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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of phagocytosis
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Accession:GO:0050764 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of phagocytosis, the process in which phagocytes engulf external particulate material.


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regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgr FGR proto-oncogene, Src family tyrosine kinase ISO
ISS
(MGI:MGI:3640451|PMID:11672534)
GO_REF:0000024
RGD
UniProt
PMID:11672534 GO_REF:0000024, MGI:MGI:3640451 NCBI chr 5:151,172,189...151,199,746
Ensembl chr 5:151,172,206...151,199,745
JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase ISO
ISS
(PMID:11904303)
GO_REF:0000024
RGD
UniProt
PMID:11904303 GO_REF:0000024 NCBI chr 3:148,579,917...148,623,026
Ensembl chr 3:148,579,920...148,623,033
JBrowse link
G Itgav integrin subunit alpha V ISO (PMID:10570297) RGD PMID:10570297 NCBI chr 3:71,113,269...71,205,958
Ensembl chr 3:71,114,100...71,202,411
JBrowse link
G Olfm4 olfactomedin 4 NOT ISO (PMID:23922742) RGD PMID:23922742 NCBI chr15:62,384,263...62,429,450
Ensembl chr15:62,406,873...62,429,449
JBrowse link
G Pot1b protection of telomeres 1B IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 9:7,845,697...7,902,270
Ensembl chr 9:7,845,845...7,891,514
JBrowse link
G Prkcg protein kinase C, gamma ISO (MGI:MGI:3037226|PMID:15006698) RGD PMID:15006698 MGI:MGI:3037226 NCBI chr 1:64,407,098...64,433,698
Ensembl chr 1:64,407,114...64,433,636
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C ISO (PMID:12100025) RGD PMID:12100025 NCBI chr13:55,061,561...55,174,150
Ensembl chr13:55,061,562...55,173,692
JBrowse link
G Scarb1 scavenger receptor class B, member 1 TAS
IDA
RGD PMID:10026214, PMID:12016218 RGD:1304217, RGD:1304245 NCBI chr12:36,694,952...36,761,445
Ensembl chr12:36,694,960...36,761,455
JBrowse link
G Sphk1 sphingosine kinase 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:6158194|PMID:29662056)
UniProt
RGD
PMID:29662056 GO_REF:0000024, MGI:MGI:6158194 NCBI chr10:105,498,728...105,504,401
Ensembl chr10:105,498,728...105,504,393
JBrowse link
G Syk spleen associated tyrosine kinase IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:4414596|PMID:19797524)
Ensembl
UniProt
RGD
PMID:19797524 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4414596 NCBI chr17:12,614,311...12,669,568
Ensembl chr17:12,614,311...12,669,573
JBrowse link
G Syt7 synaptotagmin 7 ISO
ISS
(MGI:MGI:3690533|PMID:16982801)
GO_REF:0000024
RGD
UniProt
PMID:16982801 GO_REF:0000024, MGI:MGI:3690533 NCBI chr 1:226,435,816...226,498,008
Ensembl chr 1:226,435,979...226,493,377
JBrowse link
negative regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd300lf Cd300 molecule-like family member F ISO
ISS
(MGI:MGI:5819329|PMID:26768664)
GO_REF:0000024
RGD
UniProt
PMID:26768664 GO_REF:0000024, MGI:MGI:5819329 NCBI chr10:103,669,781...103,690,584
Ensembl chr10:103,670,028...103,687,425
JBrowse link
G Hmgb1 high mobility group box 1 ISO (PMID:20826760) RGD PMID:20826760 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
negative regulation of Fc-gamma receptor signaling pathway involved in phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 ISO (MGI:MGI:6271154|PMID:25568335) RGD PMID:25568335 MGI:MGI:6271154 NCBI chr16:2,560,103...2,602,035
Ensembl chr16:2,563,520...2,602,103
JBrowse link
G Cd47 Cd47 molecule IMP PMID:21401967 ARUK-UCL PMID:21401967 RGD:13792533 NCBI chr11:53,511,485...53,575,754
Ensembl chr11:53,514,595...53,575,175
JBrowse link
negative regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing ISO
ISS
(PMID:10961870)
GO_REF:0000024
RGD
UniProt
PMID:10961870 GO_REF:0000024 NCBI chr11:81,330,845...81,344,488
