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ONTOLOGY REPORT - ANNOTATIONS


Term:cartilage development
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Accession:GO:0051216 term browser browse the term
Definition:The process whose specific outcome is the progression of a cartilage element over time, from its formation to the mature structure. Cartilage elements are skeletal elements that consist of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
Synonyms:exact_synonym: cartilage biogenesis;   cartilage biosynthesis;   cartilage element development;   cartilage formation;   cartilage organ development;   chondrogenesis
 xref: Wikipedia:Chondrogenesis


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cartilage development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp7a ATPase copper transporting alpha JBrowse link NW_004936683 2,874,022 2,936,214 RGD:9068941
G Bbs1 Bardet-Biedl syndrome 1 JBrowse link NW_004936599 3,059,274 3,076,853 RGD:9068941
G Bbs2 Bardet-Biedl syndrome 2 JBrowse link NW_004936475 8,785,914 8,810,490 RGD:9068941
G Bmpr1a bone morphogenetic protein receptor type 1A JBrowse link NW_004936804 52,435 115,289 RGD:9068941
G Cd44 CD44 molecule (Indian blood group) JBrowse link NW_004936533 2,949,026 3,033,166 RGD:9068941
G Chst11 carbohydrate sulfotransferase 11 JBrowse link NW_004936492 9,886,269 10,092,725 RGD:9068941
G Chsy1 chondroitin sulfate synthase 1 JBrowse link NW_004936483 2,613,820 2,685,986 RGD:9068941
G Col10a1 collagen type X alpha 1 chain JBrowse link NW_004936824 734,499 741,674 RGD:9068941
G Col11a1 collagen type XI alpha 1 chain JBrowse link NW_004936730 466,912 680,823 RGD:9068941
G Col11a2 collagen type XI alpha 2 chain JBrowse link NW_004936476 25,663,563 25,692,315 RGD:9068941
G Col2a1 collagen type II alpha 1 chain JBrowse link NW_004936512 5,861,933 5,894,898 RGD:9068941
G Col9a1 collagen type IX alpha 1 chain JBrowse link NW_004936618 2,176,328 2,260,000 RGD:9068941
G Comp cartilage oligomeric matrix protein JBrowse link NW_004936596 2,544,389 2,551,155 RGD:9068941
G Creb3l2 cAMP responsive element binding protein 3 like 2 JBrowse link NW_004936592 2,302,921 2,413,486 RGD:9068941
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 JBrowse link NW_004936555 3,639,459 3,807,483 RGD:9068941
G Ddrgk1 DDRGK domain containing 1 JBrowse link NW_004936485 15,516,348 15,526,380 RGD:9068941
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004936846 528,768 584,599 RGD:9068941
G Dlx2 distal-less homeobox 2 JBrowse link NW_004936509 2,262,873 2,265,391 RGD:9068941
G Dspp dentin sialophosphoprotein JBrowse link NW_004936905 458,062 463,359 RGD:9068941
G Edn1 endothelin 1 JBrowse link NW_004936534 885,489 892,292 RGD:9068941
G Esrra estrogen related receptor alpha JBrowse link NW_004936599 4,898,534 4,922,758 RGD:9068941
G Evc EvC ciliary complex subunit 1 JBrowse link NW_004936477 17,940,792 17,992,996 RGD:9068941
G Fbxw4 F-box and WD repeat domain containing 4 JBrowse link NW_004936600 4,072,749 4,162,220 RGD:9068941
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link NW_004936477 21,591,772 21,606,289 RGD:9068941
G Gnas GNAS complex locus JBrowse link NW_004936530 1,353,432 1,407,437 RGD:9068941
G Hes5 hes family bHLH transcription factor 5 JBrowse link NW_004936737 1,045,496 1,047,865 RGD:9068941
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link NW_004936495 5,770,988 5,816,157 RGD:9068941
G Hoxa3 homeobox A3 JBrowse link NW_004936478 3,735,509 3,767,899 RGD:9068941
G Hoxb3 homeobox B3 JBrowse link NW_004936490 12,834,240 12,836,812 RGD:9068941
G Hoxc4 homeobox C4 JBrowse link NW_004936512 11,238,905 11,277,531 RGD:9068941
G Hoxd3 homeobox D3 JBrowse link NW_004936509 5,654,737 5,659,937 RGD:9068941
G Hyal1 hyaluronidase 1 JBrowse link NW_004936529 1,838,212 1,842,399 RGD:9068941
G Hyal2 hyaluronidase 2 JBrowse link NW_004936529 1,845,445 1,851,106 RGD:9068941
G Hyal3 hyaluronidase 3 JBrowse link NW_004936529 1,831,639 1,837,314 RGD:9068941
G Ihh Indian hedgehog signaling molecule JBrowse link NW_004936569 1,474,693 1,480,562 RGD:9068941
