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ONTOLOGY REPORT - ANNOTATIONS


Term:muscle fiber development
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Accession:GO:0048747 term browser browse the term
Definition:The process whose specific outcome is the progression of the muscle fiber over time, from its formation to the mature structure. In skeletal muscle, fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.
Synonyms:exact_synonym: muscle fibre development;   myofiber development;   myofibre development


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muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afg3l2 AFG3 like matrix AAA peptidase subunit 2 JBrowse link NW_004955402 1,037,414 1,069,165 RGD:9068941
G Cacna2d2 calcium voltage-gated channel auxiliary subunit alpha2delta 2 JBrowse link NW_004955532 2,163,529 2,283,509 RGD:9068941
G Chrnb1 cholinergic receptor nicotinic beta 1 subunit JBrowse link NW_004955467 9,471,962 9,482,370 RGD:9068941
G Dmd dystrophin JBrowse link NW_004955535 1,283,084 3,297,015 RGD:9068941
G Dysf dysferlin JBrowse link NW_004955424 13,756,130 13,970,437 RGD:9068941
G Flnc filamin C JBrowse link NW_004955479 9,633,817 9,661,725 RGD:9068941
G Lox lysyl oxidase JBrowse link NW_004955521 178,290 193,926 RGD:9068941
G Myl2 myosin light chain 2 JBrowse link NW_004955482 7,708,436 7,713,877 RGD:9068941
G Myof myoferlin JBrowse link NW_004955425 24,037 175,211 RGD:9068941
G Neb nebulin JBrowse link NW_004955440 17,060,303 17,259,558 RGD:9068941
G Nebl nebulette JBrowse link NW_004955429 7,559,994 7,730,683 RGD:9068941
G Nrap nebulin related anchoring protein JBrowse link NW_004955431 18,604,508 18,669,853 RGD:9068941
G Ptcd2 pentatricopeptide repeat domain 2 JBrowse link NW_004955575 1,126,978 1,156,727 RGD:9068941
G Sgcb sarcoglycan beta JBrowse link NW_004955447 18,459,562 18,472,367 RGD:9068941
G Uchl1 ubiquitin C-terminal hydrolase L1 JBrowse link NW_004955443 6,367,519 6,379,638 RGD:9068941
G Wfikkn1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 JBrowse link NW_004955442 16,573,094 16,577,650 RGD:9068941
G Wfikkn2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 JBrowse link NW_004955451 10,976,748 10,982,482 RGD:9068941
cardiac muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cxadr CXADR Ig-like cell adhesion molecule JBrowse link NW_004955407 18,894,853 18,927,129 RGD:9068941
G Myh11 myosin heavy chain 11 JBrowse link NW_004955442 528,317 644,252 RGD:9068941
G Myo18b myosin XVIIIB JBrowse link NW_004955455 437,308 696,161 RGD:9068941
G Myom1 myomesin 1 JBrowse link NW_004955402 7,293,415 7,418,226 RGD:9068941
G Myom2 myomesin 2 JBrowse link NW_004955403 57,718,120 57,783,338 RGD:9068941
G Myom3 myomesin 3 JBrowse link NW_004955452 3,925,373 3,968,721 RGD:9068941
G Sgcd sarcoglycan delta JBrowse link NW_004955408 10,273,344 10,820,108 RGD:9068941
G Tcap titin-cap JBrowse link NW_004955451 14,413,657 14,414,735 RGD:9068941
G Ttn titin JBrowse link NW_004955403 18,057,344 18,328,389 RGD:9068941
G Vegfa vascular endothelial growth factor A JBrowse link NW_004955437 9,527,445 9,541,908 RGD:9068941
G Zmpste24 zinc metallopeptidase STE24 JBrowse link NW_004955537 82,724 134,609 RGD:9068941
positive regulation of cardiac muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actn3 actinin alpha 3 JBrowse link NW_004955422 18,799,372 18,812,458 RGD:9068941
G Bcl2 BCL2 apoptosis regulator JBrowse link NW_004955402 46,911,125 47,084,214 RGD:9068941
G Lmod3 leiomodin 3 JBrowse link NW_004955421 18,728,993 18,744,326 RGD:9068941
G Myf5 myogenic factor 5 JBrowse link NW_004955405 19,345,943 19,348,453 RGD:9068941
G Myf6 myogenic factor 6 JBrowse link NW_004955405 19,336,798 19,338,610 RGD:9068941
G Myod1 myogenic differentiation 1 JBrowse link NW_004955414 32,523,959 32,526,575 RGD:9068941
G Myog myogenin JBrowse link NW_004955406 39,099,044 39,102,479 RGD:9068941
