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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of viral transcription
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Accession:GO:0050434 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of viral transcription.
Synonyms:exact_synonym: up regulation of viral transcription;   upregulation of viral transcription
 narrow_synonym: activation of viral transcription;   stimulation of viral transcription


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positive regulation of viral transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 ISO (PMID:11096080) RGD PMID:11096080 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 IDA from cytomegalovirus immediate-early promoter RGD PMID:11746500 RGD:2293493 NCBI chr 2:43,329,516...43,393,203
Ensembl chr 2:43,329,516...43,393,207
JBrowse link
G Mdfic MyoD family inhibitor domain containing ISO
IBA
(PMID:10671520)
PMID:21873635
RGD PMID:10671520, PMID:21873635 RGD:13792537 NCBI chr 4:42,202,546...42,282,499
Ensembl chr 4:42,202,838...42,282,496
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:MGI:5693363|PMID:21191019) RGD PMID:21191019 MGI:MGI:5693363 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Pfn1 profilin 1 IMP RGD PMID:12740026 RGD:2324854 NCBI chr10:57,273,003...57,275,708
Ensembl chr10:57,273,005...57,275,708
JBrowse link
G Rsf1 remodeling and spacing factor 1 ISO (PMID:11788598) RGD PMID:11788598 NCBI chr 1:162,549,222...162,671,962
Ensembl chr 1:162,549,420...162,662,170
JBrowse link
positive regulation by host of viral transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd1 chromodomain helicase DNA binding protein 1 ISO (PMID:25297984) RGD PMID:25297984 NCBI chr 1:57,692,828...57,756,762
Ensembl chr 1:57,692,836...57,755,485
JBrowse link
G Ctdp1 CTD phosphatase subunit 1 ISO (PMID:15723517) RGD PMID:15723517 NCBI chr18:76,922,913...76,985,095
Ensembl chr18:76,922,934...76,984,203
JBrowse link
G Ep300 E1A binding protein p300 ISO (PMID:16687403) RGD PMID:16687403 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 ISO (PMID:26748656) RGD PMID:26748656 NCBI chr16:20,645,956...20,652,890
Ensembl chr16:20,645,957...20,652,889
JBrowse link
G Gtf2b general transcription factor IIB IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:248,709,433...248,727,741
Ensembl chr 2:248,715,281...248,727,741
JBrowse link
G Hpn hepsin IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:15614436)
Ensembl
UniProt
RGD
PMID:15614436 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:89,534,112...89,549,575
Ensembl chr 1:89,534,106...89,543,967
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO (PMID:2833704) RGD PMID:2833704 NCBI chr 5:114,011,184...114,014,277
Ensembl chr 5:114,011,189...114,014,277
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IEA
ISO
GO_REF:0000107
(PMID:7657162)
Ensembl
RGD
PMID:7657162 GO_REF:0000107 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 ISO UniProtKB:P04608 (PMID:25116364) RGD PMID:25116364 NCBI chr13:48,679,726...48,709,663
Ensembl chr13:48,679,774...48,705,575
JBrowse link
G Rrp1b ribosomal RNA processing 1B ISO (PMID:26311876) RGD PMID:26311876 NCBI chr20:10,844,234...10,869,830
Ensembl chr20:10,844,266...10,869,821
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO
IEA
(PMID:16687403)
GO_REF:0000107
RGD
Ensembl
PMID:16687403 GO_REF:0000107 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 ISO (PMID:16687403) RGD PMID:16687403 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
G Snw1 SNW domain containing 1 ISO (PMID:15905409), (PMID:19818711) RGD PMID:15905409, PMID:19818711 NCBI chr 6:111,483,698...111,507,782
Ensembl chr 6:111,483,703...111,507,782
JBrowse link
G Sp1 Sp1 transcription factor ISO (PMID:2833704) RGD PMID:2833704 NCBI chr 7:144,014,173...144,044,635
Ensembl chr 7:144,014,173...144,044,629
JBrowse link
G Taf11 TATA-box binding protein associated factor 11 ISO (PMID:9108034) RGD PMID:9108034 NCBI chr20:7,476,648...7,484,417
Ensembl chr20:7,476,651...7,482,747
JBrowse link
G Tfap4 transcription factor AP-4 ISO (PMID:2833704) RGD PMID:2833704 NCBI chr10:11,204,616...11,222,975
Ensembl chr10:11,206,226...11,223,370
JBrowse link
G Zfp639 zinc finger protein 639 ISO
ISS
(PMID:20484494)
GO_REF:0000024
RGD
UniProt
PMID:20484494 GO_REF:0000024 NCBI chr 2:118,906,479...118,917,491
Ensembl chr 2:118,910,587...118,916,563
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    positive regulation of biological process 6652
      positive regulation of viral process 92
        positive regulation of viral transcription 23
          positive regulation by host of viral transcription 17
Path 2
Term Annotations click to browse term
  biological_process 20027
    interspecies interaction between organisms 1917
      symbiotic process 400
        viral process 334
          viral gene expression 70
            viral transcription 54
              regulation of viral transcription 51
                positive regulation of viral transcription 23
                  positive regulation by host of viral transcription 17
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.