G Il17f interleukin 17F JBrowse link NW_004936476 8,579,282 8,580,916 RGD:9068941
G Itgb8 integrin subunit beta 8 JBrowse link NW_004936546 6,352,186 6,447,458 RGD:9068941
G Lum lumican JBrowse link NW_004936507 7,847,761 7,855,311 RGD:9068941
G Mapk3 mitogen-activated protein kinase 3 JBrowse link NW_004936501 12,342,670 12,390,650 RGD:9068941
G Matn3 matrilin 3 JBrowse link NW_004936493 11,352,206 11,371,596 RGD:9068941
G Mkks McKusick-Kaufman syndrome JBrowse link NW_004936485 9,089,118 9,114,396 RGD:9068941
G Mmp13 matrix metallopeptidase 13 JBrowse link NW_004936551 5,040,084 5,050,384 RGD:9068941
G Msx1 msh homeobox 1 JBrowse link NW_004936477 17,406,551 17,413,615 RGD:9068941
G Msx2 msh homeobox 2 JBrowse link NW_004936609 1,216,436 1,221,528 RGD:9068941
G Pax7 paired box 7 JBrowse link NW_004936474 5,045,284 5,131,859 RGD:9068941
G Pitx1 paired like homeodomain 1 JBrowse link NW_004936597 2,211,087 2,217,065 RGD:9068941
G Pkd1 polycystin 1, transient receptor potential channel interacting JBrowse link NW_004936694 1,923,383 1,958,160 RGD:9068941
G Prrx1 paired related homeobox 1 JBrowse link NW_004936481 16,208,243 16,272,836 RGD:9068941
G Satb2 SATB homeobox 2 JBrowse link NW_004936506 34,968 206,432 RGD:9068941
G Sfrp2 secreted frizzled related protein 2 JBrowse link NW_004936576 604,174 612,440 RGD:9068941
G Smad1 SMAD family member 1 JBrowse link NW_004936535 3,582,512 3,626,312 RGD:9068941
G Smad5 SMAD family member 5 JBrowse link NW_004936597 3,225,374 3,264,604 RGD:9068941
G Smad9 SMAD family member 9 JBrowse link NW_004936472 30,980,850 31,050,138 RGD:9068941
G Smpd3 sphingomyelin phosphodiesterase 3 JBrowse link NW_004936475 18,667,563 18,755,132 RGD:9068941
G Snorc secondary ossification center associated regulator of chondrocyte maturation JBrowse link NW_004936525 4,284,176 4,290,384 RGD:9068941
G Sox5 SRY-box transcription factor 5 JBrowse link NW_004936548 3,213,305 3,599,876 RGD:9068941
G Sox6 SRY-box transcription factor 6 JBrowse link NW_004936528 2,331,706 2,912,423 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
G Sulf1 sulfatase 1 JBrowse link NW_004936496 4,755,806 4,931,964 RGD:9068941
G Sulf2 sulfatase 2 JBrowse link NW_004936514 5,819,375 5,899,324 RGD:9068941
G Tgfbr2 transforming growth factor beta receptor 2 JBrowse link NW_004936473 21,324,669 21,409,430 RGD:9068941
G Timp1 TIMP metallopeptidase inhibitor 1 JBrowse link NW_004936502 13,345,936 13,350,170 RGD:9068941
G Trip11 thyroid hormone receptor interactor 11 JBrowse link NW_004936733 233,723 300,150 RGD:9068941
G Tyms thymidylate synthetase JBrowse link NW_004936550 33,797 42,233 RGD:9068941
G Wnt7a Wnt family member 7A JBrowse link NW_004936898 45,903 70,313 RGD:9068941
G Zbtb16 zinc finger and BTB domain containing 16 JBrowse link NW_004936612 389,877 570,595 RGD:9068941
G Zeb1 zinc finger E-box binding homeobox 1 JBrowse link NW_004936574 17,643 175,762 RGD:9068941
bronchus cartilage development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
G Srf serum response factor JBrowse link NW_004936476 16,779,941 16,789,499 RGD:9068941
cartilage condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acan aggrecan JBrowse link NW_004936483 14,811,152 14,846,305 RGD:9068941
G Barx2 BARX homeobox 2 JBrowse link NW_004936572 2,846,862 2,916,842 RGD:9068941
G Bmpr1b bone morphogenetic protein receptor type 1B JBrowse link NW_004936687 2,346,601 2,595,283 RGD:9068941
G Ccn2 cellular communication network factor 2 JBrowse link NW_004936560 42,561 45,748 RGD:9068941
G Chad chondroadherin JBrowse link NW_004936490 11,240,487 11,244,422 RGD:9068941
G Col11a1 collagen type XI alpha 1 chain JBrowse link NW_004936730 466,912 680,823 RGD:9068941
G Col2a1 collagen type II alpha 1 chain JBrowse link NW_004936512 5,861,933 5,894,898 RGD:9068941
G Fgf4 fibroblast growth factor 4 JBrowse link NW_004936599 894,091 895,676 RGD:9068941
G Fgf6 fibroblast growth factor 6 JBrowse link NW_004936606 4,613,052 4,624,587 RGD:9068941
G Mapk14 mitogen-activated protein kinase 14 JBrowse link NW_004936476 23,237,762 23,310,211 RGD:9068941
