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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA binding
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Accession:GO:0051101 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid).


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regulation of DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor ISO
IEA
MGI:MGI:2451038 (MGI:MGI:3847400|PMID:18323529)
GO_REF:0000107
RGD
Ensembl
PMID:18323529 GO_REF:0000107, MGI:MGI:3847400 NCBI chr20:4,363,152...4,366,079
Ensembl chr20:4,363,152...4,366,079
JBrowse link
G Bcl3 BCL3, transcription coactivator ISO (PMID:9407099) RGD PMID:9407099 NCBI chr 1:80,730,758...80,745,273
Ensembl chr 1:80,730,499...80,744,831
JBrowse link
G Hjurp Holliday junction recognition protein ISO (PMID:21478274) RGD PMID:21478274 NCBI chr 9:95,347,739...95,362,228
Ensembl chr 9:95,349,086...95,362,014
JBrowse link
G Pax7 paired box 7 ISO MGI:MGI:1857831|MGI:MGI:3047633 (MGI:MGI:5440096|PMID:23070814) RGD PMID:23070814 MGI:MGI:5440096 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Runx1t1 RUNX1 partner transcriptional co-repressor 1 ISO (MGI:MGI:3511635|PMID:15509789) RGD PMID:15509789 MGI:MGI:3511635 NCBI chr 5:27,284,921...27,440,802
Ensembl chr 5:27,312,928...27,442,841
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 ISO MGI:MGI:2176946|MGI:MGI:3606185 (MGI:MGI:3806427|PMID:18722179) RGD PMID:18722179 MGI:MGI:3806427 NCBI chr 1:170,585,160...170,586,428
Ensembl chr 1:170,585,167...170,586,603
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO (MGI:MGI:3513643|PMID:15282343) RGD PMID:15282343 MGI:MGI:3513643 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
cohesin loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mau2 MAU2 sister chromatid cohesion factor ISO (PMID:22628566) RGD PMID:22628566 NCBI chr16:21,132,115...21,163,257
Ensembl chr16:21,132,147...21,163,257
JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO (PMID:22628566)
(MGI:MGI:6102971|PMID:29094699)
RGD PMID:22628566, PMID:29094699 MGI:MGI:6102971 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
negative regulation of core promoter binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Id2 inhibitor of DNA binding 2 ISO (MGI:MGI:4821067|PMID:17681138) RGD PMID:17681138 MGI:MGI:4821067 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Psen1 presenilin 1 ISO (PMID:10508860) RGD PMID:10508860 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
negative regulation of DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpne1 copine 1 ISO (PMID:18212740) RGD PMID:18212740 NCBI chr 3:151,617,733...151,625,448
NCBI chr 3:152,150,143...152,192,936
Ensembl chr 3:151,616,037...151,625,644
Ensembl chr 3:151,616,037...151,625,644
JBrowse link
G Ctnnbip1 catenin, beta-interacting protein 1 ISO (MGI:MGI:4821083|PMID:11751639) RGD PMID:11751639 MGI:MGI:4821083 NCBI chr 5:166,464,170...166,513,030
Ensembl chr 5:166,464,252...166,513,027
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 NOT IDA
ISO
PMID:8657121
UniProtKB:P21272 (MGI:MGI:85669|PMID:1547942)
RGD PMID:1547942, PMID:8657121 MGI:MGI:85669, RGD:1599740 NCBI chr 7:70,578,564...70,585,074
Ensembl chr 7:70,580,198...70,585,084
JBrowse link
G E2f1 E2F transcription factor 1 ISO
ISS
(PMID:20176812)
GO_REF:0000024
RGD
UniProt
PMID:20176812 GO_REF:0000024 NCBI chr 3:150,062,895...150,073,721
Ensembl chr 3:150,047,826...150,073,721
JBrowse link
G Gzma granzyme A ISO (PMID:12524539) RGD PMID:12524539 NCBI chr 2:44,968,846...44,981,436
Ensembl chr 2:44,968,765...44,981,458
