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ONTOLOGY REPORT - ANNOTATIONS


Term:histone H3-K4 methylation
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Accession:GO:0051568 term browser browse the term
Definition:The modification of histone H3 by addition of one or more methyl groups to lysine at position 4 of the histone.
Synonyms:exact_synonym: histone H3K4me;   histone lysine H3 K4 methylation


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histone H3-K4 methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ash1l ASH1 like histone lysine methyltransferase ISO (MGI:MGI:5562489|PMID:24012418) RGD PMID:24012418 MGI:MGI:5562489 NCBI chr 2:188,252,592...188,389,251
Ensembl chr 2:188,253,220...188,389,250
JBrowse link
G Ash2l ASH2 like histone lysine methyltransferase complex subunit ISO
IBA
(PMID:17355966), (PMID:19556245)
PMID:21873635
RGD PMID:17355966, PMID:19556245, PMID:21873635 RGD:13792537 NCBI chr16:71,011,315...71,033,171
Ensembl chr16:71,011,332...71,032,790
JBrowse link
G Cxxc1 CXXC finger protein 1 ISO (PMID:17355966) RGD PMID:17355966 NCBI chr18:70,192,520...70,197,871
Ensembl chr18:70,192,493...70,197,867
JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:19556245)
Ensembl
UniProt
RGD
PMID:19556245, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 6:22,296,128...22,316,894
Ensembl chr 6:22,296,128...22,316,894
JBrowse link
G Dydc1 DPY30 domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,648,030...18,667,962
Ensembl chr16:18,648,866...18,667,968
JBrowse link
G Dydc2 DPY30 domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,635,235...18,649,074
Ensembl chr16:18,635,388...18,645,941
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO
IBA
(PMID:15960975), (PMID:19556245)
(MGI:MGI:2446369|PMID:12453418)
PMID:21873635
RGD PMID:12453418, PMID:15960975, PMID:19556245, PMID:21873635 MGI:MGI:2446369, RGD:13792537 NCBI chr 8:49,110,407...49,185,872
Ensembl chr 8:49,114,990...49,158,971
JBrowse link
G Kmt2b lysine methyltransferase 2B ISO
IBA
(PMID:17166833)
PMID:21873635
RGD PMID:17166833, PMID:21873635 RGD:13792537 NCBI chr 1:89,022,889...89,042,176
Ensembl chr 1:89,023,200...89,042,176
JBrowse link
G Kmt2c lysine methyltransferase 2C IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:82,506...109,986
NCBI chr 4:6,083,650...6,294,413
Ensembl chr 4:6,083,736...6,292,516
JBrowse link
G Kmt2d lysine methyltransferase 2D ISO (MGI:MGI:4849597|PMID:20808952) RGD PMID:20808952 MGI:MGI:4849597 NCBI chr 7:140,507,137...140,542,479
Ensembl chr 7:140,489,492...140,546,908
JBrowse link
G LOC100910833 histone-lysine N-methyltransferase setd3-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:131,602,149...131,650,424
Ensembl chr 6:131,602,413...131,648,661
JBrowse link
G Nsd3 nuclear receptor binding SET domain protein 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:71,126,276...71,237,118
Ensembl chr16:71,130,668...71,237,118
JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:198,448,790...198,451,078
Ensembl chr 1:198,449,040...198,450,688
JBrowse link
G Paxip1 PAX interacting protein 1 ISO (PMID:17178841) RGD PMID:17178841 NCBI chr 4:3,956,931...4,008,326
Ensembl chr 4:3,959,640...4,008,326
JBrowse link
G Prdm9 PR/SET domain 9 ISO
ISS
(PMID:24095733)
GO_REF:0000024
RGD
UniProt
PMID:24095733 GO_REF:0000024 NCBI chr 1:57,533,602...57,555,155
Ensembl chr 1:57,533,577...57,555,048
JBrowse link
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit ISO (MGI:MGI:5529403|PMID:24051374)