G Mycn MYCN proto-oncogene, bHLH transcription factor JBrowse link NW_004936493 14,618,176 14,624,201 RGD:9068941
G Myf5 myogenic factor 5 JBrowse link NW_004936698 1,609,227 1,611,283 RGD:9068941
G Otor otoraplin JBrowse link NW_004936485 3,285,363 3,288,914 RGD:9068941
G Pkd1 polycystin 1, transient receptor potential channel interacting JBrowse link NW_004936694 1,923,383 1,958,160 RGD:9068941
G Ror2 receptor tyrosine kinase like orphan receptor 2 JBrowse link NW_004936796 630,307 675,157 RGD:9068941
G Sox5 SRY-box transcription factor 5 JBrowse link NW_004936548 3,213,305 3,599,876 RGD:9068941
G Sox6 SRY-box transcription factor 6 JBrowse link NW_004936528 2,331,706 2,912,423 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
G Tgfb2 transforming growth factor beta 2 JBrowse link NW_004936628 310,720 394,002 RGD:9068941
G Thra thyroid hormone receptor alpha JBrowse link NW_004936490 15,188,341 15,206,032 RGD:9068941
G Wnt7a Wnt family member 7A JBrowse link NW_004936898 45,903 70,313 RGD:9068941
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta-synthase JBrowse link NW_004936500 976,043 1,003,559 RGD:9068941
G Col1a1 collagen type I alpha 1 chain JBrowse link NW_004936490 11,448,552 11,465,836 RGD:9068941
G Col2a1 collagen type II alpha 1 chain JBrowse link NW_004936512 5,861,933 5,894,898 RGD:9068941
G Ghr growth hormone receptor JBrowse link NW_004936518 235,996 380,225 RGD:9068941
G Hoxa11 homeobox A11 JBrowse link NW_004936478 3,809,288 3,813,014 RGD:9068941
G Hspg2 heparan sulfate proteoglycan 2 JBrowse link NW_004936474 7,407,622 7,478,950 RGD:9068941
G Shox2 short stature homeobox 2 JBrowse link NW_004936519 4,810,777 4,818,733 RGD:9068941
G Sik3 SIK family kinase 3 JBrowse link NW_004936542 2,119,423 2,357,533 RGD:9068941
G Trpv4 transient receptor potential cation channel subfamily V member 4 JBrowse link NW_004936769 1,424,526 1,447,547 RGD:9068941
cartilage morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hand1 heart and neural crest derivatives expressed 1 JBrowse link NW_004936515 8,289,764 8,292,937 RGD:9068941
G Hand2 heart and neural crest derivatives expressed 2 JBrowse link NW_004936516 4,692,926 4,695,625 RGD:9068941
G Hoxa5 homeobox A5 JBrowse link NW_004936478 3,768,757 3,771,850 RGD:9068941
G Mef2c myocyte enhancer factor 2C JBrowse link NW_004936469 7,060,480 7,225,497 RGD:9068941
G Msx1 msh homeobox 1 JBrowse link NW_004936477 17,406,551 17,413,615 RGD:9068941
G Snai1 snail family transcriptional repressor 1 JBrowse link NW_004936514 4,456,498 4,462,436 RGD:9068941
G Snai2 snail family transcriptional repressor 2 JBrowse link NW_004936590 3,813,916 3,817,642 RGD:9068941
chondroblast differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acan aggrecan JBrowse link NW_004936483 14,811,152 14,846,305 RGD:9068941
G Ccn1 cellular communication network factor 1 JBrowse link NW_004936608 152,174 155,123 RGD:9068941
G Fgf2 fibroblast growth factor 2 JBrowse link NW_004936662 1,886,176 1,928,998 RGD:9068941
G Fgf4 fibroblast growth factor 4 JBrowse link NW_004936599 894,091 895,676 RGD:9068941
G Gdf5 growth differentiation factor 5 JBrowse link NW_004936561 5,343,038 5,347,721 RGD:9068941
G Rara retinoic acid receptor alpha JBrowse link NW_004936490 15,376,217 15,420,638 RGD:9068941
chondrocyte development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acan aggrecan JBrowse link NW_004936483 14,811,152 14,846,305 RGD:9068941
G Bmpr2 bone morphogenetic protein receptor type 2 JBrowse link NW_004936726 1,543,263 1,711,422 RGD:9068941
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 JBrowse link NW_004936496 3,498,534 3,521,939 RGD:9068941
G Chst11 carbohydrate sulfotransferase 11 JBrowse link NW_004936492 9,886,269 10,092,725 RGD:9068941
G Chsy1 chondroitin sulfate synthase 1 JBrowse link NW_004936483 2,613,820 2,685,986 RGD:9068941
G Col11a1 collagen type XI alpha 1 chain JBrowse link NW_004936730 466,912 680,823 RGD:9068941
G Comp cartilage oligomeric matrix protein JBrowse link NW_004936596 2,544,389 2,551,155 RGD:9068941