Ensembl chr11:81,330,293...81,344,488
JBrowse link
G Atg3 autophagy related 3 ISO (MGI:MGI:5562485|PMID:24035364) RGD PMID:24035364 MGI:MGI:5562485 NCBI chr11:60,585,192...60,613,706
Ensembl chr11:60,585,171...60,613,718
JBrowse link
G Atg5 autophagy related 5 ISO
IEA
(MGI:MGI:5562485|PMID:24035364)
GO_REF:0000107
RGD
Ensembl
PMID:24035364 GO_REF:0000107, MGI:MGI:5562485 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140
JBrowse link
G Atg7 autophagy related 7 ISO MGI:MGI:1934631|MGI:MGI:3587769 (MGI:MGI:5562485|PMID:24035364) RGD PMID:24035364 MGI:MGI:5562485 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124
JBrowse link
G Cnn2 calponin 2 ISO MGI:MGI:3820422 (MGI:MGI:3819912|PMID:18617524) RGD PMID:18617524 MGI:MGI:3819912 NCBI chr 7:12,782,459...12,787,977
Ensembl chr 7:12,782,491...12,787,750
JBrowse link
G Csk C-terminal Src kinase IDA RGD PMID:10884975 RGD:5134370 NCBI chr 8:62,405,714...62,424,707
Ensembl chr 8:62,405,715...62,424,303
JBrowse link
G Dysf dysferlin ISO
IBA
MGI:MGI:1857883 (MGI:MGI:3775586|PMID:18276788)
PMID:21873635
(PMID:18276788)
RGD PMID:18276788, PMID:21873635 MGI:MGI:3775586, RGD:13792537 NCBI chr 4:115,700,942...115,901,873
Ensembl chr 4:115,712,850...115,901,873
JBrowse link
G Fcgr2b Fc fragment of IgG receptor IIb ISO MGI:MGI:1857166 (MGI:MGI:3608295|PMID:12385742) RGD PMID:12385742 MGI:MGI:3608295 NCBI chr13:89,329,298...89,343,916
Ensembl chr13:89,327,794...89,433,815
JBrowse link
G Fer1l5 fer-1-like family member 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:42,943,362...42,998,126
Ensembl chr 9:42,945,358...42,998,109
JBrowse link
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 ISS
ISO
GO_REF:0000024
(MGI:MGI:6144310|PMID:29378918)
UniProt
RGD
PMID:29378918 GO_REF:0000024, MGI:MGI:6144310 NCBI chr 5:28,395,517...28,442,924
Ensembl chr 5:28,395,296...28,442,924
JBrowse link
G Plscr1 phospholipid scramblase 1 ISO
ISS
(PMID:26745724)
GO_REF:0000024
RGD
UniProt
PMID:26745724 GO_REF:0000024 NCBI chr 8:99,625,523...99,645,882
Ensembl chr 8:99,625,545...99,725,217
JBrowse link
G Prtn3 proteinase 3 ISO (PMID:17712045) RGD PMID:17712045 NCBI chr 7:12,643,712...12,646,951
Ensembl chr 7:12,643,516...12,646,960
JBrowse link
G Pten phosphatase and tensin homolog IMP RGD PMID:18056380 RGD:2292524 NCBI chr 1:251,421,814...251,487,634
Ensembl chr 1:251,421,596...251,487,832
JBrowse link
G Rack1 receptor for activated C kinase 1 ISO
ISS
(PMID:21347310)
GO_REF:0000024
RGD
UniProt
PMID:21347310 GO_REF:0000024 NCBI chr10:34,149,717...34,155,198
Ensembl chr10:34,149,717...34,155,198
Ensembl chr12:34,149,717...34,155,198
JBrowse link
G Sftpd surfactant protein D IDA RGD PMID:12654779 RGD:4144053 NCBI chr16:18,753,535...18,766,100
Ensembl chr16:18,745,458...18,766,174
JBrowse link
G Siglec1 sialic acid binding Ig like lectin 1 ISO (PMID:22630829) RGD PMID:22630829 NCBI chr 3:123,612,067...123,631,718
Ensembl chr 3:123,612,067...123,631,109
JBrowse link
G Sirpa signal-regulatory protein alpha IMP
IEA
ISO
PMID:21401967
GO_REF:0000107
(MGI:MGI:6201881|PMID:21401967)
Ensembl
RGD
PMID:21401967, PMID:21401967 GO_REF:0000107, MGI:MGI:6201881, RGD:13792533 NCBI chr 3:122,113,735...122,152,478
Ensembl chr 3:122,114,108...122,152,477
JBrowse link
G Snx3 sorting nexin 3 ISO
ISS
(PMID:23237080)
GO_REF:0000024
RGD
UniProt
PMID:23237080 GO_REF:0000024 NCBI chr20:47,225,382...47,263,390
Ensembl chr20:47,225,619...47,263,390
JBrowse link
G Syt11 synaptotagmin 11 ISS
ISO
GO_REF:0000024
(MGI:MGI:5468041|PMID:23303671), (MGI:MGI:5913303|PMID:28686317)
UniProt
RGD
PMID:23303671, PMID:28686317 GO_REF:0000024, MGI:MGI:5468041, MGI:MGI:5913303 NCBI chr 2:188,112,301...188,138,180
Ensembl chr 2:188,112,286...188,138,177