(PMID:17355966), (PMID:19556245)
RGD PMID:17355966, PMID:19556245, PMID:24051374 MGI:MGI:5529403 NCBI chr13:49,250,301...49,277,152
Ensembl chr13:49,250,301...49,277,152
JBrowse link
G Setd1a SET domain containing 1A, histone lysine methyltransferase ISO MGI:MGI:5568936 (MGI:MGI:5563281|PMID:24550110), (MGI:MGI:6189337|PMID:29490266) RGD PMID:24550110, PMID:29490266 MGI:MGI:5563281, MGI:MGI:6189337 NCBI chr 1:199,222,584...199,247,993
Ensembl chr 1:199,225,100...199,247,988
JBrowse link
G Setd1b SET domain containing 1B, histone lysine methyltransferase ISO (PMID:17355966) RGD PMID:17355966 NCBI chr12:38,843,167...38,869,180
Ensembl chr12:38,845,621...38,869,346
JBrowse link
G Setd3 SET domain containing 3, actin histidine methyltransferase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:132,023,128...132,090,072
Ensembl chr 6:132,023,945...132,075,875
JBrowse link
G Setmar SET domain and mariner transposase fusion gene ISO
ISS
(PMID:16332963)
GO_REF:0000024
RGD
UniProt
PMID:16332963 GO_REF:0000024 NCBI chr 4:140,092,346...140,104,495
Ensembl chr 4:140,092,352...140,105,316
JBrowse link
G Wdr5 WD repeat domain 5 ISO
IBA
ISS
(MGI:MGI:5529403|PMID:24051374)
PMID:21873635
(PMID:17355966), (PMID:19556245)
GO_REF:0000024
RGD
UniProt
PMID:17355966, PMID:19556245, PMID:24051374, PMID:21873635 GO_REF:0000024, MGI:MGI:5529403, RGD:13792537 NCBI chr 3:6,061,892...6,080,724
Ensembl chr 3:6,061,940...6,080,680
JBrowse link
G Wdr5b WD repeat domain 5B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:67,645,959...67,647,818
Ensembl chr11:67,645,965...67,647,818
JBrowse link
G Wdr82 WD repeat domain 82 ISO (MGI:MGI:4946134|PMID:21123813)
(PMID:17355966)
RGD PMID:17355966, PMID:21123813 MGI:MGI:4946134 NCBI chr 8:114,866,769...114,886,208
Ensembl chr 8:114,866,768...114,884,635
JBrowse link
histone H3-K4 dimethylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kmt2a lysine methyltransferase 2A ISO MGI:MGI:3839794 (MGI:MGI:5638946|PMID:25834037)
(PMID:25561738)
RGD PMID:25561738, PMID:25834037 MGI:MGI:5638946 NCBI chr 8:49,110,407...49,185,872
Ensembl chr 8:49,114,990...49,158,971
JBrowse link
G Kmt2b lysine methyltransferase 2B ISO (PMID:25561738) RGD PMID:25561738 NCBI chr 1:89,022,889...89,042,176
Ensembl chr 1:89,023,200...89,042,176
JBrowse link
G Kmt2d lysine methyltransferase 2D ISO (PMID:26320581) RGD PMID:26320581 NCBI chr 7:140,507,137...140,542,479
Ensembl chr 7:140,489,492...140,546,908
JBrowse link
G Prdm9 PR/SET domain 9 ISS
ISO
GO_REF:0000024
(MGI:MGI:5604977|PMID:24785241), (MGI:MGI:5784565|PMID:27362481), (MGI:MGI:6355794|PMID:24095733)
UniProt
RGD
PMID:24095733, PMID:24785241, PMID:27362481 GO_REF:0000024, MGI:MGI:5604977, MGI:MGI:5784565, MGI:MGI:6355794 NCBI chr 1:57,533,602...57,555,155
Ensembl chr 1:57,533,577...57,555,048
JBrowse link
G Setd1a SET domain containing 1A, histone lysine methyltransferase ISO (PMID:25561738) RGD PMID:25561738 NCBI chr 1:199,222,584...199,247,993
Ensembl chr 1:199,225,100...199,247,988
JBrowse link
G Setd1b SET domain containing 1B, histone lysine methyltransferase IEA
ISO
GO_REF:0000107
(PMID:25561738)
Ensembl
RGD
PMID:25561738 GO_REF:0000107 NCBI chr12:38,843,167...38,869,180
Ensembl chr12:38,845,621...38,869,346
JBrowse link
histone H3-K4 monomethylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kmt2a lysine methyltransferase 2A ISO (PMID:25561738), (PMID:26324722) RGD PMID:25561738, PMID:26324722 NCBI chr 8:49,110,407...49,185,872
Ensembl chr 8:49,114,990...49,158,971