G Ecm1 extracellular matrix protein 1 JBrowse link NW_004936580 750,423 756,765 RGD:9068941
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 JBrowse link NW_004936712 413,602 454,443 RGD:9068941
G Fgf18 fibroblast growth factor 18 JBrowse link NW_004936609 3,677,661 3,706,511 RGD:9068941
G Msx2 msh homeobox 2 JBrowse link NW_004936609 1,216,436 1,221,528 RGD:9068941
G Rarg retinoic acid receptor gamma JBrowse link NW_004936512 10,502,954 10,524,796 RGD:9068941
G Runx2 RUNX family transcription factor 2 JBrowse link NW_004936476 14,695,965 14,818,246 RGD:9068941
G Sfrp2 secreted frizzled related protein 2 JBrowse link NW_004936576 604,174 612,440 RGD:9068941
G Shox2 short stature homeobox 2 JBrowse link NW_004936519 4,810,777 4,818,733 RGD:9068941
G Smpd3 sphingomyelin phosphodiesterase 3 JBrowse link NW_004936475 18,667,563 18,755,132 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
G Sulf1 sulfatase 1 JBrowse link NW_004936496 4,755,806 4,931,964 RGD:9068941
G Sulf2 sulfatase 2 JBrowse link NW_004936514 5,819,375 5,899,324 RGD:9068941
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Serpinh1 serpin family H member 1 JBrowse link NW_004936498 4,341,944 4,351,432 RGD:9068941
G Smpd3 sphingomyelin phosphodiesterase 3 JBrowse link NW_004936475 18,667,563 18,755,132 RGD:9068941
chondrocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arid5a AT-rich interaction domain 5A JBrowse link NW_004936744 539,150 545,021 RGD:9068941
G Bmp2 bone morphogenetic protein 2 JBrowse link NW_004936485 12,428,765 12,439,570 RGD:9068941
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004936697 1,054,237 1,061,468 RGD:9068941
G Bmpr1a bone morphogenetic protein receptor type 1A JBrowse link NW_004936804 52,435 115,289 RGD:9068941
G Bmpr1b bone morphogenetic protein receptor type 1B JBrowse link NW_004936687 2,346,601 2,595,283 RGD:9068941
G Ccn3 cellular communication network factor 3 JBrowse link NW_004936470 27,178,439 27,185,554 RGD:9068941
G Col11a2 collagen type XI alpha 2 chain JBrowse link NW_004936476 25,663,563 25,692,315 RGD:9068941
G Col2a1 collagen type II alpha 1 chain JBrowse link NW_004936512 5,861,933 5,894,898 RGD:9068941
G Col9a1 collagen type IX alpha 1 chain JBrowse link NW_004936618 2,176,328 2,260,000 RGD:9068941
G Creb3l2 cAMP responsive element binding protein 3 like 2 JBrowse link NW_004936592 2,302,921 2,413,486 RGD:9068941
G Cytl1 cytokine like 1 JBrowse link NW_004936477 17,508,833 17,512,608 RGD:9068941
G Ext1 exostosin glycosyltransferase 1 JBrowse link NW_004936470 28,303,213 28,566,470 RGD:9068941
G Fgf9 fibroblast growth factor 9 JBrowse link NW_004936720 282,291 316,629 RGD:9068941
G Fgfr1 fibroblast growth factor receptor 1 JBrowse link NW_004936710 1,760,365 1,815,269 RGD:9068941
G Gli2 GLI family zinc finger 2 JBrowse link NW_004936469 49,616,552 49,788,760 RGD:9068941
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 JBrowse link NW_004936671 780,173 827,628 RGD:9068941
G Hes5 hes family bHLH transcription factor 5 JBrowse link NW_004936737 1,045,496 1,047,865 RGD:9068941
G Hmga2 high mobility group AT-hook 2 JBrowse link NW_004936545 3,944,419 3,958,289 RGD:9068941
G Hspg2 heparan sulfate proteoglycan 2 JBrowse link NW_004936474 7,407,622 7,478,950 RGD:9068941
G Ift80 intraflagellar transport 80 JBrowse link NW_004936708 238,302 362,537 RGD:9068941
G Mapk14 mitogen-activated protein kinase 14 JBrowse link NW_004936476 23,237,762 23,310,211 RGD:9068941
G Matn1 matrilin 1 JBrowse link NW_004936474 14,085,240 14,093,364 RGD:9068941
G Mef2c myocyte enhancer factor 2C JBrowse link NW_004936469 7,060,480 7,225,497 RGD:9068941
G Mef2d myocyte enhancer factor 2D JBrowse link NW_004936580 5,660,306 5,685,333 RGD:9068941
G Nfib nuclear factor I B JBrowse link NW_004936539 7,763,036 8,185,001 RGD:9068941
G Osr1 odd-skipped related transcription factor 1 JBrowse link NW_004936493 11,888,024 11,895,058 RGD:9068941
G Osr2 odd-skipped related transciption factor 2 JBrowse link NW_004936470 44,024,497 44,032,429 RGD:9068941
