Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of mRNA processing
go back to main search page
Accession:GO:0050685 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of mRNA processing.
Synonyms:exact_synonym: up regulation of mRNA processing;   upregulation of mRNA processing
 narrow_synonym: activation of mRNA processing;   stimulation of mRNA processing


show annotations for term's descendants           Sort by:
 
positive regulation of mRNA processing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase, RNA-specific, B1 IDA RGD PMID:10331393 RGD:10450893 NCBI chr20:11,972,352...12,101,022
Ensembl chr20:11,972,381...12,101,047
JBrowse link
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 IMP c-mos polyadenylation RGD PMID:15291744 RGD:1578405 NCBI chr 2:30,782,133...30,791,106
Ensembl chr 2:30,783,915...30,791,221
JBrowse link
G Cdc73 cell division cycle 73 ISO
IEA
ISS
(PMID:19136632)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:19136632 GO_REF:0000024, GO_REF:0000107 NCBI chr13:60,403,771...60,496,511
Ensembl chr13:60,403,771...60,496,511
JBrowse link
G Dhx36 DEAH-box helicase 36 ISS
ISO
GO_REF:0000024
(PMID:27940037)
UniProt
RGD
PMID:27940037 GO_REF:0000024 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component ISO
ISS
(PMID:21329879)
GO_REF:0000024
RGD
UniProt
PMID:21329879 GO_REF:0000024 NCBI chr 8:82,380,906...82,405,293
Ensembl chr 8:82,380,757...82,405,644
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 ISO
ISS
(PMID:9342333)
GO_REF:0000024
RGD
UniProt
PMID:9342333 GO_REF:0000024 NCBI chr 5:61,734,118...61,767,098
Ensembl chr 5:61,734,118...61,766,481
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 ISO (PMID:9342333) RGD PMID:9342333 NCBI chr11:72,071,838...72,103,087
Ensembl chr11:72,921,282...72,929,003
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO
ISS
(PMID:21329879)
GO_REF:0000024
RGD
UniProt
PMID:21329879 GO_REF:0000024 NCBI chr 1:85,362,421...85,367,999
Ensembl chr 1:85,362,268...85,368,031
JBrowse link
positive regulation of mRNA polyadenylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 ISO (PMID:28383716) RGD PMID:28383716 NCBI chr 1:143,171,457...143,278,485
Ensembl chr 1:143,171,264...143,278,485
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 ISO (MGI:MGI:5300629|PMID:22153079) RGD PMID:22153079 MGI:MGI:5300629 NCBI chr 1:255,660,165...255,842,671
Ensembl chr 1:255,665,238...255,815,733
JBrowse link
G Hsf1 heat shock transcription factor 1 ISO (PMID:14707147) RGD PMID:14707147 NCBI chr 7:117,538,523...117,565,478
Ensembl chr 7:117,538,523...117,565,478
JBrowse link
G Nudt21 nudix hydrolase 21 ISS
ISO
GO_REF:0000024
(PMID:15937220)
UniProt
RGD
PMID:15937220 GO_REF:0000024 NCBI chr19:11,451,366...11,470,637
Ensembl chr19:11,450,760...11,467,644
JBrowse link
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07061152.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:106,982,503...106,983,279 JBrowse link
G Celf3 CUGBP, Elav-like family member 3 ISO (PMID:15009664) RGD PMID:15009664 NCBI chr 2:195,716,373...195,732,872
Ensembl chr 2:195,719,543...195,730,274
JBrowse link
G Celf4 CUGBP, Elav-like family member 4 ISO (PMID:15009664) RGD PMID:15009664 NCBI chr18:17,689,090...18,079,835
Ensembl chr18:17,698,038...17,716,880
JBrowse link
G Cirbp cold inducible RNA binding protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:12,400,066...12,405,054
Ensembl chr 7:12,401,207...12,405,022
JBrowse link
G Dazap1 DAZ associated protein 1 ISO
IBA
(MGI:MGI:5532638|PMID:23636947)
PMID:21873635
RGD PMID:23636947, PMID:21873635 MGI:MGI:5532638, RGD:13792537 NCBI chr 7:12,289,895...12,315,897
Ensembl chr 7:12,290,402...12,311,149
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 ISO (MGI:MGI:3814796|PMID:18480465) RGD PMID:18480465 MGI:MGI:3814796 NCBI chr10:108,415,201...108,425,195
Ensembl chr10:108,415,202...108,425,206
JBrowse link
G Hmx2 H6 family homeobox 2 ISO (MGI:MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:MGI:5532638 NCBI chr 1:203,515,605...203,523,266
Ensembl chr 1:203,515,609...203,523,358
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO (MGI:MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:MGI:5532638 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Lmntd2 lamin tail domain containing 2 ISO (MGI:MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:MGI:5532638 NCBI chr 1:214,197,126...214,202,828
Ensembl chr 1:214,196,430...214,202,853
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 ISO (PMID:23793891) RGD PMID:23793891 NCBI chr 5:61,734,118...61,767,098
Ensembl chr 5:61,734,118...61,766,481
JBrowse link