JBrowse link
G Kmt2b lysine methyltransferase 2B ISO (PMID:25561738) RGD PMID:25561738 NCBI chr 1:89,022,889...89,042,176
Ensembl chr 1:89,023,200...89,042,176
JBrowse link
G Kmt2c lysine methyltransferase 2C ISO (PMID:26324722) RGD PMID:26324722 NCBI chr 4:82,506...109,986
NCBI chr 4:6,083,650...6,294,413
Ensembl chr 4:6,083,736...6,292,516
JBrowse link
G Kmt2d lysine methyltransferase 2D ISO (PMID:26320581) RGD PMID:26320581 NCBI chr 7:140,507,137...140,542,479
Ensembl chr 7:140,489,492...140,546,908
JBrowse link
G Prdm9 PR/SET domain 9 ISO
ISS
(PMID:26833727)
(MGI:MGI:5604977|PMID:24785241), (MGI:MGI:5784565|PMID:27362481), (MGI:MGI:6355794|PMID:24095733)
GO_REF:0000024
RGD
UniProt
PMID:24095733, PMID:24785241, PMID:26833727, PMID:27362481 GO_REF:0000024, MGI:MGI:5604977, MGI:MGI:5784565, MGI:MGI:6355794 NCBI chr 1:57,533,602...57,555,155
Ensembl chr 1:57,533,577...57,555,048
JBrowse link
G Rlf RLF zinc finger ISO MGI:MGI:5515366 (MGI:MGI:5693990|PMID:25857663) RGD PMID:25857663 MGI:MGI:5693990 NCBI chr 5:140,107,144...140,162,698
Ensembl chr 5:140,107,275...140,162,642
JBrowse link
G Setd1a SET domain containing 1A, histone lysine methyltransferase ISO (PMID:25561738) RGD PMID:25561738 NCBI chr 1:199,222,584...199,247,993
Ensembl chr 1:199,225,100...199,247,988
JBrowse link
G Setd1b SET domain containing 1B, histone lysine methyltransferase IEA
ISO
GO_REF:0000107
(PMID:25561738)
Ensembl
RGD
PMID:25561738 GO_REF:0000107 NCBI chr12:38,843,167...38,869,180
Ensembl chr12:38,845,621...38,869,346
JBrowse link
histone H3-K4 trimethylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid4a AT-rich interaction domain 4A ISO MGI:MGI:3687004 (MGI:MGI:3815238|PMID:18728284) RGD PMID:18728284 MGI:MGI:3815238 NCBI chr 6:93,461,713...93,532,901
Ensembl chr 6:93,461,713...93,532,901
JBrowse link
G Bend3 BEN domain containing 3 ISO (PMID:26100909) RGD PMID:26100909 NCBI chr20:48,248,193...48,270,905
Ensembl chr20:48,248,455...48,268,147
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (PMID:16024656)
(MGI:MGI:3849235|PMID:19345177)
RGD PMID:16024656, PMID:19345177 MGI:MGI:3849235 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G H1f2 H1.2 linker histone, cluster member ISO MGI:MGI:107502|MGI:MGI:1931527 (MGI:MGI:5691516|PMID:22701719) RGD PMID:22701719 MGI:MGI:5691516 NCBI chr17:43,638,938...43,640,445
Ensembl chr17:43,639,749...43,640,387
JBrowse link
G H1f4 H1.4 linker histone, cluster member ISO MGI:MGI:107502|MGI:MGI:1931526 (MGI:MGI:5691516|PMID:22701719) RGD PMID:22701719 MGI:MGI:5691516 NCBI chr17:43,734,461...43,735,120
Ensembl chr17:43,734,461...43,735,120
JBrowse link
G H4f3 H1.3 linker histone, cluster member ISO MGI:MGI:1931526|MGI:MGI:1931527 (MGI:MGI:5691516|PMID:22701719) RGD PMID:22701719 MGI:MGI:5691516 NCBI chr17:43,797,711...43,798,450
Ensembl chr17:43,797,721...43,798,383
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO (PMID:20861184)
MGI:MGI:3839794 (MGI:MGI:5638946|PMID:25834037)
RGD PMID:20861184, PMID:25834037 MGI:MGI:5638946 NCBI chr 8:49,110,407...49,185,872
Ensembl chr 8:49,114,990...49,158,971
JBrowse link
G Kmt2b lysine methyltransferase 2B ISO MGI:MGI:2176052|MGI:MGI:3056522|MGI:MGI:3623309 (MGI:MGI:4849597|PMID:20808952) RGD PMID:20808952 MGI:MGI:4849597 NCBI chr 1:89,022,889...89,042,176
Ensembl chr 1:89,023,200...89,042,176
JBrowse link
G Kmt2d lysine methyltransferase 2D ISO (PMID:26320581) RGD PMID:26320581 NCBI chr 7:140,507,137...140,542,479
Ensembl chr 7:140,489,492...140,546,908
JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO MGI:MGI:2444959|MGI:MGI:2682319|MGI:MGI:3046462 (MGI:MGI:3692812|PMID:17021013) RGD PMID:17021013 MGI:MGI:3692812 NCBI chr 3:150,919,317...150,990,391
Ensembl chr 3:150,919,317...150,960,030
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:23353889)
Ensembl
UniProt
RGD
PMID:23353889 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:71,540,870...71,585,906
Ensembl chr  X:71,528,988...71,585,908
JBrowse link
G Prdm9 PR/SET domain 9 ISO
ISS
(PMID:26833727)
(MGI:MGI:5604977|PMID:24785241), (MGI:MGI:5784565|PMID:27362481)
GO_REF:0000024
RGD
UniProt
PMID:24785241, PMID:26833727, PMID:27362481 GO_REF:0000024, MGI:MGI:5604977, MGI:MGI:5784565 NCBI chr 1:57,533,602...57,555,155
Ensembl chr 1:57,533,577...57,555,048
JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) ISO (MGI:MGI:3849235|PMID:19345177) RGD PMID:19345177 MGI:MGI:3849235 NCBI chr 3:111,478,350...111,537,941
Ensembl chr 3:111,478,382...111,537,941
JBrowse link
G Setd1a SET domain containing 1A, histone lysine methyltransferase ISO (PMID:25561738) RGD PMID:25561738 NCBI chr 1:199,222,584...199,247,993
Ensembl chr 1:199,225,100...199,247,988
JBrowse link
G Setd1b SET domain containing 1B, histone lysine methyltransferase IEA
ISO
GO_REF:0000107
(PMID:25561738)
Ensembl
RGD
PMID:25561738 GO_REF:0000107 NCBI chr12:38,843,167...38,869,180
Ensembl chr12:38,845,621...38,869,346
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO (PMID:23353889)
(MGI:MGI:5473922|PMID:23353889)
RGD PMID:23353889 MGI:MGI:5473922 NCBI chr 2:238,719,389...238,802,975
Ensembl chr 2:238,720,835...238,803,024
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 ISO (PMID:23353889) RGD PMID:23353889 NCBI chr 4:115,060,702...115,160,800
Ensembl chr 4:115,066,309...115,157,263
JBrowse link
G Wdr61 WD repeat domain 61 ISO
ISS
(PMID:16024656)
GO_REF:0000024
RGD
UniProt
PMID:16024656 GO_REF:0000024 NCBI chr 8:59,296,339...59,313,663
Ensembl chr 8:59,296,346...59,313,574
JBrowse link
G Wdr82 WD repeat domain 82 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:114,866,769...114,886,208
Ensembl chr 8:114,866,768...114,884,635
JBrowse link
G Zfp335 zinc finger protein 335 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:23178126)
Ensembl
UniProt
RGD
PMID:23178126, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 3:161,357,201...161,378,073
Ensembl chr 3:161,357,278...161,376,119
JBrowse link
negative regulation of histone H3-K4 methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcor BCL6 co-repressor ISO (PMID:19578371) RGD PMID:19578371 NCBI chr  X:11,570,155...11,692,022
Ensembl chr  X:11,648,989...11,691,099
JBrowse link
G Brca1 BRCA1, DNA repair associated ISO
IEA
(MGI:MGI:5009779|PMID:20820192)
GO_REF:0000107
RGD
Ensembl
PMID:20820192 GO_REF:0000107, MGI:MGI:5009779 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681
JBrowse link
G Gfi1b growth factor independent 1B transcriptional repressor ISO (MGI:MGI:5284774|PMID:17707228) RGD PMID:17707228 MGI:MGI:5284774 NCBI chr 3:7,190,721...7,203,444
Ensembl chr 3:7,190,722...7,203,420
JBrowse link
G Kdm1a lysine demethylase 1A ISO (MGI:MGI:4461095|PMID:20123967) RGD PMID:20123967 MGI:MGI:4461095 NCBI chr 5:154,909,003...154,965,171
Ensembl chr 5:154,909,003...154,965,171
JBrowse link
G Macroh2a1 macroH2A.1 histone ISO (PMID:25526730) RGD PMID:25526730 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Prmt6 protein arginine methyltransferase 6 ISO (MGI:MGI:5504576|PMID:22904064) RGD PMID:22904064 MGI:MGI:5504576 NCBI chr 2:213,173,403...213,180,721
