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ONTOLOGY REPORT - ANNOTATIONS


Term:epidermis morphogenesis
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Accession:GO:0048730 term browser browse the term
Definition:The process in which the anatomical structures of the epidermis are generated and organized. The epidermis is the outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species.
Synonyms:related_synonym: hypodermis morphogenesis


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epidermis morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III ISO MGI:3641051 (MGI:3639807|PMID:16682203) RGD PMID:16682203 MGI:3639807 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:1927833 (MGI:2676027|PMID:14530295) RGD PMID:14530295 MGI:2676027 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153818 (MGI:2676027|PMID:14530295) RGD PMID:14530295 MGI:2676027 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Flg2 filaggrin family member 2 ISO (PMID:29505760), (PMID:29758285) RGD PMID:29505760, PMID:29758285 NCBI chr 2:193,480,880...193,485,463
Ensembl chr 2:193,483,793...193,485,313
JBrowse link
G Klf4 Kruppel like factor 4 ISO MGI:2183936 (MGI:1341450|PMID:10431239) RGD PMID:10431239 MGI:1341450 NCBI chr 5:72,283,311...72,287,669
Ensembl chr 5:72,283,313...72,287,669
JBrowse link
G Klk14 kallikrein related-peptidase 14 ISO
IBA
(PMID:17158887)
PMID:21873635
RGD PMID:17158887, PMID:21873635 RGD:13792537 NCBI chr 1:99,616,153...99,621,425
Ensembl chr 1:99,616,447...99,621,037
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 ISO MGI:3620603 (MGI:3618677|PMID:16467571) RGD PMID:16467571 MGI:3618677 NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO MGI:2177413|MGI:3605892 (MGI:3604915|PMID:16192310) RGD PMID:16192310 MGI:3604915 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:3038304 (MGI:3616382|PMID:16449191) RGD PMID:16449191 MGI:3616382 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Wnt10a Wnt family member 10A ISO (PMID:20163410) RGD PMID:20163410 NCBI chr 9:82,053,581...82,066,047
Ensembl chr 9:82,053,581...82,066,047
JBrowse link
hair follicle morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha ISO MGI:1856099|MGI:1856466 (MGI:71790|PMID:2473662) RGD PMID:2473662 MGI:61157, MGI:71790 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Bcl2 BCL2, apoptosis regulator IEA
ISO
GO_REF:0000107
(MGI:63353|PMID:8402909)
Ensembl
RGD
PMID:8402909 GO_REF:0000107, MGI:63353 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
MGI:2148567|MGI:2148594|MGI:2148596|MGI:5461544 (MGI:1934694|PMID:11371349), (MGI:5545676|PMID:24309208)
Ensembl
RGD
PMID:11371349, PMID:24309208 GO_REF:0000107, MGI:1934694, MGI:5545676 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Ctsl cathepsin L ISO MGI:2136432 (MGI:2136433|PMID:11023992) RGD PMID:11023992 MGI:2136433 NCBI chr17:1,873,105...1,879,266
Ensembl chr17:1,872,848...1,879,279
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO MGI:3641051 (MGI:3639807|PMID:16682203) RGD PMID:16682203 MGI:3639807 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:1859647 (MGI:3688470|PMID:11062007) RGD PMID:11062007 MGI:3688470 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgf7 fibroblast growth factor 7 IEA
ISO
GO_REF:0000107
(MGI:1933622|PMID:11098134)
Ensembl
RGD
PMID:11098134 GO_REF:0000107, MGI:1933622 NCBI chr 3:118,315,859...118,368,464
Ensembl chr 3:118,317,761...118,366,872
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153818 (MGI:2676027|PMID:14530295) RGD PMID:14530295 MGI:2676027 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Foxe1 forkhead box E1 ISO MGI:2181780 (MGI:3056991|PMID:15367491) RGD PMID:15367491 MGI:3056991 NCBI chr 5:61,954,549...61,957,357
Ensembl chr 5:61,954,549...61,957,357
JBrowse link
G Foxq1 forkhead box Q1 ISO MGI:2176727 (MGI:2176575|PMID:11309849) RGD PMID:11309849 MGI:2176575 NCBI chr17:34,224,308...34,226,941
Ensembl chr17:34,224,818...34,226,453
JBrowse link
G Fst follistatin ISO MGI:1857467 (MGI:3699694|PMID:12514121) RGD PMID:12514121 MGI:3699694 NCBI chr 2:46,537,589...46,544,813
Ensembl chr 2:46,538,700...46,544,457
JBrowse link
G Gli2 GLI family zinc finger 2 ISO (PMID:15994174) RGD PMID:15994174 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gorab golgin, RAB6-interacting ISO (MGI:5766823|PMID:26967474) RGD PMID:26967474 MGI:5766823 NCBI chr13:81,682,207...81,698,827
Ensembl chr13:81,682,018...81,698,833
JBrowse link
G Igfbp5 insulin-like growth factor binding protein 5 ISO (MGI:3589307|PMID:16024235) RGD PMID:16024235 MGI:3589307 NCBI chr 9:80,154,230...80,166,813
