID:9461216 MGI:1195585 NCBI chr 3:147,042,944...147,062,725
Ensembl chr 3:147,042,944...147,062,724
JBrowse link
G Foxc1 forkhead box C1 ISO MGI:1347481 (MGI:3701735|PMID:16839542) RGD PMID:16839542 MGI:3701735 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Foxc2 forkhead box C2 ISO MGI:1347466 (MGI:3701735|PMID:16839542) RGD PMID:16839542 MGI:3701735 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO (PMID:18276607)
MGI:2153823 (MGI:1197800|PMID:9500551)
RGD PMID:9500551, PMID:18276607 MGI:1197800 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO UniProtKB:Q02248 (MGI:3829137|PMID:17519333) RGD PMID:17519333 MGI:3829137 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Ly6e lymphocyte antigen 6 family member E ISO MGI:2429638 (MGI:2157257|PMID:11784869) RGD PMID:11784869 MGI:2157257 NCBI chr 7:116,355,426...116,359,862
Ensembl chr 7:116,355,698...116,359,862
JBrowse link
G Mybpc3 myosin binding protein C3 ISO (PMID:11815426), (PMID:16754800) RGD PMID:11815426, PMID:16754800 NCBI chr 3:79,940,509...79,958,731
Ensembl chr 3:79,940,561...79,958,730
JBrowse link
G Myh6 myosin heavy chain 6 IEA
ISO
GO_REF:0000107
(PMID:11815426), (PMID:15998695)
Ensembl
RGD
PMID:11815426, PMID:15998695 GO_REF:0000107 NCBI chr15:33,605,653...33,629,730
Ensembl chr15:33,605,654...33,629,699
JBrowse link
G Myh7 myosin heavy chain 7 IEA
ISO
GO_REF:0000107
(PMID:15856146), (PMID:16754800)
Ensembl
RGD
PMID:15856146, PMID:16754800 GO_REF:0000107 NCBI chr15:33,605,769...33,657,761
Ensembl chr15:33,634,422...33,656,089
JBrowse link
G Myl2 myosin light chain 2 ISO
IEA
(PMID:8673105)
GO_REF:0000107
RGD
Ensembl
PMID:8673105 GO_REF:0000107 NCBI chr12:39,951,863...39,959,065
Ensembl chr12:39,951,987...39,958,239
JBrowse link
G Myl3 myosin light chain 3 ISO (PMID:16754800), (PMID:8673105) RGD PMID:8673105, PMID:16754800 NCBI chr 8:119,030,852...119,036,996
Ensembl chr 8:119,030,875...119,036,996
JBrowse link
G Pkp2 plakophilin 2 ISO (PMID:22889254) RGD PMID:22889254 NCBI chr11:88,912,163...88,972,213 JBrowse link
G Prox1 prospero homeobox 1 ISO (MGI:3830437|PMID:19091769) RGD PMID:19091769 MGI:3830437 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Ptcd2 pentatricopeptide repeat domain 2 ISO MGI:3830811 (MGI:3829520|PMID:18729827) RGD PMID:18729827 MGI:3829520 NCBI chr 2:29,570,581...29,598,328
Ensembl chr 2:29,570,538...29,598,277
JBrowse link
G Rxra retinoid X receptor alpha IEA
ISO
GO_REF:0000107
MGI:2136274 (MGI:1101382|PMID:9428411)
Ensembl
RGD
PMID:9428411 GO_REF:0000107, MGI:1101382 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Smad7 SMAD family member 7 IEA
ISO
GO_REF:0000107
(MGI:3836072|PMID:18952608)
Ensembl
RGD
PMID:18952608 GO_REF:0000107, MGI:3836072 NCBI chr18:71,395,830...71,424,164
Ensembl chr18:71,395,830...71,424,157
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO (MGI:67103|PMID:8009224) RGD PMID:8009224 MGI:67103 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 ISO (MGI:2663364|PMID:12773577) RGD PMID:12773577 MGI:2663364 NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
JBrowse link
G Tnnc1 troponin C1, slow skeletal and cardiac type ISO (PMID:15542288) RGD PMID:15542288 NCBI chr16:7,292,207...7,295,238
Ensembl chr16:7,292,096...7,295,465
JBrowse link
G Tnni1 troponin I1, slow skeletal type IEA
ISO
GO_REF:0000107
MGI:2387868 (MGI:1333026|PMID:9915769)
Ensembl
RGD
PMID:9915769 GO_REF:0000107, MGI:1333026 NCBI chr13:52,624,856...52,637,297
Ensembl chr13:52,624,878...52,637,297
JBrowse link
G Tnni3 troponin I3, cardiac type ISO (PMID:11815426), (PMID:16754800) RGD PMID:11815426, PMID:16754800 NCBI chr 1:72,882,806...72,886,490
Ensembl chr 1:72,882,806...72,886,488
JBrowse link
G Tnnt2 troponin T2, cardiac type ISO
ISS
(PMID:16754800)
MGI:3693250 (MGI:3611718|PMID:16326803)
GO_REF:0000024
RGD
UniProt
PMID:16326803, PMID:16754800 GO_REF:0000024, MGI:3611718 NCBI chr13:52,662,974...52,680,992
Ensembl chr13:52,662,996...52,680,990
JBrowse link
G Tpm1 tropomyosin 1 ISO
IEA
(PMID:11136687)
(MGI:3802907|PMID:17556658)
GO_REF:0000107
RGD
Ensembl
PMID:11136687, PMID:17556658 GO_REF:0000107, MGI:3802907 NCBI chr 8:72,814,737...72,841,496
Ensembl chr 8:72,814,740...72,842,228
JBrowse link
ventricular compact myocardium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO (MGI:3040576|PMID:15073157) RGD PMID:15073157 MGI:3040576 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Dsp desmoplakin ISO (MGI:3723417|PMID:16917092) RGD PMID:16917092 MGI:3723417 NCBI chr17:27,286,811...27,334,453
