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ONTOLOGY REPORT - ANNOTATIONS


Term:chondroitin sulfate proteoglycan biosynthetic process
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Accession:GO:0050650 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of chondroitin sulfate proteoglycan, any glycoprotein whose glycosaminoglycan units are chondroitin sulfate. Chondroitin sulfates are a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues; the repeat units consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate.
Synonyms:exact_synonym: chondroitin sulfate proteoglycan anabolism;   chondroitin sulfate proteoglycan biosynthesis;   chondroitin sulfate proteoglycan formation;   chondroitin sulfate proteoglycan synthesis;   chondroitin sulphate proteoglycan biosynthesis;   chondroitin sulphate proteoglycan biosynthetic process


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chondroitin sulfate proteoglycan biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G B3gat1 beta-1,3-glucuronyltransferase 1 JBrowse link 8 27,777,024 27,804,368 RGD:13792537
G B3gat2 beta-1,3-glucuronyltransferase 2 JBrowse link 9 29,984,077 30,068,649 RGD:13792537
G B3gat3 beta-1,3-glucuronyltransferase 3 JBrowse link 1 225,120,061 225,126,579 RGD:1624291
RGD:13792537
G Csgalnact2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 JBrowse link 4 150,148,626 150,185,062 RGD:1624291
G Cytl1 cytokine like 1 JBrowse link 14 77,805,137 77,810,147 RGD:1624291
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:1624291
G Pxylp1 2-phosphoxylose phosphatase 1 JBrowse link 8 104,724,728 104,790,639 RGD:1624291
RGD:1600115
G Xylt1 xylosyltransferase 1 JBrowse link 1 186,939,698 187,264,758 RGD:1600115
RGD:13792537
RGD:1624291
G Xylt2 xylosyltransferase 2 JBrowse link 10 82,386,003 82,399,485 RGD:1600115
RGD:13792537
RGD:1624291
chondroitin sulfate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chpf chondroitin polymerizing factor JBrowse link 9 82,669,199 82,673,898 RGD:1624291
G Chst11 carbohydrate sulfotransferase 11 JBrowse link 7 26,641,856 26,890,503 RGD:1624291
G Chst12 carbohydrate sulfotransferase 12 JBrowse link 12 16,199,975 16,218,404 RGD:1624291
G Chst13 carbohydrate sulfotransferase 13 JBrowse link 4 122,223,846 122,244,848 RGD:1624291
G Chst3 carbohydrate sulfotransferase 3 JBrowse link 20 29,731,828 29,768,656 RGD:1600115
RGD:13792537
RGD:1624291
G Chst7 carbohydrate sulfotransferase 7 JBrowse link X 2,623,018 2,657,155 RGD:1624291
RGD:13792537
G Chsy1 chondroitin sulfate synthase 1 JBrowse link 1 127,010,587 127,071,570 RGD:1624291
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 JBrowse link 16 22,704,318 23,075,071 RGD:1624291
G Slc35d1 solute carrier family 35 member D1 JBrowse link 5 122,700,396 122,746,815 RGD:1624291
G Ugdh UDP-glucose 6-dehydrogenase JBrowse link 14 44,479,614 44,502,845 RGD:1600115
RGD:1624291
G Xylt1 xylosyltransferase 1 JBrowse link 1 186,939,698 187,264,758 RGD:1600115
RGD:1624291
G Xylt2 xylosyltransferase 2 JBrowse link 10 82,386,003 82,399,485 RGD:1600115
chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 JBrowse link 16 22,704,318 23,075,071 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19334
    metabolic process 11555
      primary metabolic process 10411
        protein metabolic process 5973
          glycoprotein metabolic process 354
            proteoglycan metabolic process 73
              proteoglycan biosynthetic process 48
                chondroitin sulfate proteoglycan biosynthetic process 19
                  chondroitin sulfate biosynthetic process 12
                  chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process 1
Path 2
Term Annotations click to browse term
  biological_process 19334
    metabolic process 11555
      organic substance metabolic process 10949
        macromolecule metabolic process 9418
          cellular macromolecule metabolic process 8127
            cellular macromolecule biosynthetic process 4773
              glycoprotein biosynthetic process 289
                proteoglycan biosynthetic process 48
                  chondroitin sulfate proteoglycan biosynthetic process 19
                    chondroitin sulfate biosynthetic process 12
                    chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process 1
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.