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ONTOLOGY REPORT - ANNOTATIONS


Term:otolith development
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Accession:GO:0048840 term browser browse the term
Definition:The process whose specific outcome is the progression of the otolith over time, from its formation to the mature structure.
Synonyms:only_in_taxon: NCBITaxon:7742 ! Vertebrata


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otolith development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG5 autophagy related 5 IEA Ensembl GO_REF:0000107 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,453
JBrowse link
G NOX3 NADPH oxidase 3 IEA Ensembl GO_REF:0000107 NCBI chr 1:11,443,681...11,501,140
Ensembl chr 1:11,446,060...11,500,978
JBrowse link
otolith formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC44A4 solute carrier family 44 member 4 ISS UniProt GO_REF:0000024 NCBI chr 7:23,958,935...23,977,466
Ensembl chr 7:23,958,936...23,977,482
JBrowse link
otolith mineralization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 ISO (MGI:MGI:1275896|PMID:9668038) MGI PMID:9668038 MGI:MGI:1275896 NCBI chr13:66,526,508...66,897,125
Ensembl chr13:66,528,322...66,897,128
JBrowse link
G OC90 otoconin 90 ISO (MGI:MGI:5896790|PMID:21655225), (MGI:MGI:6189500|PMID:24748133) UniProtKB PMID:21655225, PMID:24748133 MGI:MGI:5896790, MGI:MGI:6189500 NCBI chr 4:9,028,483...9,054,503 JBrowse link
G OTOL1 otolin 1 IEA Ensembl GO_REF:0000107 NCBI chr13:101,140,167...101,193,710
Ensembl chr13:101,170,670...101,194,419
JBrowse link
otolith morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 IEA Ensembl GO_REF:0000107 NCBI chr 7:5,324,467...5,363,346
Ensembl chr 7:5,321,648...5,364,268
JBrowse link
G LRIG1 leucine rich repeats and immunoglobulin like domains 1 IEA Ensembl GO_REF:0000107 NCBI chr13:47,909,002...48,027,396
Ensembl chr13:47,909,011...48,027,384
JBrowse link
G LRIG3 leucine rich repeats and immunoglobulin like domains 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:24,066,611...24,117,971
Ensembl chr 5:24,066,613...24,117,962
JBrowse link
G TTC39C tetratricopeptide repeat domain 39C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:108,859,792...108,968,236
Ensembl chr 6:108,860,322...108,968,678
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16545
    developmental process 6302
      anatomical structure development 5842
        otolith development 10
          otolith mineralization + 3
          otolith morphogenesis + 5
          otolith tethering 0
Path 2
Term Annotations click to browse term
  biological_process 16545
    developmental process 6302
      anatomical structure development 5842
        multicellular organism development 5340
          system development 4963
            animal organ development 3802
              sensory organ development 682
                ear development 261
                  inner ear development 235
                    otolith development 10
                      otolith mineralization + 3
                      otolith morphogenesis + 5
                      otolith tethering 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.