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ONTOLOGY REPORT - ANNOTATIONS


Term:muscle fiber development
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Accession:GO:0048747 term browser browse the term
Definition:The process whose specific outcome is the progression of the muscle fiber over time, from its formation to the mature structure. In skeletal muscle, fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.
Synonyms:exact_synonym: muscle fibre development;   myofiber development;   myofibre development


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muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AFG3L2 AFG3 like matrix AAA peptidase subunit 2 JBrowse link 18 12,328,944 12,377,309 RGD:2290271
G CACNA2D2 calcium voltage-gated channel auxiliary subunit alpha2delta 2 JBrowse link 3 50,362,613 50,504,244 RGD:2290271
G CHRNB1 cholinergic receptor nicotinic beta 1 subunit JBrowse link 17 7,445,061 7,457,710 RGD:2290271
G COMP cartilage oligomeric matrix protein JBrowse link 19 18,782,773 18,791,305 RGD:2290271
G DMD dystrophin JBrowse link X 31,119,219 33,339,460 RGD:2290271
G DYSF dysferlin JBrowse link 2 71,453,154 71,686,763 RGD:2290271
G FLNC filamin C JBrowse link 7 128,830,406 128,859,274 RGD:2290271
G LOX lysyl oxidase JBrowse link 5 122,063,195 122,078,259 RGD:2290271
G MYL2 myosin light chain 2 JBrowse link 12 110,910,845 110,920,579 RGD:2290271
G MYOF myoferlin JBrowse link 10 93,306,429 93,482,505 RGD:2290271
G NEB nebulin JBrowse link 2 151,485,334 151,734,487 RGD:2290271
G NEBL nebulette JBrowse link 10
10
20,779,973
21,125,738
21,174,187
21,146,609
RGD:2290271
G NRAP nebulin related anchoring protein JBrowse link 10 113,588,714 113,664,070 RGD:2290271
G PTCD2 pentatricopeptide repeat domain 2 JBrowse link 5 72,320,367 72,368,395 RGD:2290271
G SGCB sarcoglycan beta JBrowse link 4 52,020,706 52,038,299 RGD:2290271
G UCHL1 ubiquitin C-terminal hydrolase L1 JBrowse link 4 41,256,928 41,268,455 RGD:2290271
G WFIKKN1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 JBrowse link 16 630,985 634,117 RGD:2290271
G WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 JBrowse link 17 50,834,584 50,842,353 RGD:2290271
cardiac muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CXADR CXADR Ig-like cell adhesion molecule JBrowse link 21 17,512,906 17,636,213 RGD:2290271
G MYH11 myosin heavy chain 11 JBrowse link 16 15,703,135 15,857,032 RGD:2290271
G MYH6 myosin heavy chain 6 JBrowse link 14 23,381,990 23,408,277 RGD:2290271
G MYO18B myosin XVIIIB JBrowse link 22 25,742,133 26,063,847 RGD:2290271
G MYOM1 myomesin 1 JBrowse link 18 3,066,807 3,220,108 RGD:2290271
G MYOM2 myomesin 2 JBrowse link 8 2,045,046 2,145,456 RGD:2290271
G MYOM3 myomesin 3 JBrowse link 1 24,056,041 24,112,135 RGD:2290271
G SGCD sarcoglycan delta JBrowse link 5 155,728,636 156,767,788 RGD:2290271
G TCAP titin-cap JBrowse link 17 39,665,349 39,666,554 RGD:2290271
G TTN titin JBrowse link 2 178,525,989 178,807,423 RGD:2290271
G VEGFA vascular endothelial growth factor A JBrowse link 6 43,770,209 43,786,487 RGD:2290271
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 1 40,258,078 40,294,180 RGD:2290271
positive regulation of cardiac muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 14 53,949,736 53,956,891 RGD:2290271
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTN3 actinin alpha 3 (gene/pseudogene) JBrowse link 11 66,546,395 66,563,334 RGD:2290271
G BCL2 BCL2 apoptosis regulator JBrowse link 18 63,123,346 63,320,280 RGD:2290271
G LMOD3 leiomodin 3 JBrowse link 3 69,106,065 69,122,595 RGD:2290271
G MYF5 myogenic factor 5 JBrowse link 12 80,716,912 80,719,671 RGD:2290271
G MYF6 myogenic factor 6 JBrowse link 12 80,707,634 80,709,474 RGD:2290271
G MYOD1 myogenic differentiation 1 JBrowse link 11 17,719,571 17,722,136 RGD:2290271