G Prkca protein kinase C alpha JBrowse link NW_004936541 6,231,604 6,488,201 RGD:9068941
G Pth1r parathyroid hormone 1 receptor JBrowse link NW_004936596 674,088 693,191 RGD:9068941
G Runx2 RUNX family transcription factor 2 JBrowse link NW_004936476 14,695,965 14,818,246 RGD:9068941
G Runx3 RUNX family transcription factor 3 JBrowse link NW_004936474 9,751,946 9,802,910 RGD:9068941
G Scx scleraxis bHLH transcription factor JBrowse link NW_004936470 7,966,096 7,972,379 RGD:9068941
G Shox2 short stature homeobox 2 JBrowse link NW_004936519 4,810,777 4,818,733 RGD:9068941
G Six2 SIX homeobox 2 JBrowse link NW_004936508 7,047,563 7,051,129 RGD:9068941
G Slc39a14 solute carrier family 39 member 14 JBrowse link NW_004939045 1 7,491 RGD:9068941
G Snx19 sorting nexin 19 JBrowse link NW_004936572 1,529,329 1,567,991 RGD:9068941
G Sox5 SRY-box transcription factor 5 JBrowse link NW_004936548 3,213,305 3,599,876 RGD:9068941
G Sox6 SRY-box transcription factor 6 JBrowse link NW_004936528 2,331,706 2,912,423 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
G Tgfb1 transforming growth factor beta 1 JBrowse link NW_004936661 3,742,080 3,758,266 RGD:9068941
G Tgfbi transforming growth factor beta induced JBrowse link NW_004936597 3,128,007 3,161,885 RGD:9068941
G Trps1 transcriptional repressor GATA binding 1 JBrowse link NW_004936470 30,475,779 30,666,546 RGD:9068941
G Wnt10b Wnt family member 10B JBrowse link NW_004936512 6,768,240 6,774,172 RGD:9068941
G Wnt2b Wnt family member 2B JBrowse link NW_004936690 1,077,538 1,094,005 RGD:9068941
G Wnt5b Wnt family member 5B JBrowse link NW_004936606 1,741,500 1,854,857 RGD:9068941
G Wnt7a Wnt family member 7A JBrowse link NW_004936898 45,903 70,313 RGD:9068941
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Axin2 axin 2 JBrowse link NW_004936541 7,155,963 7,242,466 RGD:9068941
G Ihh Indian hedgehog signaling molecule JBrowse link NW_004936569 1,474,693 1,480,562 RGD:9068941
G Scube2 signal peptide, CUB domain and EGF like domain containing 2 JBrowse link NW_004936528 8,981,079 9,060,033 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
G Trip11 thyroid hormone receptor interactor 11 JBrowse link NW_004936733 233,723 300,150 RGD:9068941
chondrocyte hypertrophy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mex3c mex-3 RNA binding family member C JBrowse link NW_004936497 12,178,350 12,201,795 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
growth plate cartilage axis specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Stc1 stanniocalcin 1 JBrowse link NW_004936555 7,240,649 7,251,668 RGD:9068941
growth plate cartilage chondrocyte development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col27a1 collagen type XXVII alpha 1 chain JBrowse link NW_004936487 3,487,776 3,601,779 RGD:9068941
G Poc1a POC1 centriolar protein A JBrowse link NW_004936529 3,423,588 3,495,698 RGD:9068941
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nppc natriuretic peptide C JBrowse link NW_004936525 5,092,675 5,099,344 RGD:9068941
growth plate cartilage chondrocyte growth term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rarg retinoic acid receptor gamma JBrowse link NW_004936512 10,502,954 10,524,796 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
G Tgfbr2 transforming growth factor beta receptor 2 JBrowse link NW_004936473 21,324,669 21,409,430 RGD:9068941
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Matn1 matrilin 1 JBrowse link NW_004936474 14,085,240 14,093,364 RGD:9068941
growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cer1 cerberus 1, DAN family BMP antagonist JBrowse link NW_004936539 8,321,432 8,323,909 RGD:9068941
G Nppc natriuretic peptide C JBrowse link NW_004936525 5,092,675 5,099,344 RGD:9068941
growth plate cartilage development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col2a1 collagen type II alpha 1 chain JBrowse link NW_004936512 5,861,933 5,894,898 RGD:9068941
G Col9a1 collagen type IX alpha 1 chain JBrowse link NW_004936618 2,176,328 2,260,000 RGD:9068941
G Comp cartilage oligomeric matrix protein JBrowse link NW_004936596 2,544,389 2,551,155 RGD:9068941