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IDA RGD PMID:16272332 RGD:1579756 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tlr2 toll-like receptor 2 ISO UniProtKB:P05067|UniProtKB:P49768 (MGI:MGI:5307186|PMID:22198949) RGD PMID:22198949 MGI:MGI:5307186 NCBI chr 2:182,840,171...182,846,061
Ensembl chr 2:182,840,727...182,846,061
JBrowse link
negative regulation of phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd300a Cd300a molecule ISO (PMID:22302738) RGD PMID:22302738 NCBI chr10:103,437,978...103,451,170
Ensembl chr10:103,438,303...103,450,947
JBrowse link
G Siglec8 sialic acid binding Ig-like lectin 8 ISO (MGI:MGI:5529741|PMID:24227736) RGD PMID:24227736 MGI:MGI:5529741 NCBI chr 1:99,576,946...99,587,441
Ensembl chr 1:99,578,372...99,587,205
JBrowse link
positive regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2 complement C2 ISO (PMID:19302245) RGD PMID:19302245 NCBI chr20:4,542,340...4,561,152
Ensembl chr20:4,542,340...4,561,152
JBrowse link
G C3 complement C3 ISO
IEA
(PMID:19302245)
GO_REF:0000107
RGD
Ensembl
PMID:19302245 GO_REF:0000107 NCBI chr 9:9,721,137...9,747,084
Ensembl chr 9:9,721,105...9,747,167
JBrowse link
G C4a complement C4A ISO UniProtKB:P0C0L5 (PMID:19302245) RGD PMID:19302245 NCBI chr20:2,651,599...2,678,183
Ensembl chr20:2,651,599...2,678,141
JBrowse link
G C4b complement C4B (Chido blood group) ISO UniProtKB:P0C0L4|UniProtKB:P0C0L5 (PMID:19302245) RGD PMID:19302245 NCBI chr20:4,302,344...4,316,752
Ensembl chr20:4,302,344...4,316,715
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 ISO (MGI:MGI:4943793|PMID:20691665) RGD PMID:20691665 MGI:MGI:4943793 NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
JBrowse link
G Cd300lf Cd300 molecule-like family member F ISS
ISO
GO_REF:0000024
(MGI:MGI:5301804|PMID:21865548), (MGI:MGI:5819329|PMID:26768664)
UniProt
RGD
PMID:21865548, PMID:26768664 GO_REF:0000024, MGI:MGI:5301804, MGI:MGI:5819329 NCBI chr10:103,669,781...103,690,584
Ensembl chr10:103,670,028...103,687,425
JBrowse link
positive regulation of engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 ISO
ISS
(MGI:MGI:3662940|PMID:16908670)
GO_REF:0000024
RGD
Alzheimers_University_of_Toronto
PMID:16908670 GO_REF:0000024, MGI:MGI:3662940 NCBI chr 7:12,742,433...12,762,423
Ensembl chr 7:12,742,433...12,762,341
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 ISO (PMID:24990881) RGD PMID:24990881 NCBI chr 9:14,611,541...14,618,076
Ensembl chr 9:14,611,561...14,618,013
JBrowse link
positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 ISO (MGI:MGI:6271154|PMID:25568335) RGD PMID:25568335 MGI:MGI:6271154 NCBI chr 7:26,256,179...26,306,128
Ensembl chr 7:26,256,459...26,306,126
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C ISO UniProtKB:Q64455 (MGI:MGI:3774343|PMID:18249142) RGD PMID:18249142 MGI:MGI:3774343 NCBI chr13:55,061,561...55,174,150
Ensembl chr13:55,061,562...55,173,692
JBrowse link
G Ptprj protein tyrosine phosphatase, receptor type, J ISO UniProtKB:P06800 (MGI:MGI:3774343|PMID:18249142) RGD PMID:18249142 MGI:MGI:3774343 NCBI chr 3:79,233,519...79,390,956
Ensembl chr 3:79,233,525...79,390,956
JBrowse link
G Rap1a RAP1A, member of RAS oncogene family IMP RGD PMID:18832707 RGD:9835043 NCBI chr 2:208,193,950...208,215,186
Ensembl chr 2:208,193,954...208,215,187
JBrowse link
G Rapgef1 Rap guanine nucleotide exchange factor 1 IMP RGD PMID:18832707 RGD:9835043 NCBI chr 3:8,189,594...8,307,077
Ensembl chr 3:8,192,575...8,304,976
JBrowse link
positive regulation of opsonization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo18a myosin XVIIIa ISO
IEA
(PMID:21123169)
GO_REF:0000107
(MGI:MGI:5810257|PMID:21123169)
RGD
Ensembl
PMID:21123169 GO_REF:0000107, MGI:MGI:5810257 NCBI chr10:64,979,770...65,080,535
Ensembl chr10:64,979,770...65,080,535
JBrowse link
G Pla2g5 phospholipase A2, group V ISS