Ensembl chr17:27,286,796...27,334,379
JBrowse link
G Lrp2 LDL receptor related protein 2 IEA
ISO
ISS
GO_REF:0000107
(MGI:5770180|PMID:26822476)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:26822476 GO_REF:0000024, GO_REF:0000107, MGI:5770180 NCBI chr 3:55,665,153...55,822,484
Ensembl chr 3:55,665,145...55,822,551
JBrowse link
G Nog noggin IEA
ISO
GO_REF:0000107
(MGI:3783944|PMID:17218603)
Ensembl
RGD
PMID:17218603 GO_REF:0000107, MGI:3783944 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Pou4f1 POU class 4 homeobox 1 IEA
ISO
GO_REF:0000107
(MGI:3807433|PMID:18368538)
Ensembl
RGD
PMID:18368538 GO_REF:0000107, MGI:3807433 NCBI chr15:88,618,255...88,622,712
Ensembl chr15:88,620,470...88,622,413
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO (MGI:3820811|PMID:18718461) RGD PMID:18718461 MGI:3820811 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 ISO (MGI:2663364|PMID:12773577), (MGI:3818140|PMID:17704211) RGD PMID:12773577, PMID:17704211 MGI:2663364, MGI:3818140 NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
JBrowse link
ventricular trabecula myocardium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO (MGI:3040576|PMID:15073157) RGD PMID:15073157 MGI:3040576 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Ccm2l CCM2 like scaffold protein ISO MGI:1924696 (MGI:5437815|PMID:22898778) RGD PMID:22898778 MGI:5437815 NCBI chr 3:148,541,404...148,557,464
Ensembl chr 3:148,541,909...148,556,744
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 ISO MGI:2176467|MGI:4433295 (MGI:5694290|PMID:26102480) RGD PMID:26102480 MGI:5694290 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO (MGI:3056036|PMID:15466159) RGD PMID:15466159 MGI:3056036 NCBI chr 3:111,135,011...111,146,746
Ensembl chr 3:111,135,021...111,145,986
JBrowse link
G Eng endoglin ISO (MGI:4368063|PMID:19703439) RGD PMID:19703439 MGI:4368063 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
JBrowse link
G Foxh1 forkhead box H1 ISO (MGI:3055632|PMID:15363409) RGD PMID:15363409 MGI:3055632 NCBI chr 7:117,730,307...117,733,076
Ensembl chr 7:117,730,307...117,732,387
JBrowse link
G Heg1 heart development protein with EGF-like domains 1 ISO MGI:2385159 (MGI:5437815|PMID:22898778) RGD PMID:22898778 MGI:5437815 NCBI chr11:70,234,248...70,322,966
Ensembl chr11:70,236,888...70,322,690
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO MGI:1341884 (MGI:3530185|PMID:15680351) RGD PMID:15680351 MGI:3530185 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO MGI:1341800 (MGI:3530185|PMID:15680351) RGD PMID:15680351 MGI:3530185 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Med1 mediator complex subunit 1 ISO (MGI:2158098|PMID:11724781) RGD PMID:11724781 MGI:2158098 NCBI chr10:86,101,560...86,145,271
Ensembl chr10:86,103,600...86,144,880
JBrowse link
G Nkx2-5 NK2 homeobox 5 IEA
ISO
GO_REF:0000107
MGI:3042511 (MGI:3040116|PMID:15109497)
Ensembl
RGD
PMID:15109497 GO_REF:0000107, MGI:3040116 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:3701380|PMID:17336907) RGD PMID:17336907 MGI:3701380 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Nrg1 neuregulin 1 ISO
IEA
(PMID:17336907)
GO_REF:0000107
RGD
Ensembl
PMID:17336907 GO_REF:0000107 NCBI chr16:62,969,573...64,065,063
Ensembl chr16:63,837,216...64,057,434
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region ISO (MGI:3701380|PMID:17336907) RGD PMID:17336907 MGI:3701380 NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (MGI:894212|PMID:9217007) RGD PMID:9217007 MGI:894212 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO (MGI:3820811|PMID:18718461) RGD PMID:18718461 MGI:3820811 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Ube4b ubiquitination factor E4B ISO MGI:3611069 (MGI:3610695|PMID:16314518) RGD PMID:16314518 MGI:3610695 NCBI chr 5:166,156,033...166,259,069
Ensembl chr 5:166,156,033...166,259,069
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure morphogenesis 2879
        animal organ morphogenesis 1151
          muscle organ morphogenesis 88
            diaphragm morphogenesis 0
            muscle tissue morphogenesis + 81
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          system development 5279
            animal organ development 4033
              animal organ morphogenesis 1151
                muscle organ morphogenesis 88
                  diaphragm morphogenesis 0
                  muscle tissue morphogenesis + 81
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.