G Mmp13 matrix metallopeptidase 13 JBrowse link NW_004936551 5,040,084 5,050,384 RGD:9068941
G Rara retinoic acid receptor alpha JBrowse link NW_004936490 15,376,217 15,420,638 RGD:9068941
G Rarb retinoic acid receptor beta JBrowse link NW_004936473 16,983,829 17,146,517 RGD:9068941
G Rarg retinoic acid receptor gamma JBrowse link NW_004936512 10,502,954 10,524,796 RGD:9068941
G Tgfbr2 transforming growth factor beta receptor 2 JBrowse link NW_004936473 21,324,669 21,409,430 RGD:9068941
G Thbs1 thrombospondin 1 JBrowse link NW_004936471 3,064,466 3,081,125 RGD:9068941
G Thbs3 thrombospondin 3 JBrowse link NW_004936580 4,699,255 4,709,200 RGD:9068941
G Zmpste24 zinc metallopeptidase STE24 JBrowse link NW_004936474 22,035,059 22,077,846 RGD:9068941
mandibular condyle articular cartilage development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dspp dentin sialophosphoprotein JBrowse link NW_004936905 458,062 463,359 RGD:9068941
negative regulation of cartilage development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctsk cathepsin K JBrowse link NW_004936580 1,022,762 1,038,020 RGD:9068941
G Frzb frizzled related protein JBrowse link NW_004936509 11,440,414 11,471,042 RGD:9068941
G Idua alpha-L-iduronidase JBrowse link NW_004936477 22,200,471 22,215,473 RGD:9068941
G Lep leptin JBrowse link NW_004936479 15,394,966 15,411,334 RGD:9068941
G Nog noggin JBrowse link NW_004936490 6,262,651 6,264,069 RGD:9068941
G Rara retinoic acid receptor alpha JBrowse link NW_004936490 15,376,217 15,420,638 RGD:9068941
G Rarb retinoic acid receptor beta JBrowse link NW_004936473 16,983,829 17,146,517 RGD:9068941
G Rarg retinoic acid receptor gamma JBrowse link NW_004936512 10,502,954 10,524,796 RGD:9068941
G Tgfb2 transforming growth factor beta 2 JBrowse link NW_004936628 310,720 394,002 RGD:9068941
G Wnt9a Wnt family member 9A JBrowse link NW_004936864 216,381 245,885 RGD:9068941
negative regulation of chondrocyte development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pthlh parathyroid hormone like hormone JBrowse link NW_004936760 197,525 209,212 RGD:9068941
G Rflnb refilin B JBrowse link NW_004936538 7,226,570 7,233,203 RGD:9068941
negative regulation of chondrocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif 12 JBrowse link NW_004936518 7,180,262 7,483,416 RGD:9068941
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif 7 JBrowse link NW_004936471 36,978,555 37,025,733 RGD:9068941
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004936697 1,054,237 1,061,468 RGD:9068941
G Ccn4 cellular communication network factor 4 JBrowse link NW_004936470 16,110,492 16,134,065 RGD:9068941
G Chadl chondroadherin like JBrowse link NW_004936492 633,443 643,550 RGD:9068941
G Ctnnb1 catenin beta 1 JBrowse link NW_004936473 29,999,542 30,034,610 RGD:9068941
G Efemp1 EGF containing fibulin extracellular matrix protein 1 JBrowse link NW_004936491 2,159,654 2,214,480 RGD:9068941
G Gdf5 growth differentiation factor 5 JBrowse link NW_004936561 5,343,038 5,347,721 RGD:9068941
G Gli2 GLI family zinc finger 2 JBrowse link NW_004936469 49,616,552 49,788,760 RGD:9068941
G Grem1 gremlin 1, DAN family BMP antagonist JBrowse link NW_004936673 1,394,743 1,399,726 RGD:9068941
G Ltbp3 latent transforming growth factor beta binding protein 3 JBrowse link NW_004936599 3,902,903 3,918,471 RGD:9068941
G Nkx3-2 NK3 homeobox 2 JBrowse link NW_004936477 13,999,045 14,001,659 RGD:9068941
G Pth parathyroid hormone JBrowse link NW_004936528 5,081,569 5,084,030 RGD:9068941
G Pthlh parathyroid hormone like hormone JBrowse link NW_004936760 197,525 209,212 RGD:9068941
G Ptpn11 protein tyrosine phosphatase non-receptor type 11 JBrowse link NW_004936668 2,602,261 2,687,903 RGD:9068941
G Rarb retinoic acid receptor beta JBrowse link NW_004936473 16,983,829 17,146,517 RGD:9068941
G Rarg retinoic acid receptor gamma JBrowse link NW_004936512 10,502,954 10,524,796 RGD:9068941
G Snai2 snail family transcriptional repressor 2 JBrowse link NW_004936590 3,813,916 3,817,642 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
