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ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular matrix binding
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Accession:GO:0050840 term browser browse the term
Definition:Interacting selectively and non-covalently with a component of the extracellular matrix.
Synonyms:exact_synonym: extracellular matrix constituent binding
 related_synonym: adhesive extracellular matrix constituent


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extracellular matrix binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 JBrowse link 8 31,977,001 32,000,378 RGD:1624291
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 JBrowse link 11 25,411,174 25,456,639 RGD:1624291
G Adgrg1 adhesion G protein-coupled receptor G1 JBrowse link 19 10,423,534 10,460,674 RGD:1600115
RGD:1624291
G Bgn biglycan JBrowse link X 157,319,042 157,331,204 RGD:1624291
G Ccn1 cellular communication network factor 1 JBrowse link 2 251,529,354 251,532,312 RGD:1624291
RGD:1600115
G Cd248 CD248 molecule JBrowse link 1 220,353,308 220,355,872 RGD:1624291
RGD:13792537
G Clec14a C-type lectin domain containing 14A JBrowse link 6 79,303,301 79,306,443 RGD:13792537
G Dcn decorin JBrowse link 7 38,742,250 38,782,282 RGD:1624291
G Dmp1 dentin matrix acidic phosphoprotein 1 JBrowse link 14 6,889,851 6,923,961 RGD:1624291
RGD:1600115
G Eln elastin JBrowse link 12 24,978,478 25,021,864 RGD:1624291
RGD:1600115
G Fbln2 fibulin 2 JBrowse link 4 122,835,237 122,895,127 RGD:1624291
RGD:13792537
G Itga2b integrin subunit alpha 2b JBrowse link 10 90,397,960 90,416,550 RGD:1624291
G Itgav integrin subunit alpha V JBrowse link 3 71,113,269 71,205,958 RGD:1624291
G Itgb3 integrin subunit beta 3 JBrowse link 10 92,667,869 92,783,413 RGD:1624291
G LOC100911932 endosialin-like JBrowse link 1 220,362,024 220,364,570 RGD:13792537
G LOC108348067 endosialin JBrowse link 1 220,446,433 220,448,979 RGD:13792537
G Nid1 nidogen 1 JBrowse link 17 90,553,161 90,627,133 RGD:1624291
G Olfml2a olfactomedin-like 2A JBrowse link 3 23,223,468 23,259,318 RGD:1624291
G Olfml2b olfactomedin-like 2B JBrowse link 13 88,995,301 89,032,487 RGD:1624291
G Sdc1 syndecan 1 JBrowse link 6 33,885,576 33,908,038 RGD:625750
G Smoc1 SPARC related modular calcium binding 1 JBrowse link 6 104,718,403 104,879,611 RGD:1624291
G Sparc secreted protein acidic and cysteine rich JBrowse link 10 40,742,390 40,764,232 RGD:1624291
RGD:13792537
G Sparcl1 SPARC like 1 JBrowse link 14 6,994,261 7,025,309 RGD:13792537
G Spock2 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 JBrowse link 20 29,654,926 29,679,927 RGD:1624291
RGD:13792537
G Spock3 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3 JBrowse link 16 28,372,067 28,716,762 RGD:13792537
G Spp1 secreted phosphoprotein 1 JBrowse link 14 6,673,686 6,679,965 RGD:1624291
RGD:13792537
G Ssc5d scavenger receptor cysteine rich family member with 5 domains JBrowse link 1 72,443,750 72,462,293 RGD:1624291
G Tgfbi transforming growth factor, beta induced JBrowse link 17 8,400,123 8,429,338 RGD:1624291
G Thbs1 thrombospondin 1 JBrowse link 3 109,862,120 109,873,466 RGD:1624291
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1624291
G Vtn vitronectin JBrowse link 10 65,767,960 65,771,040 RGD:1624291
G Zan zonadhesin JBrowse link 12 22,285,377 22,389,008 RGD:1624291
bone sialoprotein binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anxa2 annexin A2 JBrowse link 8 75,687,134 75,723,589 RGD:12911212
RGD:13792537
G Anxa9 annexin A9 JBrowse link 2 196,470,318 196,481,568 RGD:13792537