JBrowse link
G Habp4 hyaluronan binding protein 4 ISO
ISS
(PMID:15862299) RGD PMID:15862299, PMID:15862299 RGD:8553316 NCBI chr17:1,679,561...1,702,245
Ensembl chr17:1,679,627...1,701,623
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 ISO
IEA
(MGI:MGI:3830408|PMID:19144722)
GO_REF:0000107
RGD
Ensembl
PMID:19144722 GO_REF:0000107, MGI:MGI:3830408 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Hdac2 histone deacetylase 2 IMP RGD PMID:21383775 RGD:9590238 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISS
ISO
GO_REF:0000024
(PMID:14645522), (PMID:19549901)
UniProt
RGD
PMID:14645522, PMID:19549901 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Hmox1 heme oxygenase 1 IDA RGD PMID:17234154 RGD:1601626 NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456
JBrowse link
G Hspa4 heat shock protein family A (Hsp70) member 4 IMP Rela RGD PMID:17473852 RGD:5688754 NCBI chr10:38,601,624...38,642,397
Ensembl chr10:38,601,624...38,642,397
JBrowse link
G Id1 inhibitor of DNA binding 1, HLH protein ISO
IMP
(MGI:MGI:66136|PMID:1922066) RGD PMID:1922066, PMID:7623812 MGI:MGI:66136, RGD:9686118 NCBI chr 3:148,214,623...148,216,715
Ensembl chr 3:148,215,540...148,216,718
JBrowse link
G Id2 inhibitor of DNA binding 2 ISO (MGI:MGI:66136|PMID:1922066) RGD PMID:1922066 MGI:MGI:66136 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains ISO (PMID:29802199) RGD PMID:29802199 NCBI chr20:7,331,321...7,397,588
Ensembl chr20:7,331,326...7,397,448
JBrowse link
G Jak2 Janus kinase 2 ISO (MGI:MGI:3703676|PMID:12388746) RGD PMID:12388746 MGI:MGI:3703676 NCBI chr 1:247,398,667...247,457,521
Ensembl chr 1:247,398,598...247,458,509
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO (PMID:14645924) RGD PMID:14645924 NCBI chr 5:114,011,184...114,014,277
Ensembl chr 5:114,011,189...114,014,277
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IEA
ISO
GO_REF:0000107
(PMID:18445004)
Ensembl
RGD
PMID:18445004 GO_REF:0000107 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Mdfi MyoD family inhibitor ISO (MGI:MGI:4441142|PMID:11238923) RGD PMID:11238923 MGI:MGI:4441142 NCBI chr 9:15,166,118...15,184,469
Ensembl chr 9:15,166,118...15,184,468
JBrowse link
G Msx1 msh homeobox 1 ISO (MGI:MGI:3697003|PMID:17030628) RGD PMID:17030628 MGI:MGI:3697003 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Nek2 NIMA-related kinase 2 ISO (MGI:MGI:3042303|PMID:14668482) RGD PMID:14668482 MGI:MGI:3042303 NCBI chr13:110,511,546...110,524,750
Ensembl chr13:110,511,668...110,522,769
JBrowse link
G Nfib nuclear factor I/B ISO (PMID:9099724) RGD PMID:9099724 NCBI chr 5:100,436,343...100,647,962
Ensembl chr 5:100,439,082...100,647,727
JBrowse link
G Rsf1 remodeling and spacing factor 1 ISO (PMID:12972596) RGD PMID:12972596 NCBI chr 1:162,549,222...162,671,962
Ensembl chr 1:162,549,420...162,662,170
JBrowse link
G Sirt1 sirtuin 1 IMP Rela RGD PMID:22044919 RGD:10047123 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Smo smoothened, frizzled class receptor ISO
ISS
IEA
MGI:MGI:95729 (MGI:MGI:3611729|PMID:16396903)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:16396903 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3611729 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Sp100 SP100 nuclear antigen ISO (PMID:15247905) RGD PMID:15247905 NCBI chr 9:92,675,103...92,718,489
Ensembl chr 9:92,681,078...92,717,929
JBrowse link
G Sumo1 small ubiquitin-like modifier 1 ISO (PMID:15637059), (PMID:16626738) RGD PMID:15637059, PMID:16626738 NCBI chr 9:66,453,428...66,483,614
Ensembl chr 9:66,453,438...66,483,614
