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ONTOLOGY REPORT - ANNOTATIONS


Term:otolith development
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Accession:GO:0048840 term browser browse the term
Definition:The process whose specific outcome is the progression of the otolith over time, from its formation to the mature structure.
Synonyms:only_in_taxon: NCBITaxon:7742 ! Vertebrata


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otolith development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 ISO
IEA
MGI:MGI:3612279 (MGI:MGI:4829568|PMID:20577052)
GO_REF:0000107
RGD
Ensembl
PMID:20577052 GO_REF:0000107, MGI:MGI:4829568 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140
JBrowse link
G Nox3 NADPH oxidase 3 ISO MGI:MGI:1856606 (MGI:MGI:1351720|PMID:10491954) RGD PMID:10491954 MGI:MGI:1351720 NCBI chr 1:44,550,994...44,615,760
Ensembl chr 1:44,550,994...44,615,760
JBrowse link
otolith formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc44a4 solute carrier family 44, member 4 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:4,593,389...4,609,641
Ensembl chr20:4,593,389...4,609,631
JBrowse link
otolith mineralization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO MGI:MGI:1857876 (MGI:MGI:1275896|PMID:9668038) RGD PMID:9668038 MGI:MGI:1275896 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Oc90 otoconin 90 ISO (MGI:MGI:5896790|PMID:21655225), (MGI:MGI:6189500|PMID:24748133) RGD PMID:21655225, PMID:24748133 MGI:MGI:5896790, MGI:MGI:6189500 NCBI chr 7:106,615,859...106,697,089
Ensembl chr 7:106,619,326...106,653,567
JBrowse link
G Otol1 otolin 1 ISO (MGI:MGI:5896790|PMID:21655225), (MGI:MGI:6189500|PMID:24748133), (MGI:MGI:6189669|PMID:29076638) RGD PMID:21655225, PMID:24748133, PMID:29076638 MGI:MGI:5896790, MGI:MGI:6189500, MGI:MGI:6189669 NCBI chr 2:166,845,543...166,866,513
Ensembl chr 2:166,856,784...166,866,195
JBrowse link
otolith morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO MGI:MGI:1856106 (MGI:MGI:53623|PMID:5367369) RGD PMID:5367369 MGI:MGI:53623 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
JBrowse link
G Lrig1 leucine-rich repeats and immunoglobulin-like domains 1 ISO MGI:MGI:2443955 (MGI:MGI:5519140|PMID:24086156) RGD PMID:24086156 MGI:MGI:5519140 NCBI chr 4:126,615,998...126,717,434
Ensembl chr 4:126,617,244...126,644,895
JBrowse link
G Lrig3 leucine-rich repeats and immunoglobulin-like domains 3 ISO MGI:MGI:107935 (MGI:MGI:5519140|PMID:24086156) RGD PMID:24086156 MGI:MGI:5519140 NCBI chr 7:69,213,098...69,263,251
Ensembl chr 7:69,213,147...69,263,142
JBrowse link
G Ttc39c tetratricopeptide repeat domain 39C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:3,958,424...4,080,028
Ensembl chr18:3,958,432...4,080,025
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        otolith development 10
          otolith mineralization + 3
          otolith morphogenesis + 5
          otolith tethering 0
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            animal organ development 4027
              sensory organ development 693
                ear development 268
                  inner ear development 241
                    otolith development 10
                      otolith mineralization + 3
                      otolith morphogenesis + 5
                      otolith tethering 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.