Ensembl chr 2:213,173,403...213,178,632
Ensembl chr 2:213,173,403...213,178,632
JBrowse link
G Wdr5 WD repeat domain 5 ISO (PMID:26324722) RGD PMID:26324722 NCBI chr 3:6,061,892...6,080,724
Ensembl chr 3:6,061,940...6,080,680
JBrowse link
positive regulation of histone H3-K4 methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Auts2 activator of transcription and developmental regulator AUTS2 ISO
IEA
(PMID:25519132)
GO_REF:0000107
RGD
Ensembl
PMID:25519132 GO_REF:0000107 NCBI chr12:27,155,362...28,252,752
Ensembl chr12:28,212,333...28,251,816
JBrowse link
G Brca1 BRCA1, DNA repair associated ISO
IEA
(PMID:20820192)
GO_REF:0000107
(MGI:MGI:5009779|PMID:20820192)
RGD
Ensembl
PMID:20820192 GO_REF:0000107, MGI:MGI:5009779 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (PMID:16024656)
(MGI:MGI:3849235|PMID:19345177)
RGD PMID:16024656, PMID:19345177 MGI:MGI:3849235 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Dnmt1 DNA methyltransferase 1 IEA
ISO
GO_REF:0000107
(PMID:18413740)
Ensembl
RGD
PMID:18413740 GO_REF:0000107 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO (PMID:18413740) RGD PMID:18413740 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Gcg glucagon ISO
IEA
MGI:MGI:1344416|MGI:MGI:1918367|MGI:MGI:2155884 (MGI:MGI:5529403|PMID:24051374)
GO_REF:0000107
RGD
Ensembl
PMID:24051374 GO_REF:0000107, MGI:MGI:5529403 NCBI chr 3:48,442,635...48,451,650
Ensembl chr 3:48,442,635...48,451,650
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO (MGI:MGI:5607228|PMID:21113167) RGD PMID:21113167 MGI:MGI:5607228 NCBI chr 8:49,110,407...49,185,872
Ensembl chr 8:49,114,990...49,158,971
JBrowse link
G Myb MYB proto-oncogene, transcription factor ISO (PMID:20484083) RGD PMID:20484083 NCBI chr 1:16,658,178...16,690,135
Ensembl chr 1:16,659,442...16,687,817
JBrowse link
G Nelfa negative elongation factor complex member A IMP RGD PMID:21623364 RGD:9693718 NCBI chr14:82,093,837...82,117,913
Ensembl chr14:82,093,837...82,117,906
JBrowse link
G Nelfe negative elongation factor complex member E IMP RGD PMID:21623364 RGD:9693718 NCBI chr20:4,530,328...4,536,085
Ensembl chr20:4,530,342...4,536,209
JBrowse link
G Paxip1 PAX interacting protein 1 ISO (MGI:MGI:4354659|PMID:19583951), (MGI:MGI:4821506|PMID:20671152) RGD PMID:19583951, PMID:20671152 MGI:MGI:4354659, MGI:MGI:4821506 NCBI chr 4:3,956,931...4,008,326
Ensembl chr 4:3,959,640...4,008,326
JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) ISO (MGI:MGI:3849235|PMID:19345177) RGD PMID:19345177 MGI:MGI:3849235 NCBI chr 3:111,478,350...111,537,941
Ensembl chr 3:111,478,382...111,537,941
JBrowse link
G Smad4 SMAD family member 4 ISO
IEA
(MGI:MGI:3769957|PMID:16330325)
GO_REF:0000107
RGD
Ensembl
PMID:16330325 GO_REF:0000107, MGI:MGI:3769957 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Snw1 SNW domain containing 1 ISO (PMID:19818711) RGD PMID:19818711 NCBI chr 6:111,483,698...111,507,782
Ensembl chr 6:111,483,703...111,507,782
JBrowse link
G Wdr5 WD repeat domain 5 ISO (PMID:26324722) RGD PMID:26324722 NCBI chr 3:6,061,892...6,080,724
Ensembl chr 3:6,061,940...6,080,680
JBrowse link
G Wdr61 WD repeat domain 61 ISO
ISS
(PMID:16024656)
GO_REF:0000024
RGD
UniProt
PMID:16024656 GO_REF:0000024 NCBI chr 8:59,296,339...59,313,663
Ensembl chr 8:59,296,346...59,313,574
JBrowse link
positive regulation of histone H3-K4 trimethylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kmt2e lysine methyltransferase 2E ISO (PMID:23629655) RGD PMID:23629655 NCBI chr 4:8,187,751...8,255,578
