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ONTOLOGY REPORT - ANNOTATIONS


Term:neural nucleus development
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Accession:GO:0048857 term browser browse the term
Definition:The biological process whose specific outcome is the progression of a neural nucleus from its initial condition to its mature state. A neural nucleus is an anatomical structure consisting of a discrete aggregate of neuronal soma.


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neural nucleus development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxb2 homeobox B2 JBrowse link 10 84,200,859 84,203,065 RGD:1624291
caudate nucleus development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxp2 forkhead box P2 JBrowse link 4 41,364,441 41,944,685 RGD:1624291
cochlear nucleus development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:1624291
RGD:1600115
G Scrib scribble planar cell polarity protein JBrowse link 7 117,105,810 117,128,802 RGD:1624291
G Sec24b SEC24 homolog B, COPII coat complex component JBrowse link 2 230,286,886 230,356,887 RGD:1624291
G Slc4a7 solute carrier family 4 member 7 JBrowse link 15 11,832,611 11,912,923 RGD:1624291
facial nucleus development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa1 homeobox A1 JBrowse link 4 82,124,358 82,127,182 RGD:1624291
G Hoxb1 homeo box B1 JBrowse link 10 84,214,358 84,215,812 RGD:1624291
globus pallidus development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arx aristaless related homeobox JBrowse link X 62,363,757 62,376,139 RGD:1624291
RGD:1600115
G Kcnc1 potassium voltage-gated channel subfamily C member 1 JBrowse link 1 102,414,352 102,456,718 RGD:9685780
G Kcnc2 potassium voltage-gated channel subfamily C member 2 JBrowse link 7 54,978,453 55,159,362 RGD:9685780
G Nkx2-1 NK2 homeobox 1 JBrowse link 6 77,418,096 77,423,383 RGD:1624291
RGD:1600115
lateral geniculate nucleus development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit JBrowse link 2 189,088,570 189,096,785 RGD:1624291
locus ceruleus development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Phox2a paired-like homeobox 2a JBrowse link 1 166,893,734 166,898,252 RGD:1624291
RGD:1600115
nucleus accumbens development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 JBrowse link 1 127,302,920 127,337,828 RGD:1624291
RGD:1600115
principal sensory nucleus of trigeminal nerve development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kirrel3 kirre like nephrin family adhesion molecule 3 JBrowse link 8 35,692,525 36,254,755 RGD:1624291
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:12790706
G Nfib nuclear factor I/B JBrowse link 5 100,436,343 100,647,962 RGD:1624291
RGD:1600115
putamen development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxp2 forkhead box P2 JBrowse link 4 41,364,441 41,944,685 RGD:1624291
retrotrapezoid nucleus neuron differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Phox2b paired-like homeobox 2b JBrowse link 14 42,711,169 42,718,707 RGD:1624291
substantia nigra development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actb actin, beta JBrowse link 12 13,715,843 13,718,813 RGD:9068941
G Atp5pb ATP synthase peripheral stalk-membrane subunit b JBrowse link 2 208,566,385 208,577,147 RGD:9068941
G Atp5pf ATP synthase peripheral stalk subunit F6 JBrowse link 11 24,286,806 24,294,419 RGD:9068941
G Basp1 brain abundant, membrane attached signal protein 1 JBrowse link 2 77,586,424 77,632,626 RGD:9068941
G Calm1 calmodulin 1 JBrowse link 6 124,217,241 124,225,292 RGD:9068941
G Calm2 calmodulin 2 JBrowse link 6 11,067,675 11,080,078 RGD:9068941
G Calm3 calmodulin 3 JBrowse link 1 78,844,520 78,851,628 RGD:9068941
G Ccdc14 coiled-coil domain containing 14 JBrowse link 11 69,281,000 69,316,897 RGD:9068941
G Cdc42 cell division cycle 42 JBrowse link 5 155,690,267 155,728,385 RGD:9068941
G Ckb creatine kinase B JBrowse link 6 136,142,956 136,145,838 RGD:9068941
G Cnp 2',3'-cyclic nucleotide 3' phosphodiesterase JBrowse link 10 88,490,798 88,497,357 RGD:9068941
G Cox6b1 cytochrome c oxidase subunit 6B1 JBrowse link 1 89,075,987 89,084,834 RGD:9068941
G Dynll1 dynein light chain LC8-type 1 JBrowse link 12 47,074,200 47,076,573 RGD:9068941
G Eno3 enolase 3 JBrowse link 10 57,278,271 57,283,661 RGD:9068941
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:1624291
G Fgf9 fibroblast growth factor 9 JBrowse link 15 38,341,657 38,386,945 RGD:9068941
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 14 82,272,322 82,287,739 RGD:1624291
G G6pd glucose-6-phosphate dehydrogenase JBrowse link X 156,274,800 156,293,935 RGD:9068941
