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ONTOLOGY REPORT - ANNOTATIONS


Term:mRNA transport
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Accession:GO:0051028 term browser browse the term
Definition:The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.


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mRNA transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arc activity-regulated cytoskeleton-associated protein JBrowse link 7 115,907,097 115,911,059 RGD:13514080
G Casc3 CASC3 exon junction complex subunit JBrowse link 10 86,724,534 86,744,485 RGD:1600115
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 JBrowse link 1 143,171,457 143,278,485 RGD:9685156
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1600115
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1624291
RGD:1600115
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 7 144,865,302 144,871,592 RGD:1600115
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 JBrowse link 3 62,481,222 62,491,356 RGD:625404
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:6902916
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 JBrowse link 10 83,774,178 83,823,323 RGD:1600115
G Iws1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 18 24,849,508 24,891,339 RGD:1600115
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:1600115
G Kif5c kinesin family member 5C JBrowse link 3 35,014,157 35,257,417 RGD:1600115
RGD:1624291
G LOC100363294 stem-loop binding protein-like JBrowse link 18 27,550,426 27,557,699 RGD:13792537
G Lrpprc leucine-rich pentatricopeptide repeat containing JBrowse link 6 7,984,043 8,066,874 RGD:1600115
G Magoh mago homolog, exon junction complex subunit JBrowse link 5 127,480,465 127,487,617 RGD:1600115
G Mapt microtubule-associated protein tau JBrowse link 10 92,289,002 92,386,517 RGD:11061097
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:1600115
G Ndc1 NDC1 transmembrane nucleoporin JBrowse link 5 126,976,636 127,022,941 RGD:1600115
G Nup153 nucleoporin 153 JBrowse link 17 18,358,712 18,411,368 RGD:1600115
G Nup210 nucleoporin 210 JBrowse link 4 122,643,952 122,741,322 RGD:1600115
G Nup35 nucleoporin 35 JBrowse link 3 67,866,784 67,896,828 RGD:1600115
G Nup50 nucleoporin 50 JBrowse link 7 125,833,557 125,850,830 RGD:1600115
G Nup54 nucleoporin 54 JBrowse link 14 17,123,434 17,141,832 RGD:1600115
G Nup58 nucleoporin 58 JBrowse link 15 40,496,754 40,545,933 RGD:1600115
G Nup62 nucleoporin 62 JBrowse link 1 100,811,140 100,827,119 RGD:1600115
G Nup98 nucleoporin 98 and 96 precursor JBrowse link 1 167,213,866 167,308,851 RGD:1600115
G Nutf2 nuclear transport factor 2 JBrowse link 19 37,830,917 37,852,192 RGD:1600115
G Nxt2 nuclear transport factor 2-like export factor 2 JBrowse link X 113,509,841 113,517,112 RGD:1600115
G Pom121 POM121 transmembrane nucleoporin JBrowse link 12 24,316,575 24,341,943 RGD:1600115
G Qk quaking JBrowse link 1 50,983,647 51,050,692 RGD:1600115
G Rbm8a RNA binding motif protein 8A JBrowse link 2 198,755,261 198,758,028 RGD:1600115
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 4 145,686,186 145,699,577 RGD:1600115
G Senp2 SUMO specific peptidase 2 JBrowse link 11 82,627,973 82,664,702 RGD:1600115
G Slbp stem-loop binding protein JBrowse link 14 82,356,916 82,366,368 RGD:1624291
RGD:13792537
G Xpo1 exportin 1 JBrowse link 14 108,007,421 108,049,088 RGD:1600115
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:1624291
RGD:1600115
mRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07065139.1 RGD:13792537