ISO
GO_REF:0000024
(MGI:MGI:3841317|PMID:19342668)
UniProt
RGD
PMID:19342668 GO_REF:0000024, MGI:MGI:3841317 NCBI chr 5:157,247,601...157,268,968
Ensembl chr 5:157,247,781...157,268,903
JBrowse link
positive regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006142.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:223,214,132...223,263,133 JBrowse link
G AABR07006691.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:248,428,099...248,463,139 JBrowse link
G AABR07008876.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:77,084,222...77,112,499 JBrowse link
G Abca7 ATP binding cassette subfamily A member 7 ISS
ISO
GO_REF:0000024
(MGI:MGI:5553241|PMID:20495215), (MGI:MGI:6271506|PMID:27472885)
Alzheimers_University_of_Toronto
RGD
PMID:20495215, PMID:27472885 GO_REF:0000024, MGI:MGI:5553241, MGI:MGI:6271506 NCBI chr 7:12,742,433...12,762,423
Ensembl chr 7:12,742,433...12,762,341
JBrowse link
G Abr ABR activator of RhoGEF and GTPase ISO
IEA
MGI:MGI:88141 (MGI:MGI:3698699|PMID:17116687)
GO_REF:0000107
RGD
Ensembl
PMID:17116687 GO_REF:0000107, MGI:MGI:3698699 NCBI chr10:64,565,121...64,657,079
Ensembl chr10:64,567,268...64,657,089
JBrowse link
G Ahsg alpha-2-HS-glycoprotein ISO
ISS
(PMID:12725640)
GO_REF:0000024
RGD
UniProt
PMID:12725640 GO_REF:0000024 NCBI chr11:81,711,269...81,717,594 JBrowse link
G Apoa1 apolipoprotein A1 ISS
ISO
GO_REF:0000024
(PMID:20495215)
UniProt
RGD
PMID:20495215 GO_REF:0000024 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Apoa2 apolipoprotein A2 ISS
ISO
GO_REF:0000024
(PMID:20495215)
UniProt
RGD
PMID:20495215 GO_REF:0000024 NCBI chr13:89,596,872...89,598,805
Ensembl chr13:89,597,138...89,598,802
JBrowse link
G Bcr BCR activator of RhoGEF and GTPase ISO MGI:MGI:107771 (MGI:MGI:3698699|PMID:17116687) RGD PMID:17116687 MGI:MGI:3698699 NCBI chr20:14,421,250...14,546,406
Ensembl chr20:14,421,141...14,545,772
JBrowse link
G C3 complement C3 ISO MGI:MGI:1861799 (MGI:MGI:2177393|PMID:11901193) RGD PMID:11901193 MGI:MGI:2177393 NCBI chr 9:9,721,137...9,747,084
Ensembl chr 9:9,721,105...9,747,167
JBrowse link
G Calr calreticulin ISO (MGI:MGI:3813433|PMID:17187072) RGD PMID:17187072 MGI:MGI:3813433 NCBI chr19:25,956,771...25,961,666
Ensembl chr19:25,956,771...25,961,666
JBrowse link
G Camk1d calcium/calmodulin-dependent protein kinase ID ISO (PMID:15840691) RGD PMID:15840691 NCBI chr17:76,532,611...76,938,956
Ensembl chr17:76,532,611...76,938,956
JBrowse link
G Cd36 CD36 molecule IMP RGD PMID:23238794 RGD:8696010 NCBI chr 4:14,150,309...14,191,498
Ensembl chr 4:14,001,761...14,249,749
JBrowse link
G Cd47 Cd47 molecule ISO
IBA
IEA
IMP
(MGI:MGI:2680858|PMID:14634079)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:14634079, PMID:21873635, PMID:23238794 GO_REF:0000107, MGI:MGI:2680858, RGD:13792537, RGD:8696010 NCBI chr11:53,511,485...53,575,754
Ensembl chr11:53,514,595...53,575,175
JBrowse link
G Clec4m C-type lectin domain family 4 member M ISO (MGI:MGI:3027358|PMID:14707091) RGD PMID:14707091 MGI:MGI:3027358 NCBI chr12:2,817,633...2,826,303
Ensembl chr12:2,816,065...2,826,378
JBrowse link
G Clec7a C-type lectin domain containing 7A ISO
IBA
(PMID:19358895)
PMID:21873635
RGD PMID:19358895, PMID:21873635 RGD:13792537 NCBI chr 4:163,216,152...163,227,367
Ensembl chr 4:163,216,163...163,227,334
JBrowse link
G Cyba cytochrome b-245 alpha chain ISO (PMID:22423966) RGD PMID:22423966 NCBI chr19:55,249,634...55,257,824
Ensembl chr19:55,249,616...55,257,876
JBrowse link
G Dnm2 dynamin 2 IMP RGD PMID:12802072 RGD:9685290 NCBI chr 8:22,458,869...22,540,649
Ensembl chr 8:22,458,899...22,540,524
JBrowse link
G Dock2 dedicator of cytokinesis 2 ISO (MGI:MGI:5291858|PMID:21892172) RGD PMID:21892172 MGI:MGI:5291858 NCBI chr10:19,181,512...19,603,171 JBrowse link