G Niban2 niban apoptosis regulator 2 JBrowse link NW_004955419 1,089,602 1,119,620 RGD:9068941
G Shox2 short stature homeobox 2 JBrowse link NW_004955448 8,937,656 8,947,890 RGD:9068941
regulation of skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxo22 F-box protein 22 JBrowse link NW_004955450 1,152,383 1,171,257 RGD:9068941
G Hdac4 histone deacetylase 4 JBrowse link NW_004955542 1,629,691 1,886,160 RGD:9068941
G Hdac9 histone deacetylase 9 JBrowse link NW_004955410 21,046,312 21,932,029 RGD:9068941
G Naca nascent polypeptide associated complex subunit alpha JBrowse link NW_004955458 4,251,679 4,265,430 RGD:9068941
skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acta1 actin alpha 1, skeletal muscle JBrowse link NW_004955492 8,644,696 8,647,412 RGD:9068941
G Bin3 bridging integrator 3 JBrowse link NW_004955403 46,042,885 46,085,029 RGD:9068941
G Cav2 caveolin 2 JBrowse link NW_004955432 22,240,041 22,242,200 RGD:9068941
G Dner delta/notch like EGF repeat containing JBrowse link NW_004955453 5,307,256 5,615,550 RGD:9068941
G Gpx1 glutathione peroxidase 1 JBrowse link NW_004955532 1,298,336 1,298,830 RGD:9068941
G Homer1 homer scaffold protein 1 JBrowse link NW_004955425 21,644,577 21,774,843 RGD:9068941
G Kel Kell metallo-endopeptidase (Kell blood group) JBrowse link NW_004955494 668,188 688,036 RGD:9068941
G Klhl40 kelch like family member 40 JBrowse link NW_004955420 28,117,553 28,122,391 RGD:9068941
G Klhl41 kelch like family member 41 JBrowse link NW_004955449 5,023,362 5,041,006 RGD:9068941
G Lmod3 leiomodin 3 JBrowse link NW_004955421 18,728,993 18,744,326 RGD:9068941
G Myod1 myogenic differentiation 1 JBrowse link NW_004955414 32,523,959 32,526,575 RGD:9068941
G Myog myogenin JBrowse link NW_004955406 39,099,044 39,102,479 RGD:9068941
G Myorg myogenesis regulating glycosidase (putative) JBrowse link NW_004955472 1,735,292 1,740,304 RGD:9068941
G P2rx2 purinergic receptor P2X 2 JBrowse link NW_004955482 418,101 422,058 RGD:9068941
G Ppp3ca protein phosphatase 3 catalytic subunit alpha JBrowse link NW_004955496 6,934,542 7,059,745 RGD:9068941
G Rcan1 regulator of calcineurin 1 JBrowse link NW_004955407 33,873,427 33,951,762 RGD:9068941
G Ripor2 RHO family interacting cell polarization regulator 2 JBrowse link NW_004955483 2,048,236 2,257,078 RGD:9068941
G Ryr1 ryanodine receptor 1 JBrowse link NW_004955468 879,807 1,000,118 RGD:9068941
G Selenon selenoprotein N JBrowse link NW_004955452 5,295,716 5,311,113 RGD:9068941
G Six1 SIX homeobox 1 JBrowse link NW_004955466 8,961,597 8,966,069 RGD:9068941
G Ski SKI proto-oncogene JBrowse link NW_004955486 8,857,693 8,921,821 RGD:9068941
G Smo smoothened, frizzled class receptor JBrowse link NW_004955479 9,963,377 9,991,670 RGD:9068941
G Stac3 SH3 and cysteine rich domain 3 JBrowse link NW_004955458 4,971,450 4,980,262 RGD:9068941
G Wnt10b Wnt family member 10B JBrowse link NW_004955500 7,782,782 7,800,281 RGD:9068941
G Xk X-linked Kx blood group JBrowse link NW_004955587 668,871 725,829 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14546
    cellular process 13383
      cellular developmental process 4025
        cell development 2097
          muscle cell development 170
            striated muscle cell development 157
              muscle fiber development 64
                cardiac muscle fiber development + 12
                skeletal muscle fiber development + 35
Path 2
Term Annotations click to browse term
  biological_process 14546
    cellular process 13383
      cellular developmental process 4025
        cell differentiation 3848
          muscle cell differentiation 350
            striated muscle cell differentiation 273
              striated muscle cell development 157
                muscle fiber development 64
                  cardiac muscle fiber development + 12
                  skeletal muscle fiber development + 35
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.