G AABR07065139.2 RGD:13792537
G Alkbh5 alkB homolog 5, RNA demethylase JBrowse link 10 46,906,314 46,927,759 RGD:1624291
RGD:13792537
RGD:1600115
G Alyref Aly/REF export factor JBrowse link 10 109,768,593 109,774,639 RGD:1624291
G Chtop chromatin target of PRMT1 JBrowse link 2 189,887,850 189,900,079 RGD:1624291
G Da2-19 uncharacterized LOC302729 JBrowse link X 48,196,789 48,213,506 RGD:1600115
RGD:13792537
G Ddx25 DEAD-box helicase 25 JBrowse link 8 36,744,686 36,760,720 RGD:1600115
RGD:1624291
G Ddx39a DExD-box helicase 39A JBrowse link 19 24,846,530 24,854,886 RGD:1624291
RGD:13792537
G Ddx39b DExD-box helicase 39B JBrowse link 20 4,806,103 4,818,600 RGD:1624291
RGD:13792537
G Eif5a eukaryotic translation initiation factor 5A JBrowse link 10 56,527,075 56,531,615 RGD:1624291
G Fyttd1 forty-two-three domain containing 1 JBrowse link 11 71,113,931 71,136,694 RGD:1600115
RGD:13792537
RGD:1624291
G Gle1 GLE1 RNA export mediator JBrowse link 3 8,498,098 8,530,218 RGD:13792537
G Hhex hematopoietically expressed homeobox JBrowse link 1 256,101,994 256,107,581 RGD:1624291
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:9685424
RGD:1624291
RGD:1600115
RGD:9685477
G LOC679894 similar to THO complex subunit 2 (Tho2) JBrowse link 14 6,561,962 6,601,906 RGD:13792537
G Mcm3ap minichromosome maintenance complex component 3 associated protein JBrowse link 20 12,879,304 12,917,069 RGD:13792537
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1600115
RGD:13792537
RGD:1624291
G Nup107 nucleoporin 107 JBrowse link 7 60,781,724 60,825,225 RGD:1624291
RGD:13792537
RGD:1600115
RGD:8553287
G Nup133 nucleoporin 133 JBrowse link 19 56,681,965 56,731,404 RGD:1624291
G Nup155 nucleoporin 155 JBrowse link 2 57,206,665 57,258,242 RGD:1624291
RGD:1600115
G Nup160 nucleoporin 160 JBrowse link 3 79,496,239 79,562,163 RGD:1624291
G Nup214 nucleoporin 214 JBrowse link 3
3
9,227,869
10,993,584
9,236,878
11,070,638
RGD:1624291
G Nup85 nucleoporin 85 JBrowse link 10 104,118,999 104,137,258 RGD:13792537
G Nup88 nucleoporin 88 JBrowse link 10 57,581,828 57,606,171 RGD:13792537
G Nxf1 nuclear RNA export factor 1 JBrowse link 1 224,957,535 224,970,728 RGD:1600115
RGD:1624291
G Nxf3 nuclear RNA export factor 3 JBrowse link X 106,562,957 106,587,487 RGD:1624291
G Nxf7 nuclear RNA export factor 7 JBrowse link X 106,049,075 106,066,334 RGD:1624291
G Rae1 ribonucleic acid export 1 JBrowse link 3 171,012,984 171,030,392 RGD:1600115
G Rbm15b RNA binding motif protein 15B JBrowse link 8 115,618,242 115,623,068 RGD:1624291
G Sarnp SAP domain containing ribonucleoprotein JBrowse link 7 3,246,220 3,300,467 RGD:1624291
RGD:1600115
G Sem1 SEM1, 26S proteasome complex subunit JBrowse link 4 32,067,444 32,087,600 RGD:1600115
G Srsf3 serine and arginine rich splicing factor 3 JBrowse link 20 6,288,285 6,298,218 RGD:1624291
G Thoc1 THO complex 1 JBrowse link 18 1,142,540 1,177,084 RGD:1624291
G Thoc2 THO complex 2 JBrowse link X 128,153,824 128,268,327 RGD:1624291
RGD:13792537
G Thoc3 THO complex 3 JBrowse link 17 10,676,943 10,686,134 RGD:1624291
RGD:13792537
G Thoc5 THO complex 5 JBrowse link 14 85,138,219 85,171,729 RGD:1624291
RGD:13792537
G Thoc6 THO complex 6 JBrowse link 10 12,989,135 12,994,495 RGD:1624291
G Thoc7 THO complex 7 JBrowse link 15 12,569,235 12,584,101 RGD:1624291
RGD:13792537
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:13792537
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:1600115
RGD:1624291