G Fcer1g Fc fragment of IgE receptor Ig ISO
IBA
MGI:MGI:1857165|MGI:MGI:2384004 (MGI:MGI:2177393|PMID:11901193), (MGI:MGI:2679189|PMID:11911823), (MGI:MGI:2683721|PMID:11237803)
PMID:21873635
RGD PMID:11237803, PMID:11901193, PMID:11911823, PMID:21873635 MGI:MGI:2177393, MGI:MGI:2679189, MGI:MGI:2683721, RGD:13792537 NCBI chr13:89,601,894...89,606,326
Ensembl chr13:89,601,896...89,606,326
JBrowse link
G Fcgr1a Fc fragment of IgG receptor Ia ISO MGI:MGI:2664927|MGI:MGI:2679238 (MGI:MGI:2664488|PMID:11911824), (MGI:MGI:2679188|PMID:9551950), (MGI:MGI:2679189|PMID:11911823) RGD PMID:9551950, PMID:11911823, PMID:11911824 MGI:MGI:2664488, MGI:MGI:2679188, MGI:MGI:2679189 NCBI chr 2:198,430,536...198,439,453
Ensembl chr 2:198,430,530...198,458,041
JBrowse link
G Fcgr2a Fc fragment of IgG receptor IIa ISO MGI:MGI:1861924 (MGI:MGI:2683747|PMID:9834201), (MGI:MGI:2683749|PMID:9743367), (MGI:MGI:82508|PMID:8769481) RGD PMID:8769481, PMID:9743367, PMID:9834201 MGI:MGI:2683747, MGI:MGI:2683749, MGI:MGI:82508 NCBI chr13:91,146,878...91,163,691
Ensembl chr13:91,168,973...91,198,036
Ensembl chr13:91,168,973...91,198,036
JBrowse link
G Fcgr2b Fc fragment of IgG receptor IIb ISO (MGI:MGI:82508|PMID:8769481) RGD PMID:8769481 MGI:MGI:82508 NCBI chr13:89,329,298...89,343,916
Ensembl chr13:89,327,794...89,433,815
JBrowse link
G Fpr2 formyl peptide receptor 2 ISO (PMID:25505240) RGD PMID:25505240 NCBI chr 1:59,800,558...59,809,507
Ensembl chr 1:59,800,984...59,802,401
JBrowse link
G Gas6 growth arrest specific 6 ISO
ISS
(PMID:18395422)
GO_REF:0000024
RGD
UniProt
PMID:18395422 GO_REF:0000024 NCBI chr16:81,213,364...81,243,824
Ensembl chr16:81,213,364...81,243,757
JBrowse link
G Gata2 GATA binding protein 2 IDA PMID:12933836 UniProt PMID:12933836 RGD:632788 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IMP RGD PMID:9886410 RGD:10059405 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Ifng interferon gamma ISO (MGI:MGI:4454469|PMID:20368278) RGD PMID:20368278 MGI:MGI:4454469 NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419
JBrowse link
G Ighg1 immunoglobulin heavy constant gamma 1 ISO (MGI:MGI:2177393|PMID:11901193), (MGI:MGI:2664488|PMID:11911824), (MGI:MGI:2679188|PMID:9551950), (MGI:MGI:2679189|PMID:11911823), (MGI:MGI:2683747|PMID:9834201), (MGI:MGI:2683749|PMID:9743367), (MGI:MGI:82508|PMID:8769481) RGD PMID:8769481, PMID:9551950, PMID:9743367, PMID:9834201, PMID:11901193, PMID:11911823, PMID:11911824 MGI:MGI:2177393, MGI:MGI:2664488, MGI:MGI:2679188, MGI:MGI:2679189, MGI:MGI:2683747, MGI:MGI:2683749, MGI:MGI:82508 NCBI chr 6:139,140,572...139,784,388
Ensembl chr 6:139,140,679...139,142,218
JBrowse link
G Il15 interleukin 15 ISS
ISO
GO_REF:0000024
(PMID:15123770)
UniProt
RGD
PMID:15123770 GO_REF:0000024 NCBI chr19:23,542,606...23,624,366
Ensembl chr19:23,542,889...23,554,594
JBrowse link
G Il15ra interleukin 15 receptor subunit alpha ISO (PMID:15123770) RGD PMID:15123770 NCBI chr17:70,451,861...70,481,838
Ensembl chr17:70,451,411...70,481,750
JBrowse link
G Il1b interleukin 1 beta ISO
IEA
(PMID:18201371)
GO_REF:0000107
RGD
Ensembl
PMID:18201371 GO_REF:0000107 NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
JBrowse link
G Il2rb interleukin 2 receptor subunit beta ISS
ISO
IEA
GO_REF:0000024
(PMID:15123770)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:15123770 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:119,701,338...119,716,238
Ensembl chr 7:119,701,251...119,716,238
JBrowse link
G Il2rg interleukin 2 receptor subunit gamma ISO (PMID:15123770) RGD PMID:15123770 NCBI chr  X:71,165,378...71,169,078
Ensembl chr  X:71,162,585...71,169,865
JBrowse link
G Itgb2 integrin subunit beta 2 ISO (PMID:25453580) RGD PMID:25453580 NCBI chr20:11,777,773...11,815,647
Ensembl chr20:11,777,783...11,815,647