G Glud1 glutamate dehydrogenase 1 JBrowse link 16 10,661,486 10,695,557 RGD:9068941
G Gnb4 G protein subunit beta 4 JBrowse link 2 118,978,965 119,007,877 RGD:9068941
G Hspa5 heat shock protein family A (Hsp70) member 5 JBrowse link 3 13,838,304 13,842,763 RGD:9068941
G Ina internexin neuronal intermediate filament protein, alpha JBrowse link 1 266,782,835 266,794,389 RGD:9068941
G Ldha lactate dehydrogenase A JBrowse link 1 102,900,288 102,909,713 RGD:9068941
G LOC100361457 actin, gamma 1 propeptide-like JBrowse link 3 75,643,053 75,644,978 RGD:9068941
G Mag myelin-associated glycoprotein JBrowse link 1 89,345,325 89,360,905 RGD:9068941
G Maob monoamine oxidase B JBrowse link X 6,430,694 6,533,520 RGD:9068941
G Mapkap1 MAPK associated protein 1 JBrowse link 3 13,484,952 13,701,772 RGD:9068941
G Mbp myelin basic protein JBrowse link 18 79,326,738 79,437,310 RGD:9068941
G Ndrg2 NDRG family member 2 JBrowse link 15 28,305,820 28,314,459 RGD:9068941
G Ndufs3 NADH:ubiquinone oxidoreductase core subunit S3 JBrowse link 3 79,721,686 79,728,863 RGD:9068941
G Padi2 peptidyl arginine deiminase 2 JBrowse link 5 159,428,479 159,471,113 RGD:9068941
G Plp1 proteolipid protein 1 JBrowse link X 107,494,326 107,511,355 RGD:9068941
G Rad1 RAD1 checkpoint DNA exonuclease JBrowse link 2 60,461,513 60,469,646 RGD:9068941
G Rhoa ras homolog family member A JBrowse link 8 117,082,440 117,116,244 RGD:9068941
G S100a1 S100 calcium binding protein A1 JBrowse link 2 189,900,505 189,905,348 RGD:9068941
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor JBrowse link 3 3,856,218 3,890,785 RGD:9068941
G Sirt2 sirtuin 2 JBrowse link 1 86,948,866 86,971,954 RGD:9068941
G Suds3 SDS3 homolog, SIN3A corepressor complex component JBrowse link 12 45,199,012 45,221,507 RGD:9068941
G Syngr3 synaptogyrin 3 JBrowse link 10 14,051,413 14,056,169 RGD:9068941
G Sypl2 synaptophysin-like 2 JBrowse link 2 211,003,046 211,017,778 RGD:9068941
G Ttbk1 tau tubulin kinase 1 JBrowse link 9 16,862,305 16,899,399 RGD:9068941
G Ywhae tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon JBrowse link 10 63,884,338 63,921,709 RGD:9068941
G Ywhah tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta JBrowse link 14 83,053,041 83,062,424 RGD:9068941
G Ywhaq tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta JBrowse link 6 43,463,294 43,493,816 RGD:9068941
G Zfp148 zinc finger protein 148 JBrowse link 11 70,509,909 70,618,422 RGD:9068941
subthalamic nucleus development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pitx2 paired-like homeodomain 2 JBrowse link 2 233,602,732 233,621,059 RGD:1624291
superior olivary nucleus maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 JBrowse link 10 67,862,054 67,863,255 RGD:1624291
G Cdk5r2 cyclin-dependent kinase 5 regulatory subunit 2 JBrowse link 9 82,120,059 82,121,527 RGD:1624291
vestibular nucleus development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:1624291
G Cacna1a calcium voltage-gated channel subunit alpha1 A JBrowse link 19 25,453,236 25,749,550 RGD:1624291
RGD:1600115

Term paths to the root
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Term Annotations click to browse term
  biological_process 19858
    developmental process 6734
      anatomical structure development 6180
        neural nucleus development 69
          abducens nucleus development 0
          caudate nucleus development 1
          cochlear nucleus development + 4
          dentate nucleus development 0
          dorsal motor nucleus of vagus nerve development + 0
          emboliform nucleus development 0
          facial nucleus development 2
          fastigial nucleus development 0
          globose nucleus development 0
          globus pallidus development 4
          hypoglossal nucleus development 0
          inferior olivary nucleus development + 0
          inferior raphe nucleus development 0
          inferior reticular formation development 0
          lateral geniculate nucleus development 1
          lateral reticular nucleus development 0
          locus ceruleus development + 1
          nucleus accumbens development 1
          nucleus ambiguus development 0
          putamen development 1
          retrotrapezoid nucleus development + 1
          salivary nucleus development + 0
          solitary nucleus development 0
          substantia nigra development 45
          subthalamic nucleus development 1
          superior olivary nucleus development + 2
          superior raphe nucleus development 0
          trigeminal motor nucleus development 0
          trigeminal sensory nucleus development + 3
          vestibular nucleus development 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.