G Tgfbr1 transforming growth factor beta receptor 1 JBrowse link NW_004936524 7,656,523 7,680,043 RGD:9068941
G Wnt9a Wnt family member 9A JBrowse link NW_004936864 216,381 245,885 RGD:9068941
negative regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dspp dentin sialophosphoprotein JBrowse link NW_004936905 458,062 463,359 RGD:9068941
positive regulation of cartilage development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp1 bone morphogenetic protein 1 JBrowse link NW_004936555 5,990,822 6,023,864 RGD:9068941
G Bmp10 bone morphogenetic protein 10 JBrowse link NW_004936491 13,180,086 13,186,004 RGD:9068941
G Bmp2 bone morphogenetic protein 2 JBrowse link NW_004936485 12,428,765 12,439,570 RGD:9068941
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004936697 1,054,237 1,061,468 RGD:9068941
G Ccn1 cellular communication network factor 1 JBrowse link NW_004936608 152,174 155,123 RGD:9068941
G Gdf2 growth differentiation factor 2 JBrowse link NW_004936554 7,307,461 7,322,048 RGD:9068941
G Mdk midkine JBrowse link NW_004936562 2,687,825 2,690,292 RGD:9068941
G Scx scleraxis bHLH transcription factor JBrowse link NW_004936470 7,966,096 7,972,379 RGD:9068941
G Smad1 SMAD family member 1 JBrowse link NW_004936535 3,582,512 3,626,312 RGD:9068941
G Sox5 SRY-box transcription factor 5 JBrowse link NW_004936548 3,213,305 3,599,876 RGD:9068941
G Sox6 SRY-box transcription factor 6 JBrowse link NW_004936528 2,331,706 2,912,423 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
G Wnt5a Wnt family member 5A JBrowse link NW_004936473 6,031,627 6,052,211 RGD:9068941
G Zbtb16 zinc finger and BTB domain containing 16 JBrowse link NW_004936612 389,877 570,595 RGD:9068941
positive regulation of chondrocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp6 bone morphogenetic protein 6 JBrowse link NW_004936534 4,707,658 4,871,865 RGD:9068941
G Fgf18 fibroblast growth factor 18 JBrowse link NW_004936609 3,677,661 3,706,511 RGD:9068941
G Gdf5 growth differentiation factor 5 JBrowse link NW_004936561 5,343,038 5,347,721 RGD:9068941
G Gdf6 growth differentiation factor 6 JBrowse link NW_004936470 46,361,528 46,379,576 RGD:9068941
G Gli3 GLI family zinc finger 3 JBrowse link NW_004936478 17,129,922 17,403,630 RGD:9068941
G Hoxa11 homeobox A11 JBrowse link NW_004936478 3,809,288 3,813,014 RGD:9068941
G LOC101965545 NADPH--cytochrome P450 reductase JBrowse link NW_004936543 2,275,981 2,327,931 RGD:9068941
G Loxl2 lysyl oxidase like 2 JBrowse link NW_004936555 6,781,563 6,865,662 RGD:9068941
G Mustn1 musculoskeletal, embryonic nuclear protein 1 JBrowse link NW_004936473 3,592,259 3,594,717 RGD:9068941
G Pkdcc protein kinase domain containing, cytoplasmic JBrowse link NW_004936508 9,550,201 9,559,493 RGD:9068941
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link NW_004936599 3,800,142 3,810,583 RGD:9068941
G Runx2 RUNX family transcription factor 2 JBrowse link NW_004936476 14,695,965 14,818,246 RGD:9068941
G Smad3 SMAD family member 3 JBrowse link NW_004936471 27,080,662 27,185,861 RGD:9068941
G Sox5 SRY-box transcription factor 5 JBrowse link NW_004936548 3,213,305 3,599,876 RGD:9068941
G Sox6 SRY-box transcription factor 6 JBrowse link NW_004936528 2,331,706 2,912,423 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
G Thrb thyroid hormone receptor beta JBrowse link NW_004936473 15,766,214 15,986,389 RGD:9068941
G Zbtb16 zinc finger and BTB domain containing 16 JBrowse link NW_004936612 389,877 570,595 RGD:9068941
G Znf219 zinc finger protein 219 JBrowse link NW_004936880 293,874 308,160 RGD:9068941
positive regulation of chondrocyte hypertrophy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smad7 SMAD family member 7 JBrowse link NW_004936497 13,894,586 13,921,978 RGD:9068941
regulation of cartilage development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004936697 1,054,237 1,061,468 RGD:9068941
G Kat2a lysine acetyltransferase 2A JBrowse link NW_004936490 16,952,698 16,960,424 RGD:9068941