JBrowse link
G Lman2 lectin, mannose-binding 2 ISO (PMID:22016386)
(MGI:MGI:5574292|PMID:22016386)
RGD PMID:22016386 MGI:MGI:5574292 NCBI chr17:9,798,136...9,815,820
Ensembl chr17:9,797,907...9,816,139
JBrowse link
G LOC100909879 tyrosine-protein phosphatase non-receptor type substrate 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:87,418,425...87,419,918
Ensembl chr 2:87,418,517...87,419,861
JBrowse link
G LOC100909964 tyrosine-protein phosphatase non-receptor type substrate 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:27,643,286...27,676,536
Ensembl chr13:27,645,677...27,653,839
JBrowse link
G LOC100909977 leukocyte surface antigen CD47-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:54,137,648...54,201,948
Ensembl chr11:54,137,639...54,190,184
JBrowse link
G Lrp1 LDL receptor related protein 1 IMP RGD PMID:19299462 RGD:13800552 NCBI chr 7:70,846,313...70,927,028
Ensembl chr 7:70,846,344...70,926,903
JBrowse link
G Lyar Ly1 antibody reactive ISO
IEA
ISS
(MGI:MGI:6107438|PMID:25735755)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:25735755 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6107438 NCBI chr14:77,308,211...77,321,931
Ensembl chr14:77,308,204...77,321,977
JBrowse link
G Mbl1 mannose binding lectin 1 ISO MGI:MGI:96924 (MGI:MGI:3577322|PMID:15148336) RGD PMID:15148336 MGI:MGI:3577322 NCBI chr16:18,736,154...18,742,193
Ensembl chr16:18,736,154...18,742,193
JBrowse link
G Mbl2 mannose binding lectin 2 ISO MGI:MGI:96923 (MGI:MGI:3577322|PMID:15148336) RGD PMID:15148336 MGI:MGI:3577322 NCBI chr 1:248,435,069...248,442,669
Ensembl chr 1:248,723,397...248,729,962
JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase ISO
IDA
(PMID:18395422) RGD PMID:18395422, PMID:11592982 RGD:69668 NCBI chr 3:121,235,230...121,340,932
Ensembl chr 3:121,235,119...121,342,444
JBrowse link
G Mex3b mex-3 RNA binding family member B ISO MGI:MGI:5638674 (MGI:MGI:5585359|PMID:24803656) RGD PMID:24803656 MGI:MGI:5585359 NCBI chr 1:144,831,523...144,835,758
Ensembl chr 1:144,831,523...144,835,747
JBrowse link
G Mfge8 milk fat globule EGF and factor V/VIII domain containing ISO
IEA
(MGI:MGI:2681272|PMID:12000961)
GO_REF:0000107
RGD
Ensembl
PMID:12000961 GO_REF:0000107, MGI:MGI:2681272 NCBI chr 1:140,845,478...140,860,882
Ensembl chr 1:140,845,465...140,860,894
JBrowse link
G Myh9 myosin, heavy chain 9 IMP RGD PMID:19117932 RGD:6902913 NCBI chr 7:118,740,005...118,792,507
Ensembl chr 7:118,741,110...118,792,625
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO MGI:MGI:3529594 (MGI:MGI:3839525|PMID:19139201) RGD PMID:19139201 MGI:MGI:3839525 NCBI chr19:19,342,061...19,389,366
Ensembl chr19:19,332,594...19,377,492
JBrowse link
G Pla2g5 phospholipase A2, group V ISS
ISO
GO_REF:0000024
(MGI:MGI:3639848|PMID:16407308)
UniProt
RGD
PMID:16407308 GO_REF:0000024, MGI:MGI:3639848 NCBI chr 5:157,247,601...157,268,968
Ensembl chr 5:157,247,781...157,268,903
JBrowse link
G Pros1 protein S IDA RGD PMID:15949798 RGD:2300013 NCBI chr 7:1,206,648...1,288,140
Ensembl chr 7:1,206,648...1,288,134
JBrowse link
G Ptk2 protein tyrosine kinase 2 IMP RGD PMID:12912913 RGD:1299194 NCBI chr 7:114,436,419...114,611,317
Ensembl chr 7:114,437,361...114,590,119
JBrowse link
G Ptx3 pentraxin 3 ISO (MGI:MGI:3037598|PMID:14726497) RGD PMID:14726497 MGI:MGI:3037598 NCBI chr 2:158,097,843...158,103,653
Ensembl chr 2:158,097,843...158,103,653
JBrowse link
G Pycard PYD and CARD domain containing ISO (MGI:MGI:5291858|PMID:21892172) RGD PMID:21892172 MGI:MGI:5291858 NCBI chr 1:199,438,029...199,439,062
Ensembl chr 1:199,437,832...199,439,210
JBrowse link
G Rab27a RAB27A, member RAS oncogene family ISO (PMID:24404184) RGD PMID:24404184 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Rap1gap Rap1 GTPase-activating protein ISO (MGI:MGI:5585359|PMID:24803656) RGD PMID:24803656 MGI:MGI:5585359 NCBI chr 5:156,008,868...156,074,350