Ensembl chr 9:80,150,211...80,167,033
JBrowse link
G Intu inturned planar cell polarity protein IEA
ISO
GO_REF:0000107
MGI:4441401 (MGI:5545722|PMID:22935613)
Ensembl
RGD
PMID:22935613 GO_REF:0000107, MGI:5545722 NCBI chr 2:127,589,325...127,611,705
Ensembl chr 2:127,459,012...127,525,437
JBrowse link
G Krt17 keratin 17 ISS
ISO
GO_REF:0000024
(MGI:2450823|PMID:12050118)
UniProt
RGD
PMID:12050118 GO_REF:0000024, MGI:2450823 NCBI chr10:88,158,993...88,163,712
Ensembl chr10:88,118,001...88,163,723
JBrowse link
G Krt25 keratin 25 ISO MGI:3707007 (MGI:3770737|PMID:17920809) RGD PMID:17920809 MGI:3770737 NCBI chr10:87,225,361...87,238,659
Ensembl chr10:87,225,343...87,232,723
JBrowse link
G Krt27 keratin 27 ISO MGI:1856138 (MGI:3770737|PMID:17920809) RGD PMID:17920809 MGI:3770737 NCBI chr10:87,256,434...87,261,717
Ensembl chr10:87,256,434...87,261,717
JBrowse link
G Krt71 keratin 71 ISO (PMID:22592156)
(MGI:2679780|PMID:14573483)
RGD PMID:14573483, PMID:22592156 MGI:2679780 NCBI chr 7:143,345,201...143,371,346
Ensembl chr 7:143,345,201...143,353,925
JBrowse link
G Ngfr nerve growth factor receptor ISO MGI:1857226 (MGI:1350519|PMID:10588868) RGD PMID:10588868 MGI:1350519 NCBI chr10:83,389,828...83,408,061
Ensembl chr10:83,389,847...83,408,061
JBrowse link
G Notch1 notch receptor 1 ISO MGI:1933835|MGI:2159109|MGI:2177413|MGI:3044585 (MGI:3513219|PMID:15525534), (MGI:3588883|PMID:15978571) RGD PMID:15525534, PMID:15978571 MGI:3513219, MGI:3588883 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Pla2g10 phospholipase A2, group X IEA
ISO
GO_REF:0000107
(MGI:4947921|PMID:21266583)
Ensembl
RGD
PMID:21266583 GO_REF:0000107, MGI:4947921 NCBI chr10:1,509,732...1,520,970
Ensembl chr10:1,509,732...1,520,970
JBrowse link
G Runx1 RUNX family transcription factor 1 ISO MGI:3043614 (MGI:3692798|PMID:17011173) RGD PMID:17011173 MGI:3692798 NCBI chr11:32,765,147...33,003,061
Ensembl chr11:32,769,165...33,003,021
JBrowse link
G Runx3 RUNX family transcription factor 3 ISO MGI:2183399 (MGI:3583033|PMID:15937937) RGD PMID:15937937 MGI:3583033 NCBI chr 5:153,507,093...153,531,137
Ensembl chr 5:153,507,093...153,531,137
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:1857796|MGI:1934261 (MGI:1289785|PMID:9768360), (MGI:2149936|PMID:11520664), (MGI:2681050|PMID:14623238)
Ensembl
RGD
PMID:9768360, PMID:11520664, PMID:14623238 GO_REF:0000107, MGI:1289785, MGI:2149936, MGI:2681050 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smo smoothened, frizzled class receptor IEA
ISO
GO_REF:0000107
MGI:1934268|MGI:2445832 (MGI:3696007|PMID:17199044)
Ensembl
RGD
PMID:17199044 GO_REF:0000107, MGI:3696007 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Snai1 snail family transcriptional repressor 1 ISO (MGI:3576202|PMID:15630473) RGD PMID:15630473 MGI:3576202 NCBI chr 3:164,274,710...164,279,199
Ensembl chr 3:164,274,710...164,279,378
JBrowse link
G Sostdc1 sclerostin domain containing 1 ISO MGI:3604658 (MGI:5319554|PMID:22509524) RGD PMID:22509524 MGI:5319554 NCBI chr 6:55,812,820...55,816,994
Ensembl chr 6:55,812,747...55,817,066
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISS
ISO
GO_REF:0000024
(MGI:1342915|PMID:10433821)
UniProt
RGD
PMID:10433821 GO_REF:0000024, MGI:1342915 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tmem79 transmembrane protein 79 ISO MGI:1856947 (MGI:5519142|PMID:24084074) RGD PMID:24084074 MGI:5519142 NCBI chr 2:187,701,522...187,706,452
Ensembl chr 2:187,697,509...187,706,321
JBrowse link
G Tp63 tumor protein p63 ISO MGI:1934580 (MGI:3621088|PMID:16524929) RGD PMID:16524929 MGI:3621088 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
G Wnt10a Wnt family member 10A ISO (PMID:20163410) RGD PMID:20163410 NCBI chr 9:82,053,581...82,066,047
Ensembl chr 9:82,053,581...82,066,047
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure morphogenesis 2879
        tissue morphogenesis 698
          morphogenesis of an epithelium 586
            epidermis morphogenesis 38
              epidermis morphogenesis involved in nipple formation 0
              hair follicle morphogenesis 32
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        tissue development 2099
          tissue morphogenesis 698
            morphogenesis of an epithelium 586
              epidermis morphogenesis 38
                epidermis morphogenesis involved in nipple formation 0
                hair follicle morphogenesis 32
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.