G Scx scleraxis bHLH transcription factor JBrowse link NW_004936470 7,966,096 7,972,379 RGD:9068941
G Smpd3 sphingomyelin phosphodiesterase 3 JBrowse link NW_004936475 18,667,563 18,755,132 RGD:9068941
G Tgfb1 transforming growth factor beta 1 JBrowse link NW_004936661 3,742,080 3,758,266 RGD:9068941
regulation of chondrocyte development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Axin2 axin 2 JBrowse link NW_004936541 7,155,963 7,242,466 RGD:9068941
regulation of chondrocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccn2 cellular communication network factor 2 JBrowse link NW_004936560 42,561 45,748 RGD:9068941
G Glg1 golgi glycoprotein 1 JBrowse link NW_004936475 23,411,194 23,534,692 RGD:9068941
G Hoxa11 homeobox A11 JBrowse link NW_004936478 3,809,288 3,813,014 RGD:9068941
G Lnpk lunapark, ER junction formation factor JBrowse link NW_004936509 5,426,759 5,493,574 RGD:9068941
G Mdk midkine JBrowse link NW_004936562 2,687,825 2,690,292 RGD:9068941
G Shox2 short stature homeobox 2 JBrowse link NW_004936519 4,810,777 4,818,733 RGD:9068941
G Six2 SIX homeobox 2 JBrowse link NW_004936508 7,047,563 7,051,129 RGD:9068941
G Trps1 transcriptional repressor GATA binding 1 JBrowse link NW_004936470 30,475,779 30,666,546 RGD:9068941
regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Carm1 coactivator associated arginine methyltransferase 1 JBrowse link NW_004936659 1,071,883 1,120,917 RGD:9068941
G LOC101965545 NADPH--cytochrome P450 reductase JBrowse link NW_004936543 2,275,981 2,327,931 RGD:9068941
trachea cartilage development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rara retinoic acid receptor alpha JBrowse link NW_004936490 15,376,217 15,420,638 RGD:9068941
G Rarg retinoic acid receptor gamma JBrowse link NW_004936512 10,502,954 10,524,796 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
G Srf serum response factor JBrowse link NW_004936476 16,779,941 16,789,499 RGD:9068941
trachea cartilage morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa5 homeobox A5 JBrowse link NW_004936478 3,768,757 3,771,850 RGD:9068941
G Lrp6 LDL receptor related protein 6 JBrowse link NW_004936587 5,065,200 5,143,029 RGD:9068941
G Rspo2 R-spondin 2 JBrowse link NW_004936470 36,680,716 36,815,347 RGD:9068941
G Wnt7b Wnt family member 7B JBrowse link NW_004936629 3,869,976 3,907,932 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11930
    developmental process 5577
      anatomical structure development 5219
        animal organ development 3486
          cartilage development 194
            articular cartilage development + 1
            bronchus cartilage development + 2
            cartilage condensation + 21
            cartilage development involved in endochondral bone morphogenesis + 35
            cartilage morphogenesis + 12
            chondroblast differentiation 6
            chondrocyte differentiation + 108
            negative regulation of cartilage development + 30
            positive regulation of cartilage development + 30
            regulation of cartilage development + 68
            trachea cartilage development + 8
Path 2
Term Annotations click to browse term
  biological_process 11930
    developmental process 5577
      anatomical structure development 5219
        multicellular organism development 4787
          system development 4532
            skeletal system development 500
              cartilage development 194
                articular cartilage development + 1
                bronchus cartilage development + 2
                cartilage condensation + 21
                cartilage development involved in endochondral bone morphogenesis + 35
                cartilage morphogenesis + 12
                chondroblast differentiation 6
                chondrocyte differentiation + 108
                negative regulation of cartilage development + 30
                positive regulation of cartilage development + 30
                regulation of cartilage development + 68
                trachea cartilage development + 8
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.