G MYOG myogenin JBrowse link 1 203,083,129 203,086,012 RGD:2290271
G NIBAN2 niban apoptosis regulator 2 JBrowse link 9 127,505,339 127,579,031 RGD:2290271
G SHOX2 short stature homeobox 2 JBrowse link 3 158,095,905 158,106,420 RGD:2290271
regulation of skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FBXO22 F-box protein 22 JBrowse link 15 75,903,859 75,942,511 RGD:2290271
G HDAC4 histone deacetylase 4 JBrowse link 2 239,048,168 239,401,647 RGD:2290271
G HDAC9 histone deacetylase 9 JBrowse link 7 18,086,825 19,002,416 RGD:2290271
G NACA nascent polypeptide associated complex subunit alpha JBrowse link 12 56,712,427 56,725,299 RGD:2290271
skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTA1 actin alpha 1, skeletal muscle JBrowse link 1 229,431,245 229,434,094 RGD:2290271
G AL512428.1 novel protein RGD:2290271
G BIN3 bridging integrator 3 JBrowse link 8 22,620,418 22,669,148 RGD:2290271
G CAV2 caveolin 2 JBrowse link 7 116,499,738 116,508,541 RGD:2290271
G DNER delta/notch like EGF repeat containing JBrowse link 2 229,357,629 229,714,555 RGD:2290271
G GPX1 glutathione peroxidase 1 JBrowse link 3 49,357,171 49,358,600 RGD:2290271
G HOMER1 homer scaffold protein 1 JBrowse link 5 79,372,636 79,514,134 RGD:2290271
G KEL Kell metallo-endopeptidase (Kell blood group) JBrowse link 7 142,941,114 142,962,363 RGD:2290271
G KLHL40 kelch like family member 40 JBrowse link 3 42,685,537 42,692,544 RGD:2290271
G KLHL41 kelch like family member 41 JBrowse link 2 169,509,702 169,526,258 RGD:2290271
G LMOD3 leiomodin 3 JBrowse link 3 69,106,065 69,122,595 RGD:2290271
G MYOD1 myogenic differentiation 1 JBrowse link 11 17,719,571 17,722,136 RGD:2290271
G MYOG myogenin JBrowse link 1 203,083,129 203,086,012 RGD:2290271
G MYORG myogenesis regulating glycosidase (putative) JBrowse link 9 34,366,149 34,376,952 RGD:2290271
G P2RX2 purinergic receptor P2X 2 JBrowse link 12 132,618,776 132,623,736 RGD:2290271
G PPP3CA protein phosphatase 3 catalytic subunit alpha JBrowse link 4 101,023,418 101,348,295 RGD:2290271
G RCAN1 regulator of calcineurin 1 JBrowse link 21 34,516,442 34,615,123 RGD:2290271
G RIPOR2 RHO family interacting cell polarization regulator 2 JBrowse link 6 24,804,284 25,042,288 RGD:2290271
G RYR1 ryanodine receptor 1 JBrowse link 19 38,433,691 38,587,564 RGD:2290271
G SELENON selenoprotein N JBrowse link 1 25,800,193 25,818,221 RGD:2290271
G SIX1 SIX homeobox 1 JBrowse link 14 60,643,421 60,649,489 RGD:2290271
G SKI SKI proto-oncogene JBrowse link 1 2,228,319 2,310,213 RGD:2290271
G SMO smoothened, frizzled class receptor JBrowse link 7 129,188,633 129,213,548 RGD:2290271
G STAC3 SH3 and cysteine rich domain 3 JBrowse link 12 57,243,453 57,251,188 RGD:2290271
G WNT10B Wnt family member 10B JBrowse link 12 48,965,340 48,979,587 RGD:2290271
G XK X-linked Kx blood group JBrowse link X 37,685,686 37,732,130 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17988
    cellular process 16264
      cellular developmental process 4491
        cell development 2196
          muscle cell development 174
            striated muscle cell development 161
              muscle fiber development 67
                cardiac muscle fiber development + 13
                skeletal muscle fiber development + 36
Path 2
Term Annotations click to browse term
  biological_process 17988
    cellular process 16264
      cellular developmental process 4491
        cell differentiation 4300
          muscle cell differentiation 361
            striated muscle cell differentiation 282
              striated muscle cell development 161
                muscle fiber development 67
                  cardiac muscle fiber development + 13
                  skeletal muscle fiber development + 36
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.