G Ncl nucleolin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:93,369,119...93,377,643
Ensembl chr 9:93,368,932...93,377,643
JBrowse link
G Nup98 nucleoporin 98 and 96 precursor ISO
ISS
(PMID:28221134)
GO_REF:0000024
RGD
UniProt
PMID:28221134 GO_REF:0000024 NCBI chr 1:167,213,866...167,308,851
Ensembl chr 1:167,213,866...167,308,851
JBrowse link
G Obi1 ORC ubiquitin ligase 1 ISO (MGI:MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:MGI:5532638 NCBI chr15:88,632,089...88,670,325
Ensembl chr15:88,631,794...88,670,349
JBrowse link
G Prdx6 peroxiredoxin 6 ISO UniProtKB:Q8IWL8 (PMID:16186110) RGD PMID:16186110 NCBI chr13:79,077,567...79,088,113
Ensembl chr13:79,077,033...79,088,127
JBrowse link
G Prpf19 pre-mRNA processing factor 19 ISO (MGI:MGI:3814796|PMID:18480465) RGD PMID:18480465 MGI:MGI:3814796 NCBI chr 1:226,947,065...226,958,147
Ensembl chr 1:226,947,105...226,958,144
JBrowse link
G Rbm3 RNA binding motif protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:15,098,880...15,102,344
Ensembl chr  X:15,098,904...15,102,340
JBrowse link
G Rbmx RNA binding motif protein, X-linked IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:159,881,835...159,891,405
Ensembl chr  X:159,884,885...159,891,326
JBrowse link
G Rbmxl1 RBMX like 1 IDA
IBA
PMID:19282290
PMID:21873635
UniProt
GO_Central
PMID:19282290, PMID:21873635 RGD:2316827, RGD:13792537 NCBI chr19:33,081,473...33,084,988
Ensembl chr19:33,083,412...33,084,915
JBrowse link
G Rbmxl1b RNA binding motif protein, X-linked-like 1B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:42,186,612...42,188,294
Ensembl chr 4:42,186,612...42,188,289
JBrowse link
G Rbmy1j RNA binding motif protein, Y-linked, family 1, member J IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  Y:380,337...390,669
Ensembl chr  Y:380,382...390,667
JBrowse link
G Sf3b4 splicing factor 3b, subunit 4 ISO
IBA
(MGI:MGI:5532638|PMID:23636947)
PMID:21873635
RGD PMID:23636947, PMID:21873635 MGI:MGI:5532638, RGD:13792537 NCBI chr 2:198,312,428...198,317,180
Ensembl chr 2:198,312,428...198,317,180
JBrowse link
G Slc39a5 solute carrier family 39 member 5 ISO (MGI:MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:MGI:5532638 NCBI chr 7:2,813,875...2,819,917
Ensembl chr 7:2,813,875...2,819,299
JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 ISO (MGI:MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:MGI:5532638 NCBI chr 1:101,367,470...101,388,153
Ensembl chr 1:101,367,471...101,388,129
JBrowse link
G Snw1 SNW domain containing 1 ISO (PMID:12840015) RGD PMID:12840015 NCBI chr 6:111,483,698...111,507,782
Ensembl chr 6:111,483,703...111,507,782
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 ISO
ISS
(PMID:20123736)
GO_REF:0000024
RGD
UniProt
PMID:20123736 GO_REF:0000024 NCBI chr 5:144,178,248...144,221,318
Ensembl chr 5:144,179,023...144,221,263
JBrowse link
G Tra2a transformer 2 alpha homolog ISO
IBA
(MGI:MGI:5304203|PMID:22194695)
PMID:21873635
RGD PMID:22194695, PMID:21873635 MGI:MGI:5304203, RGD:13792537 NCBI chr 4:78,905,380...78,924,203
Ensembl chr 4:78,905,380...78,924,181
JBrowse link
G Tra2b transformer 2 beta homolog ISO
IBA
ISS
MGI:MGI:2176173|MGI:MGI:4450919 (MGI:MGI:5304203|PMID:22194695)
PMID:21873635
GO_REF:0000024
(PMID:15009664)
RGD
UniProt
PMID:15009664, PMID:22194695, PMID:21873635 GO_REF:0000024, MGI:MGI:5304203, RGD:13792537 NCBI chr11:82,373,828...82,392,208
Ensembl chr11:82,373,870...82,392,083
JBrowse link
G Zfp64 zinc finger protein 64 ISO (MGI:MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:MGI:5532638 NCBI chr 3:165,713,070...165,741,932
Ensembl chr 3:165,713,020...165,741,967
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    positive regulation of biological process 6667
      positive regulation of metabolic process 4083
        positive regulation of macromolecule metabolic process 3765
          positive regulation of gene expression 2524
            positive regulation of mRNA processing 39
              positive regulation of mRNA 3'-end processing + 11
              positive regulation of mRNA splicing, via spliceosome + 28
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      cellular metabolic process 11065
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                RNA processing 925
                  mRNA processing 449
                    regulation of mRNA processing 164
                      positive regulation of mRNA processing 39
                        positive regulation of mRNA 3'-end processing + 11
                        positive regulation of mRNA splicing, via spliceosome + 28
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.