JBrowse link
G Sumo3 small ubiquitin-like modifier 3 ISO (PMID:16626738) RGD PMID:16626738 NCBI chr20:11,726,488...11,737,050
Ensembl chr20:11,726,497...11,737,050
JBrowse link
G Sumo4 small ubiquitin-like modifier 4 ISO (PMID:16236267) RGD PMID:16236267 NCBI chr 5:14,983,382...14,984,134
Ensembl chr 5:14,983,371...14,984,364
JBrowse link
G Tfap4 transcription factor AP-4 ISO (PMID:16540471), (PMID:7933101) RGD PMID:7933101, PMID:16540471 NCBI chr10:11,204,616...11,222,975
Ensembl chr10:11,206,226...11,223,370
JBrowse link
G Twist2 twist family bHLH transcription factor 2 ISO (MGI:MGI:2683822|PMID:14654692) RGD PMID:14654692 MGI:MGI:2683822 NCBI chr 9:98,924,134...98,968,510
Ensembl chr 9:98,924,134...98,968,510
JBrowse link
G Wfikkn1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 ISO (MGI:MGI:5511086|PMID:24019467) RGD PMID:24019467 MGI:MGI:5511086 NCBI chr10:15,243,429...15,245,757
Ensembl chr10:15,243,429...15,245,757
JBrowse link
G Wfikkn2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 ISO (MGI:MGI:5511086|PMID:24019467) RGD PMID:24019467 MGI:MGI:5511086 NCBI chr10:81,936,156...81,943,142
Ensembl chr10:81,936,444...81,942,188
JBrowse link
G Zfp462 zinc finger protein 462 ISO (MGI:MGI:3709211|PMID:17353115) RGD PMID:17353115 MGI:MGI:3709211 NCBI chr 5:71,679,841...71,824,077
Ensembl chr 5:71,742,911...71,823,139
JBrowse link
G Zfp90 zinc finger protein 90 ISO (MGI:MGI:5009761|PMID:21284946) RGD PMID:21284946 MGI:MGI:5009761 NCBI chr19:38,597,657...38,608,951
Ensembl chr19:38,598,165...38,608,943
JBrowse link
negative regulation of double-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:18812185) RGD PMID:18812185 NCBI chr10:2,010,140...2,037,953
Ensembl chr10:2,010,648...2,037,891
JBrowse link
negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddit3 DNA-damage inducible transcript 3 ISO
IEA
(PMID:8622660)
GO_REF:0000107
RGD
Ensembl
PMID:8622660 GO_REF:0000107 NCBI chr 7:70,578,564...70,585,074
Ensembl chr 7:70,580,198...70,585,084
JBrowse link
G Enho energy homeostasis associated ISO MGI:MGI:5781010 (MGI:MGI:5693224|PMID:22318315) RGD PMID:22318315 MGI:MGI:5693224 NCBI chr 5:58,018,039...58,019,836
Ensembl chr 5:58,018,039...58,019,836
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO (MGI:MGI:3805393|PMID:18625840) RGD PMID:18625840 MGI:MGI:3805393 NCBI chr 2:184,230,191...184,309,805
Ensembl chr 2:184,231,260...184,309,664
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO (PMID:11802795) RGD PMID:11802795 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO (PMID:24289924) RGD PMID:24289924 NCBI chr  X:71,412,291...71,486,456
Ensembl chr  X:71,412,289...71,485,085
JBrowse link
G Tmsb4x thymosin beta 4, X-linked ISO (PMID:21343177) RGD PMID:21343177 NCBI chr  X:28,593,405...28,617,267
Ensembl chr  X:28,593,405...28,595,395
JBrowse link
G Zfp593 zinc finger protein 593 ISO UniProtKB:P09086 (PMID:9115366) RGD PMID:9115366 NCBI chr 5:152,462,522...152,464,850
Ensembl chr 5:152,462,522...152,464,850
JBrowse link
negative regulation of telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnks tankyrase ISO (PMID:25939383), (PMID:9822378) RGD PMID:9822378, PMID:25939383 NCBI chr16:60,925,093...61,067,192
Ensembl chr16:60,925,093...61,067,192
JBrowse link
negative regulation of transcription regulatory region DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd33 ankyrin repeat domain 33 ISO
IBA
(MGI:MGI:4431327|PMID:20026326)
PMID:21873635
RGD PMID:20026326, PMID:21873635 MGI:MGI:4431327, RGD:13792537 NCBI chr 7:142,755,896...142,759,666