laminin binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ache acetylcholinesterase JBrowse link 12 22,472,358 22,477,052 RGD:1624291
RGD:1600115
G Adam9 ADAM metallopeptidase domain 9 JBrowse link 16 71,810,377 71,887,926 RGD:1624291
G Adgrg6 adhesion G protein-coupled receptor G6 JBrowse link 1 8,593,342 8,751,540 RGD:1624291
RGD:13792537
G Agrn agrin JBrowse link 5 173,589,910 173,622,813 RGD:1600115
G Bcam basal cell adhesion molecule (Lutheran blood group) JBrowse link 1 80,674,463 80,689,122 RGD:1624291
G Ctss cathepsin S JBrowse link 2 197,655,780 197,679,768 RGD:1624291
RGD:1600115
G Dag1 dystroglycan 1 JBrowse link 8 116,980,501 116,993,182 RGD:11541070
G Ecm1 extracellular matrix protein 1 JBrowse link 2 197,855,468 197,860,973 RGD:1624291
G Gpc1 glypican 1 JBrowse link 9 99,998,275 100,026,818 RGD:1600115
RGD:1624291
G Grm1 glutamate metabotropic receptor 1 JBrowse link 1 4,753,141 5,165,859 RGD:1600115
G Itga2 integrin subunit alpha 2 JBrowse link 2 46,996,904 47,097,011 RGD:2307408
G Itga3 integrin subunit alpha 3 JBrowse link 10 82,855,841 82,887,755 RGD:2325828
RGD:2325829
G Itga6 integrin subunit alpha 6 JBrowse link 3 58,442,904 58,515,124 RGD:1600017
G Itga7 integrin subunit alpha 7 JBrowse link 7 3,355,079 3,383,886 RGD:70774
RGD:1624291
RGD:1600026
G Itga9 integrin subunit alpha 9 JBrowse link 8 127,271,029 127,576,709 RGD:2317878
G Itgb1 integrin subunit beta 1 JBrowse link 19 61,677,512 61,725,537 RGD:2325290
RGD:13792537
RGD:1600115
RGD:1624291
RGD:2325829
G Lgals1 galectin 1 JBrowse link 7 120,153,184 120,156,290 RGD:2316546
RGD:13792537
G Lgals3 galectin 3 JBrowse link 15 24,153,602 24,165,537 RGD:1624291
RGD:13792537
RGD:1600115
G Lrrc15 leucine rich repeat containing 15 JBrowse link 11 74,040,846 74,052,179 RGD:1600115
RGD:1624291
G Lypd3 Ly6/Plaur domain containing 3 JBrowse link 1 81,499,856 81,504,306 RGD:8553808
RGD:13792537
G Lypd5 Ly6/Plaur domain containing 5 JBrowse link 1 81,202,832 81,213,928 RGD:13792537
G Ncl nucleolin JBrowse link 9 93,369,119 93,377,643 RGD:9686427
G Nid1 nidogen 1 JBrowse link 17 90,553,161 90,627,133 RGD:1624291
G Plekha2 pleckstrin homology domain containing A2 JBrowse link 16 71,725,649 71,784,432 RGD:1624291
G RGD1562885 similar to RIKEN cDNA 2300002M23 JBrowse link 20 3,689,608 3,691,164 RGD:1624291
G Rpsa ribosomal protein SA JBrowse link 8 128,806,053 128,809,987 RGD:1624291
G Ssc5d scavenger receptor cysteine rich family member with 5 domains JBrowse link 1 72,443,750 72,462,293 RGD:1624291
G Thbs1 thrombospondin 1 JBrowse link 3 109,862,120 109,873,466 RGD:1624291
G Tinagl1 tubulointerstitial nephritis antigen-like 1 JBrowse link 5 148,382,702 148,392,729 RGD:1624291
RGD:1600115
laminin-1 binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dag1 dystroglycan 1 JBrowse link 8 116,980,501 116,993,182 RGD:11541058
G Nid1 nidogen 1 JBrowse link 17 90,553,161 90,627,133 RGD:1624291
RGD:1600115
G Ntn4 netrin 4 JBrowse link 7 34,533,543 34,649,330 RGD:1624291
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:1624291
RGD:1600115
G Slit2 slit guidance ligand 2 JBrowse link 14 66,831,848 67,171,491 RGD:1600115
RGD:1624291
G Thbs4 thrombospondin 4 JBrowse link 2 22,343,727 22,385,855 RGD:1580072

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Term Annotations click to browse term
  molecular_function 19527
    binding 15910
      extracellular matrix binding 64
        bone sialoprotein binding 2
        host cell extracellular matrix binding 0
        laminin binding + 33
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.