Ensembl chr 5:156,026,911...156,074,395
JBrowse link
G Sftpa1 surfactant protein A1 IDA RGD PMID:15187139 RGD:4144050 NCBI chr16:18,716,019...18,719,404
Ensembl chr16:18,716,019...18,719,403
JBrowse link
G Sftpd surfactant protein D IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:15591410, PMID:21873635 RGD:4144046, RGD:13792537 NCBI chr16:18,753,535...18,766,100
Ensembl chr16:18,745,458...18,766,174
JBrowse link
G Sirpa signal-regulatory protein alpha ISO
IBA
IEA
(MGI:MGI:2680858|PMID:14634079)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:14634079, PMID:21873635 GO_REF:0000107, MGI:MGI:2680858, RGD:13792537 NCBI chr 3:122,113,735...122,152,478
Ensembl chr 3:122,114,108...122,152,477
JBrowse link
G Sirpd signal-regulatory protein delta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:76,694,107...76,941,002
Ensembl chr 2:76,923,591...76,940,969
JBrowse link
G Slc11a1 solute carrier family 11 member 1 IEA
ISO
GO_REF:0000107
MGI:MGI:2446573 (MGI:MGI:3807860|PMID:18456389), (MGI:MGI:3839054|PMID:18984740)
Ensembl
RGD
PMID:18456389, PMID:18984740 GO_REF:0000107, MGI:MGI:3807860, MGI:MGI:3839054 NCBI chr 9:81,655,590...81,666,697
Ensembl chr 9:81,655,629...81,666,706
JBrowse link
G Sod1 superoxide dismutase 1 ISO RNAcentral:URS0000021B51_10090 (MGI:MGI:6271924|PMID:25381879) RGD PMID:25381879 MGI:MGI:6271924 NCBI chr11:30,363,282...30,368,858
Ensembl chr11:30,363,280...30,368,862
JBrowse link
G Tnf tumor necrosis factor ISO (PMID:18201371) RGD PMID:18201371 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
G Tub TUB bipartite transcription factor ISO
ISS
(PMID:19837063)
GO_REF:0000024
RGD
UniProt
PMID:19837063 GO_REF:0000024 NCBI chr 1:173,550,929...173,629,550
Ensembl chr 1:173,607,101...173,625,550
JBrowse link
G Tulp1 TUB like protein 1 ISO (PMID:19837063) RGD PMID:19837063 NCBI chr20:7,931,673...7,943,601
Ensembl chr20:7,931,674...7,943,575
JBrowse link
positive regulation of phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor IMP RGD PMID:23238794 RGD:8696010 NCBI chr20:4,363,152...4,366,079
Ensembl chr20:4,363,152...4,366,079
JBrowse link
G Ano6 anoctamin 6 ISO (MGI:MGI:5634870|PMID:25651887) RGD PMID:25651887 MGI:MGI:5634870 NCBI chr 7:137,142,063...137,335,208
Ensembl chr 7:137,142,170...137,335,208
JBrowse link
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 ISO (MGI:MGI:6271154|PMID:25568335) RGD PMID:25568335 MGI:MGI:6271154 NCBI chr 7:26,256,179...26,306,128
Ensembl chr 7:26,256,459...26,306,126
JBrowse link
G C3 complement C3 IEA
ISO
GO_REF:0000107
UniProtKB:P05555 (MGI:MGI:5319446|PMID:22438044), (MGI:MGI:5905548|PMID:20199584), (MGI:MGI:6189359|PMID:22632727)
Ensembl
RGD
PMID:20199584, PMID:22438044, PMID:22632727 GO_REF:0000107, MGI:MGI:5319446, MGI:MGI:5905548, MGI:MGI:6189359 NCBI chr 9:9,721,137...9,747,084
Ensembl chr 9:9,721,105...9,747,167
JBrowse link
G Cd36 CD36 molecule ISO MGI:MGI:2447190 (MGI:MGI:3587138|PMID:16061696) RGD PMID:16061696 MGI:MGI:3587138 NCBI chr 4:14,150,309...14,191,498
Ensembl chr 4:14,001,761...14,249,749
JBrowse link
G F2rl1 F2R like trypsin receptor 1 ISO (PMID:21501162) RGD PMID:21501162 NCBI chr 2:25,222,324...25,235,275
Ensembl chr 2:25,222,328...25,235,275
JBrowse link
G Fcgr1a Fc fragment of IgG receptor Ia IMP RGD PMID:19657115 RGD:9685698 NCBI chr 2:198,430,536...198,439,453
Ensembl chr 2:198,430,530...198,458,041
JBrowse link
G Gata2 GATA binding protein 2 IMP RGD PMID:12933836 RGD:632788 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Itga2 integrin subunit alpha 2 IMP RGD PMID:9284952 RGD:2307413 NCBI chr 2:46,996,904...47,097,011
Ensembl chr 2:47,000,323...47,096,961
JBrowse link