Ensembl chr 7:142,756,312...142,759,629
JBrowse link
G Gata1 GATA binding protein 1 ISO (PMID:15920471) RGD PMID:15920471 NCBI chr  X:15,273,937...15,281,759
Ensembl chr  X:15,378,789...15,382,066
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO
IEA
(PMID:18239137)
GO_REF:0000107
RGD
Ensembl
PMID:18239137 GO_REF:0000107 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO (PMID:10692439)
(MGI:MGI:5284767|PMID:18239137)
RGD PMID:10692439, PMID:18239137 MGI:MGI:5284767 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Lhx2 LIM homeobox 2 ISO
IEA
MGI:MGI:97168 (MGI:MGI:1278140|PMID:9697309)
GO_REF:0000107
RGD
Ensembl
PMID:9697309 GO_REF:0000107, MGI:MGI:1278140 NCBI chr 3:22,628,674...22,658,447
Ensembl chr 3:22,640,545...22,658,446
JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 ISO (PMID:19443654) RGD PMID:19443654 NCBI chr 5:164,943,183...164,956,255
Ensembl chr 5:164,950,917...164,956,255
JBrowse link
G Msx1 msh homeobox 1 ISO MGI:MGI:96785 (MGI:MGI:1278140|PMID:9697309) RGD PMID:9697309 MGI:MGI:1278140 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Msx2 msh homeobox 2 IEA
ISO
GO_REF:0000107
(MGI:MGI:3050916|PMID:15175325), (MGI:MGI:5487530|PMID:20843790)
Ensembl
RGD
PMID:15175325, PMID:20843790 GO_REF:0000107, MGI:MGI:3050916, MGI:MGI:5487530 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Per2 period circadian regulator 2 ISO
ISS
(MGI:MGI:4881351|PMID:21035761)
GO_REF:0000024
RGD
UniProt
PMID:21035761 GO_REF:0000024, MGI:MGI:4881351 NCBI chr 9:98,555,154...98,597,362
Ensembl chr 9:98,555,169...98,597,359
JBrowse link
G Rest RE1-silencing transcription factor ISS
ISO
GO_REF:0000024
(MGI:MGI:6294407|PMID:10490617)
UniProt
RGD
PMID:10490617 GO_REF:0000024, MGI:MGI:6294407 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
G Sin3a SIN3 transcription regulator family member A ISO (PMID:22783022) RGD PMID:22783022 NCBI chr 8:61,748,590...61,803,314
Ensembl chr 8:61,762,768...61,803,099
JBrowse link
G Sox11 SRY-box transcription factor 11 IMP PMID:12637543 UniProt PMID:12637543 RGD:8554307 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Sri sorcin ISO (MGI:MGI:5487506|PMID:22338092) RGD PMID:22338092 MGI:MGI:5487506 NCBI chr 4:23,004,657...23,029,233
Ensembl chr 4:23,006,243...23,018,983
JBrowse link
positive regulation of core promoter binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
(PMID:22723415)
(MGI:MGI:5428344|PMID:22723415)
Ensembl
RGD
PMID:22723415 GO_REF:0000107, MGI:MGI:5428344 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Foxc1 forkhead box C1 ISO (MGI:MGI:5641778|PMID:25808752) RGD PMID:25808752 MGI:MGI:5641778 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Gtf2b general transcription factor IIB IEA
ISO
GO_REF:0000107
(PMID:9841876)
Ensembl
RGD
PMID:9841876 GO_REF:0000107 NCBI chr 2:248,709,433...248,727,741
Ensembl chr 2:248,715,281...248,727,741
JBrowse link
G Ifng interferon gamma ISO (PMID:23629966) RGD PMID:23629966 NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419
JBrowse link
G Klf4 Kruppel like factor 4 ISO (MGI:MGI:5428344|PMID:22723415) RGD PMID:22723415 MGI:MGI:5428344 NCBI chr 5:72,283,311...72,287,669
Ensembl chr 5:72,283,313...72,287,669
JBrowse link
G Pax6 paired box 6 ISS
ISO
IEA
GO_REF:0000024
(PMID:20725088)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:20725088 GO_REF:0000024, GO_REF:0000107 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Wnt3a Wnt family member 3A ISO (MGI:MGI:5428344|PMID:22723415) RGD PMID:22723415 MGI:MGI:5428344 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