mRNA export from nucleus in response to heat stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Polr2d RNA polymerase II subunit D JBrowse link 18 24,570,762 24,577,894 RGD:13792537
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:1624291
RGD:1600115
poly(A)+ mRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07065139.1 RGD:1600115
G AABR07065139.2 RGD:1600115
G Ddx19a DEAD-box helicase 19A JBrowse link 19 43,251,510 43,271,865 RGD:13792537
G Ddx19b DEAD-box helicase 19B JBrowse link 19 43,217,199 43,246,196 RGD:13792537
G Ddx25 DEAD-box helicase 25 JBrowse link 8 36,744,686 36,760,720 RGD:13792537
G Eny2 ENY2, transcription and export complex 2 subunit JBrowse link 7 83,348,656 83,358,430 RGD:13792537
RGD:1624291
G Gle1 GLE1 RNA export mediator JBrowse link 3 8,498,098 8,530,218 RGD:1600115
G Hhex hematopoietically expressed homeobox JBrowse link 1 256,101,994 256,107,581 RGD:1624291
G LOC500827 similar to hypothetical protein FLJ35821 JBrowse link 7 40,316,165 40,350,482 RGD:13792537
G Mcm3ap minichromosome maintenance complex component 3 associated protein JBrowse link 20 12,879,304 12,917,069 RGD:1624291
G Nup93 nucleoporin 93 JBrowse link 19 11,159,769 11,263,980 RGD:13792537
G Nxf1 nuclear RNA export factor 1 JBrowse link 1 224,957,535 224,970,728 RGD:1624291
RGD:13792537
RGD:1600115
G Nxf2 nuclear RNA export factor 2 JBrowse link X 105,772,718 105,793,324 RGD:13792537
G Nxf3 nuclear RNA export factor 3 JBrowse link X 106,562,957 106,587,487 RGD:1624291
RGD:13792537
G Nxf5 nuclear RNA export factor 5 JBrowse link X 106,229,474 106,253,226 RGD:13792537
G Nxf7 nuclear RNA export factor 7 JBrowse link X 106,049,075 106,066,334 RGD:1624291
RGD:13792537
G Pabpn1 poly(A) binding protein, nuclear 1 JBrowse link 15 33,555,640 33,560,251 RGD:1624291
G Pcid2 PCI domain containing 2 JBrowse link 16 81,757,582 81,783,047 RGD:13792537
G Poldip3 DNA polymerase delta interacting protein 3 JBrowse link 7 123,992,167 124,020,596 RGD:1624291
G Thoc2 THO complex 2 JBrowse link X 128,153,824 128,268,327 RGD:1624291
G Zc3h11a zinc finger CCCH-type containing 11A JBrowse link 13 50,196,042 50,234,862 RGD:1624291
RGD:13792537
regulation of mRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akap8l A-kinase anchoring protein 8 like JBrowse link 7 14,340,168 14,369,835 RGD:1624291
G Iws1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 18 24,849,508 24,891,339 RGD:1600115
RGD:13792537
RGD:1624291
G Nsun2 NOP2/Sun RNA methyltransferase 2 JBrowse link 1 36,295,650 36,319,906 RGD:1624291
G Setd2 SET domain containing 2, histone lysine methyltransferase JBrowse link 8 118,802,478 118,888,224 RGD:1624291
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 10 65,470,470 65,507,581 RGD:1624291
G Thoc2 THO complex 2 JBrowse link X 128,153,824 128,268,327 RGD:1624291
G Thoc5 THO complex 5 JBrowse link 14 85,138,219 85,171,729 RGD:1624291
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    localization 6457
      establishment of localization 4907
        establishment of RNA localization 151
          RNA transport 148
            mRNA transport 93
              mRNA export from nucleus + 57
Path 2
Term Annotations click to browse term
  biological_process 19858
    localization 6457
      establishment of localization 4907
        transport 4764
          organic substance transport 2613
            nucleobase-containing compound transport 220
              nucleic acid transport 148
                RNA transport 148
                  mRNA transport 93
                    mRNA export from nucleus + 57
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.