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ONTOLOGY REPORT - ANNOTATIONS


Term:diencephalon morphogenesis
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Accession:GO:0048852 term browser browse the term
Definition:The process in which the anatomical structures of the diencephalon are generated and organized. The diencephalon is the paired caudal parts of the prosencephalon from which the thalamus, hypothalamus, epithalamus and subthalamus are derived; these regions regulate autonomic, visceral and endocrine function, and process information directed to the cerebral cortex.


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diencephalon morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx1 orthodenticle homeobox 1 ISO
IEA
MGI:MGI:97451 (MGI:MGI:4848254|PMID:20816794)
GO_REF:0000107
RGD
Ensembl
PMID:20816794 GO_REF:0000107, MGI:MGI:4848254 NCBI chr14:106,861,556...106,864,933
Ensembl chr14:106,861,676...106,864,892
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:MGI:97450 (MGI:MGI:4848254|PMID:20816794) RGD PMID:20816794 MGI:MGI:4848254 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO MGI:MGI:2181440|MGI:MGI:3052123 (MGI:MGI:3051708|PMID:15240551) RGD PMID:15240551 MGI:MGI:3051708 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
adenohypophysis morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Duox2 dual oxidase 2 ISO
IEA
MGI:MGI:3712359 (MGI:MGI:3712355|PMID:17440044)
GO_REF:0000107
RGD
Ensembl
PMID:17440044 GO_REF:0000107, MGI:MGI:3712355 NCBI chr 3:114,218,187...114,237,808
Ensembl chr 3:114,218,193...114,235,933
JBrowse link
hypophysis morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prop1 PROP paired-like homeobox 1 ISO
IBA
MGI:MGI:3690463 (MGI:MGI:3690195|PMID:16678101)
PMID:21873635
RGD PMID:16678101, PMID:21873635 MGI:MGI:3690195, RGD:13792537 NCBI chr10:36,449,920...36,452,381
Ensembl chr10:36,449,920...36,452,378
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:1857617 (MGI:MGI:3043884|PMID:15037319)
GO_REF:0000107
RGD
Ensembl
PMID:15037319 GO_REF:0000107, MGI:MGI:3043884 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure morphogenesis 2872
        diencephalon morphogenesis 6
          hypophysis morphogenesis + 3
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            nervous system development 2716
              central nervous system development 1257
                brain development 963
                  forebrain development 507
                    forebrain morphogenesis 17
                      diencephalon morphogenesis 6
                        hypophysis morphogenesis + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.