positive regulation of DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd4 bromodomain containing 4 ISO (MGI:MGI:3590381|PMID:16109376) RGD PMID:16109376 MGI:MGI:3590381 NCBI chr 7:14,222,101...14,303,055
Ensembl chr 7:14,222,101...14,303,055
JBrowse link
G Calm1 calmodulin 1 ISO
IEA
(MGI:MGI:1331310|PMID:10049721)
GO_REF:0000107
RGD
Ensembl
PMID:10049721 GO_REF:0000107, MGI:MGI:1331310 NCBI chr 6:124,217,241...124,225,292
Ensembl chr 6:124,217,241...124,225,292
JBrowse link
G Calm2 calmodulin 2 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 6:11,067,675...11,080,078
Ensembl chr15:65,506,874...65,507,968
JBrowse link
G Calm3 calmodulin 3 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:78,844,520...78,851,628
Ensembl chr 1:78,843,080...78,851,719
JBrowse link
G Edf1 endothelial differentiation-related factor 1 ISO (PMID:10567391) RGD PMID:10567391 NCBI chr 3:2,781,169...2,785,474
Ensembl chr 3:2,781,169...2,785,474
JBrowse link
G Egf epidermal growth factor ISO
ISS
(MGI:MGI:5284803|PMID:15156153)
GO_REF:0000024
RGD
UniProt
PMID:15156153 GO_REF:0000024, MGI:MGI:5284803 NCBI chr 2:68,820,616...68,895,537 JBrowse link
G Ep300 E1A binding protein p300 IMP RGD PMID:19057620 RGD:2311715 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO MGI:MGI:2183949 (MGI:MGI:3771455|PMID:17952069) RGD PMID:17952069 MGI:MGI:3771455 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Foxc1 forkhead box C1 ISO (PMID:26565916) RGD PMID:26565916 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Hes1 hes family bHLH transcription factor 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5284803|PMID:15156153)
Ensembl
UniProt
RGD
PMID:15156153 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5284803 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:1303245|PMID:9748262) RGD PMID:9748262 MGI:MGI:1303245 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Hmgb1 high mobility group box 1 ISO (PMID:11748232), (PMID:19223331) RGD PMID:11748232, PMID:19223331 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Hmgb2 high mobility group box 2 ISO (MGI:MGI:72108|PMID:7720710)
(PMID:19965638)
RGD PMID:7720710, PMID:19965638 MGI:MGI:72108 NCBI chr16:36,077,615...36,080,191
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191
JBrowse link
G Igf1 insulin-like growth factor 1 ISO (PMID:19654000) RGD PMID:19654000 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Irf4 interferon regulatory factor 4 ISO (MGI:MGI:3615721|PMID:16428437) RGD PMID:16428437 MGI:MGI:3615721 NCBI chr17:34,886,746...34,905,191
Ensembl chr17:34,886,739...34,905,117
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO (MGI:MGI:3581490|PMID:15659653) RGD PMID:15659653 MGI:MGI:3581490 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Itga2 integrin subunit alpha 2 IMP DNA binding by NF-kappaB RGD PMID:19239475 RGD:2307394 NCBI chr 2:46,996,904...47,097,011
Ensembl chr 2:47,000,323...47,096,961
JBrowse link
G Jak2 Janus kinase 2 IMP Stat3 RGD PMID:15322111 RGD:1641932 NCBI chr 1:247,398,667...247,457,521
Ensembl chr 1:247,398,598...247,458,509
JBrowse link
G Mmp8 matrix metallopeptidase 8 IEA
ISO
GO_REF:0000107
(MGI:MGI:6201889|PMID:25049354)
Ensembl
RGD
PMID:25049354 GO_REF:0000107, MGI:MGI:6201889 NCBI chr 8:5,768,808...5,777,741
Ensembl chr 8:5,768,811...5,778,702
JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO
IEA
(PMID:22984561)
GO_REF:0000107
RGD
Ensembl
PMID:22984561 GO_REF:0000107 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IMP RGD PMID:12873812 RGD:10059626 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240