G Lbp lipopolysaccharide binding protein IDA RGD PMID:11104656 RGD:9685187 NCBI chr 3:154,786,232...154,812,910
Ensembl chr 3:154,786,215...154,813,464
JBrowse link
G Nckap1l NCK associated protein 1 like ISO
ISS
(MGI:MGI:3818191|PMID:19015308)
GO_REF:0000024
RGD
UniProt
PMID:19015308 GO_REF:0000024, MGI:MGI:3818191 NCBI chr 7:145,068,239...145,113,507
Ensembl chr 7:145,068,286...145,113,507
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IMP RGD PMID:15940641 RGD:8553017 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Rab31 RAB31, member RAS oncogene family ISS
ISO
GO_REF:0000024
(MGI:MGI:6271154|PMID:25568335)
UniProt
RGD
PMID:25568335 GO_REF:0000024, MGI:MGI:6271154 NCBI chr 9:113,370,072...113,504,606
Ensembl chr 9:113,370,033...113,504,605
JBrowse link
G Stap1 signal transducing adaptor family member 1 ISO (MGI:MGI:3831067|PMID:19100238) RGD PMID:19100238 MGI:MGI:3831067 NCBI chr14:23,575,400...23,604,984
Ensembl chr14:23,576,085...23,604,834
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 ISO (PMID:28855300)
(MGI:MGI:6304666|PMID:25631124)
RGD PMID:25631124, PMID:28855300 MGI:MGI:6304666 NCBI chr 9:14,611,541...14,618,076
Ensembl chr 9:14,611,561...14,618,013
JBrowse link
regulation of engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox15 arachidonate 15-lipoxygenase ISS
ISO
GO_REF:0000024
(MGI:MGI:5436199|PMID:22503541), (MGI:MGI:5508294|PMID:11278875)
UniProt
RGD
PMID:11278875, PMID:22503541 GO_REF:0000024, MGI:MGI:5436199, MGI:MGI:5508294 NCBI chr10:56,953,692...56,962,145
Ensembl chr10:56,953,691...56,962,161
JBrowse link
regulation of Fc-gamma receptor signaling pathway involved in phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcgr2a Fc fragment of IgG receptor IIa IMP RGD PMID:22184119, PMID:16482158 RGD:11041001, RGD:2293335 NCBI chr13:91,146,878...91,163,691
Ensembl chr13:91,168,973...91,198,036
Ensembl chr13:91,168,973...91,198,036
JBrowse link
regulation of opsonization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C4bpa complement component 4 binding protein, alpha IEA
ISO
GO_REF:0000107
(PMID:22333221)
Ensembl
RGD
PMID:22333221 GO_REF:0000107 NCBI chr13:47,342,090...47,377,580
Ensembl chr13:47,342,079...47,377,703
JBrowse link
G C4bpb complement component 4 binding protein, beta IEA
ISO
GO_REF:0000107
(PMID:22333221)
Ensembl
RGD
PMID:22333221 GO_REF:0000107 NCBI chr13:47,387,173...47,398,115
Ensembl chr13:47,387,173...47,397,890
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    regulation of biological process 13071
      regulation of cellular process 12560
        regulation of vesicle-mediated transport 641
          regulation of phagocytosis 120
            negative regulation of phagocytosis + 27
            positive regulation of phagocytosis + 85
            regulation of Fc-gamma receptor signaling pathway involved in phagocytosis + 8
            regulation of apoptotic cell clearance + 10
            regulation of opsonization + 4
            regulation of phagocytosis, engulfment + 19
Path 2
Term Annotations click to browse term
  biological_process 20014
    biological regulation 13759
      regulation of biological process 13071
        regulation of localization 3034
          regulation of transport 2028
            regulation of vesicle-mediated transport 641
              regulation of phagocytosis 120
                negative regulation of phagocytosis + 27
                positive regulation of phagocytosis + 85
                regulation of Fc-gamma receptor signaling pathway involved in phagocytosis + 8
                regulation of apoptotic cell clearance + 10
                regulation of opsonization + 4
                regulation of phagocytosis, engulfment + 19
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.