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ONTOLOGY REPORT - ANNOTATIONS


Term:muscle fiber development
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Accession:GO:0048747 term browser browse the term
Definition:The process whose specific outcome is the progression of the muscle fiber over time, from its formation to the mature structure. In skeletal muscle, fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.
Synonyms:exact_synonym: muscle fibre development;   myofiber development;   myofibre development


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muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CACNA2D2 calcium voltage-gated channel auxiliary subunit alpha2delta 2 JBrowse link 13 32,845,110 32,988,851 RGD:14298760
G CACNB4 calcium voltage-gated channel auxiliary subunit beta 4 JBrowse link 15 402,801 455,691 RGD:14298760
G CHRNB1 cholinergic receptor nicotinic beta 1 subunit JBrowse link 12 52,749,422 52,774,642 RGD:14298760
G COMP cartilage oligomeric matrix protein JBrowse link 2 59,061,409 59,068,951 RGD:14298760
G FGF11 fibroblast growth factor 11 JBrowse link 12 52,742,090 52,749,331 RGD:14298760
G FLNC filamin C JBrowse link 18 19,759,734 19,787,616 RGD:14298760
G LOX lysyl oxidase JBrowse link 2 125,595,115 125,607,026 RGD:14298760
G MYL2 myosin light chain 2 JBrowse link 14 32,205,953 32,213,848 RGD:14298760
G MYOF myoferlin JBrowse link 14 104,770,514 104,941,212 RGD:14298760
G NEB nebulin JBrowse link 15 546,187 766,131 RGD:14298760
G NEBL nebulette JBrowse link 10 53,602,929 53,957,869 RGD:14298760
G PTCD2 pentatricopeptide repeat domain 2 JBrowse link 16 48,605,014 48,635,954 RGD:14298760
G UCHL1 ubiquitin C-terminal hydrolase L1 JBrowse link 8 32,353,766 32,367,288 RGD:14298760
G WFIKKN1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 JBrowse link 3 41,136,200 41,139,986 RGD:14298760
G WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 JBrowse link 12 27,093,241 27,100,423 RGD:14298760
cardiac muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALPK3 alpha kinase 3 JBrowse link 7 52,667,342 52,718,775 RGD:14298760
G CXADR CXADR Ig-like cell adhesion molecule JBrowse link 13 182,134,416 182,185,977 RGD:14298760
G MYO18B myosin XVIIIB JBrowse link 14 43,467,823 43,687,729 RGD:14298760
G MYOM1 myomesin 1 JBrowse link 6 103,451,206 103,593,093 RGD:14298760
G MYOM2 myomesin 2 JBrowse link 15 33,529,559 33,606,928 RGD:14298760
G MYOM3 myomesin 3 JBrowse link 6 81,803,877 81,859,506 RGD:14298760
G SGCD sarcoglycan delta JBrowse link 16 66,447,982 67,481,709 RGD:14298760
G TCAP titin-cap JBrowse link 12 22,651,666 22,652,904 RGD:14298760
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 6 96,008,307 96,057,131 RGD:14298760
positive regulation of cardiac muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 1 183,415,989 183,422,888 RGD:14298760
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MYF5 myogenic factor 5 JBrowse link 5 100,753,440 100,755,558 RGD:14298760
G MYF6 myogenic factor 6 JBrowse link 5 100,762,918 100,764,771 RGD:14298760
G MYOD1 myogenic differentiation 1 JBrowse link 2 41,422,522 41,424,236 RGD:14298760
G SHOX2 short stature homeobox 2 JBrowse link 13 97,879,586 97,892,276 RGD:14298760
regulation of skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FBXO22 F-box protein 22 JBrowse link 7 56,146,874 56,189,921 RGD:14298760
skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTA1 actin alpha 1, skeletal muscle JBrowse link 14 60,412,651 60,415,687 RGD:14298760
G BBS5 Bardet-Biedl syndrome 5 JBrowse link 15 75,850,860 75,874,950 RGD:14298760
G CAV2 caveolin 2 JBrowse link 18 29,699,012 29,707,277 RGD:14298760
G DNER delta/notch like EGF repeat containing JBrowse link 15 130,414,159 130,754,043 RGD:14298760
G GPX1 glutathione peroxidase 1 JBrowse link 13 31,916,269 31,917,337 RGD:14298760
G HOMER1 homer scaffold protein 1 JBrowse link 2 88,116,664 88,253,843 RGD:14298760
G KEL Kell metallo-endopeptidase (Kell blood group) JBrowse link 18 7,242,378 7,279,345 RGD:14298760
G KLHL40 kelch like family member 40 JBrowse link 13 26,202,607 26,211,528 RGD:14298760
G KLHL41 kelch like family member 41 JBrowse link 15 75,875,694 75,893,789 RGD:14298760
G MYOD1 myogenic differentiation 1 JBrowse link 2 41,422,522 41,424,236 RGD:14298760
G MYORG myogenesis regulating glycosidase (putative) JBrowse link 10 32,436,349 32,443,971 RGD:14298760
G P2RX2 purinergic receptor P2X 2 JBrowse link 14 22,854,828 22,858,574 RGD:14298760
G PPP3CA protein phosphatase 3 catalytic subunit alpha JBrowse link 8 119,429,181 119,754,615 RGD:14298760
G RCAN1 regulator of calcineurin 1 JBrowse link 13 198,106,256 198,205,727 RGD:14298760
G RIPOR2 RHO family interacting cell polarization regulator 2 JBrowse link 7 19,609,358 19,842,345 RGD:14298760
G RYR1 ryanodine receptor 1 JBrowse link 6 47,339,759 47,458,457 RGD:14298760
G SELENON selenoprotein N JBrowse link 6 83,246,934 83,262,748 RGD:14298760
G SIX1 SIX homeobox 1 JBrowse link 1 189,620,430 189,624,652 RGD:14298760
G SMO smoothened, frizzled class receptor JBrowse link 18 19,450,730 19,478,796 RGD:14298760
G STAC3 SH3 and cysteine rich domain 3 JBrowse link 5 22,549,008 22,556,330 RGD:14298760
G WNT10B Wnt family member 10B JBrowse link 5 14,997,377 15,013,928 RGD:14298760
G XK X-linked Kx blood group JBrowse link X 33,544,287 33,602,576 RGD:14298760

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14320
    cellular process 12707
      cellular developmental process 2846
        cell development 1526
          muscle cell development 119
            striated muscle cell development 110
              muscle fiber development 51
                cardiac muscle fiber development + 10
                skeletal muscle fiber development + 26
Path 2
Term Annotations click to browse term
  biological_process 14320
    cellular process 12707
      cellular developmental process 2846
        cell differentiation 2693
          muscle cell differentiation 238
            striated muscle cell differentiation 188
              striated muscle cell development 110
                muscle fiber development 51
                  cardiac muscle fiber development + 10
                  skeletal muscle fiber development + 26
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.