JBrowse link
G Myocd myocardin ISO
IEA
MGI:MGI:88192 (MGI:MGI:5007924|PMID:19342595)
GO_REF:0000107
RGD
Ensembl
PMID:19342595 GO_REF:0000107, MGI:MGI:5007924 NCBI chr10:51,682,053...51,781,458
Ensembl chr10:51,683,540...51,778,986
JBrowse link
G Ngf nerve growth factor ISO (MGI:MGI:6115179|PMID:10362258) RGD PMID:10362258 MGI:MGI:6115179 NCBI chr 2:204,886,158...204,939,523
Ensembl chr 2:204,886,202...204,940,453
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 ISO (PMID:17975005) RGD PMID:17975005 NCBI chr10:81,657,152...81,666,542
Ensembl chr10:81,657,153...81,666,523
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 IMP RGD PMID:11181516 RGD:2311195 NCBI chr12:9,496,044...9,501,211
Ensembl chr12:9,496,044...9,501,213
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO (MGI:MGI:3796777|PMID:18458156), (MGI:MGI:4881620|PMID:21035439) RGD PMID:18458156, PMID:21035439 MGI:MGI:3796777, MGI:MGI:4881620 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Plaur plasminogen activator, urokinase receptor ISO
IEA
(PMID:22984561)
GO_REF:0000107
RGD
Ensembl
PMID:22984561 GO_REF:0000107 NCBI chr 1:81,328,171...81,344,954
Ensembl chr 1:81,328,183...81,344,708
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma ISO UniProtKB:P19793 (PMID:19043829) RGD PMID:19043829 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO
ISS
(PMID:17314283)
GO_REF:0000024
RGD
ParkinsonsUK-UCL
PMID:17314283 GO_REF:0000024 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Sirt2 sirtuin 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5572869|PMID:17521387)
Ensembl
UniProt
RGD
PMID:17521387 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5572869 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952
JBrowse link
G Ski SKI proto-oncogene ISO (PMID:15107821) RGD PMID:15107821 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO MGI:MGI:2137495 (MGI:MGI:5007924|PMID:19342595) RGD PMID:19342595 MGI:MGI:5007924 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Sumo4 small ubiquitin-like modifier 4 ISO (PMID:16236267) RGD PMID:16236267 NCBI chr 5:14,983,382...14,984,134
Ensembl chr 5:14,983,371...14,984,364
JBrowse link
G Tlr4 toll-like receptor 4 IMP RGD PMID:16272348 RGD:1598594 NCBI chr 5:82,587,424...82,601,056
Ensembl chr 5:82,587,420...82,601,052
JBrowse link
G Trim28 tripartite motif-containing 28 ISO (MGI:MGI:3842857|PMID:19270682) RGD PMID:19270682 MGI:MGI:3842857 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
G Txn1 thioredoxin 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:11118054)
Ensembl
UniProt
RGD
PMID:11118054 GO_REF:0000024, GO_REF:0000107 NCBI chr 5:75,049,735...75,057,731
Ensembl chr 5:75,049,747...75,057,752
JBrowse link
positive regulation of mitotic cohesin loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nipbl NIPBL, cohesin loading factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddrgk1 DDRGK domain containing 1 ISO (PMID:23675531) RGD PMID:23675531 NCBI chr 3:123,195,580...123,206,828
Ensembl chr 3:123,195,580...123,206,828
JBrowse link
G Ep300 E1A binding protein p300 ISO (PMID:23811396) RGD PMID:23811396 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Lamtor5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 ISO (PMID:21343296) RGD PMID:21343296 NCBI chr 2:210,034,095...210,039,451
Ensembl chr 2:210,034,095...210,039,451
JBrowse link
positive regulation of single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD, shelterin complex subunit and telomerase recruitment factor ISO (PMID:17237767) RGD PMID:17237767 NCBI chr19:37,665,289...37,668,043
Ensembl chr19:37,665,296...37,667,987
JBrowse link
positive regulation of telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pinx1 PIN2/TERF1 interacting, telomerase inhibitor 1 ISO (PMID:19265708), (PMID:24415760) RGD PMID:19265708, PMID:24415760 NCBI chr15:47,211,682...47,270,343
Ensembl chr15:47,211,583...47,270,317
JBrowse link
positive regulation of transcription regulatory region DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 ISO
ISS
(PMID:20368097)
GO_REF:0000024
(MGI:MGI:4844227|PMID:20636338)
RGD
UniProt
PMID:20368097, PMID:20636338 GO_REF:0000024, MGI:MGI:4844227 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G H1f0 H1 histone family, member 0 ISO (PMID:19158276) RGD PMID:19158276 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 ISO
IEA
(PMID:16280598)
GO_REF:0000107
RGD
Ensembl
PMID:16280598 GO_REF:0000107 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Igf1 insulin-like growth factor 1 ISO
IEA
(PMID:15059951)
GO_REF:0000107
RGD
Ensembl
PMID:15059951 GO_REF:0000107 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Lgals9 galectin 9 ISO (MGI:MGI:5688819|PMID:25065622) RGD PMID:25065622 MGI:MGI:5688819 NCBI chr10:64,737,022...64,760,195
Ensembl chr10:64,737,022...64,760,201
JBrowse link
G Neurod1 neuronal differentiation 1 ISO (PMID:19619559) RGD PMID:19619559 NCBI chr 3:66,414,314...66,417,617
Ensembl chr 3:66,414,308...66,417,741
JBrowse link
G Niban2 niban apoptosis regulator 2 ISO (PMID:17569660) RGD PMID:17569660 NCBI chr 3:11,921,715...11,971,327
Ensembl chr 3:11,921,715...11,971,327
JBrowse link
G Park7 Parkinsonism associated deglycase ISO
IEA
(PMID:22492997)
GO_REF:0000107
RGD
Ensembl
PMID:22492997 GO_REF:0000107 NCBI chr 5:167,982,438...168,004,724
Ensembl chr 5:167,982,439...168,004,724
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 IMP PMID:22073128 BHF-UCL PMID:22073128 RGD:8554355 NCBI chr13:98,857,255...98,889,444
Ensembl chr13:98,857,177...98,889,716
JBrowse link
G Pou4f1 POU class 4 homeobox 1 ISO
IEA
ISS
(MGI:MGI:5825439|PMID:9448000)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:9448000 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5825439 NCBI chr15:88,618,255...88,622,712
Ensembl chr15:88,620,470...88,622,413
JBrowse link
G Pou4f2 POU class 4 homeobox 2 ISO
ISS
(MGI:MGI:5825439|PMID:9448000)
GO_REF:0000024
RGD
UniProt
PMID:9448000 GO_REF:0000024, MGI:MGI:5825439 NCBI chr19:33,160,180...33,163,821
Ensembl chr19:33,160,180...33,163,821
JBrowse link
G Rb1 RB transcriptional corepressor 1 ISO
IEA
(PMID:25100735)
GO_REF:0000107
RGD
Ensembl
PMID:25100735 GO_REF:0000107 NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO
ISS
(PMID:22073128)
GO_REF:0000024
RGD
UniProt
PMID:22073128 GO_REF:0000024 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Traf6 TNF receptor associated factor 6 ISO (PMID:11751921) RGD PMID:11751921 NCBI chr 3:91,252,829...91,271,607
Ensembl chr 3:91,252,829...91,271,607
JBrowse link
G Trim6 tripartite motif containing 6 ISO (PMID:24882218) RGD PMID:24882218 NCBI chr 1:169,410,084...169,423,305
Ensembl chr 1:169,410,115...169,423,283
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:12270142) RGD PMID:12270142 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
regulation of cohesin loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdca5 cell division cycle associated 5 ISO
IBA
(PMID:17349791)
PMID:21873635
RGD PMID:17349791, PMID:21873635 RGD:13792537 NCBI chr 1:221,448,661...221,462,235
Ensembl chr 1:221,448,661...221,462,233
JBrowse link
G Hdac8 histone deacetylase 8 ISO
ISS
(PMID:22885700)
GO_REF:0000024
RGD
UniProt
PMID:22885700 GO_REF:0000024 NCBI chr  X:72,163,777...72,370,058
Ensembl chr  X:72,163,777...72,370,044
JBrowse link
G Rb1 RB transcriptional corepressor 1 ISO
IEA
(PMID:20551165)
GO_REF:0000107
RGD
Ensembl
PMID:20551165 GO_REF:0000107 NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342
JBrowse link
G Wapl WAPL cohesin release factor ISO
IBA
MGI:MGI:5551791|MGI:MGI:5551807 (MGI:MGI:5544860|PMID:23975099)
PMID:21873635
(PMID:17113138)
RGD PMID:17113138, PMID:23975099, PMID:21873635 MGI:MGI:5544860, RGD:13792537 NCBI chr16:11,029,325...11,108,867
Ensembl chr16:11,032,531...11,106,589
JBrowse link
regulation of core promoter binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISO (MGI:MGI:5428344|PMID:22723415) RGD PMID:22723415 MGI:MGI:5428344 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
regulation of DNA replication origin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 ISO (PMID:21856198) RGD PMID:21856198 NCBI chr19:55,381,565...55,386,511
Ensembl chr19:55,381,565...55,386,511
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 IEA
ISO
GO_REF:0000107
(PMID:21856198)
Ensembl
RGD
PMID:21856198 GO_REF:0000107 NCBI chr16:9,620,854...9,709,342
Ensembl chr16:9,625,177...9,709,347
JBrowse link
regulation of RNA polymerase II regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lif LIF, interleukin 6 family cytokine ISO
IEA
(MGI:MGI:5317256|PMID:21385842)
GO_REF:0000107
RGD
Ensembl
PMID:21385842 GO_REF:0000107, MGI:MGI:5317256 NCBI chr14:84,482,652...84,500,574
Ensembl chr14:84,482,674...84,500,642
JBrowse link
G Nsd1 nuclear receptor binding SET domain protein 1 ISO (PMID:20837538) RGD PMID:20837538 NCBI chr17:9,840,859...9,955,391
Ensembl chr17:9,844,133...9,952,898
JBrowse link
G Zbtb7c zinc finger and BTB domain containing 7C ISO (MGI:MGI:5426758|PMID:22331133) RGD PMID:22331133 MGI:MGI:5426758 NCBI chr18:72,124,955...72,462,293
Ensembl chr18:72,005,581...72,462,292
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 ISO MGI:MGI:2180033 (MGI:MGI:3583382|PMID:15980864) RGD PMID:15980864 MGI:MGI:3583382 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
regulation of transcription regulatory region DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dot1l DOT1 like histone lysine methyltransferase ISO
IBA
(PMID:22002246)
PMID:21873635
RGD PMID:22002246, PMID:21873635 RGD:13792537 NCBI chr 7:11,786,105...11,824,742
Ensembl chr 7:11,786,105...11,824,742
JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7a ISS
ISO
IEA
GO_REF:0000024
(PMID:12004059)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:12004059 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:11,429,266...11,446,119
Ensembl chr 7:11,432,049...11,444,786
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    biological regulation 13767
      regulation of molecular function 3065
        regulation of binding 408
          regulation of DNA binding 132
            negative regulation of DNA binding + 55
            positive regulation of DNA binding + 66
            regulation of DNA replication origin binding + 2
            regulation of G-quadruplex DNA binding + 0
            regulation of cohesin loading + 5
            regulation of cohesin unloading + 0
            regulation of recombination hotspot binding + 0
            regulation of telomeric DNA binding + 4
            regulation of transcription regulatory region DNA binding + 54
            regulation of triplex DNA binding + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.