Ensembl chr 4:8,187,751...8,255,514
JBrowse link
G Prdm9 PR/SET domain 9 ISS
ISO
GO_REF:0000024
(MGI:MGI:6355794|PMID:24095733)
UniProt
RGD
PMID:24095733 GO_REF:0000024, MGI:MGI:6355794 NCBI chr 1:57,533,602...57,555,155
Ensembl chr 1:57,533,577...57,555,048
JBrowse link
regulation of histone H3-K4 methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcfl CCCTC-binding factor like ISO (PMID:18765639) RGD PMID:18765639 NCBI chr 3:171,145,203...171,168,375
Ensembl chr 3:171,145,584...171,166,454
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 IMP RGD PMID:22514307 RGD:9589166 NCBI chr20:4,576,033...4,592,980
Ensembl chr20:4,576,057...4,592,980
JBrowse link
G Gata3 GATA binding protein 3 ISO (MGI:MGI:5289737|PMID:21867929) RGD PMID:21867929 MGI:MGI:5289737 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:3,058,035...3,073,332
Ensembl chr14:3,058,993...3,068,371
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO (MGI:MGI:3625774|PMID:16618927) RGD PMID:16618927 MGI:MGI:3625774 NCBI chr 8:49,110,407...49,185,872
Ensembl chr 8:49,114,990...49,158,971
JBrowse link
G Kmt2b lysine methyltransferase 2B ISO MGI:MGI:2176052|MGI:MGI:3056522|MGI:MGI:3623309 (MGI:MGI:4849597|PMID:20808952) RGD PMID:20808952 MGI:MGI:4849597 NCBI chr 1:89,022,889...89,042,176
Ensembl chr 1:89,023,200...89,042,176
JBrowse link
G Pih1d1 PIH1 domain containing 1 ISO (PMID:22368283) RGD PMID:22368283 NCBI chr 1:101,151,240...101,156,806
Ensembl chr 1:101,152,734...101,156,805
JBrowse link
G Pygo2 pygopus family PHD finger 2 ISO (MGI:MGI:4821247|PMID:19487454) RGD PMID:19487454 MGI:MGI:4821247 NCBI chr 2:188,757,167...188,762,285
Ensembl chr 2:188,757,489...188,762,282
JBrowse link
G Zfp335 zinc finger protein 335 ISO
IBA
IEA
(MGI:MGI:5468205|PMID:23178126)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:23178126, PMID:21873635 GO_REF:0000107, MGI:MGI:5468205, RGD:13792537 NCBI chr 3:161,357,201...161,378,073
Ensembl chr 3:161,357,278...161,376,119
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      methylation 369
        macromolecule methylation 334
          protein methylation 204
            peptidyl-lysine methylation 143
              histone lysine methylation 128
                histone H3-K4 methylation 59
                  histone H3-K4 dimethylation 6
                  histone H3-K4 monomethylation 8
                  histone H3-K4 trimethylation + 21
                  negative regulation of histone H3-K4 methylation + 7
                  positive regulation of histone H3-K4 methylation + 18
                  regulation of histone H3-K4 methylation + 31
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      organic substance metabolic process 11636
        organonitrogen compound metabolic process 7132
          protein metabolic process 6214
            cellular protein metabolic process 5552
              cellular protein modification process 3937
                peptidyl-amino acid modification 1316
                  peptidyl-lysine modification 414
                    peptidyl-lysine methylation 143
                      histone lysine methylation 128
                        histone H3-K4 methylation 59
                          histone H3-K4 dimethylation 6
                          histone H3-K4 monomethylation 8
                          histone H3-K4 trimethylation + 21
                          negative regulation of histone H3-K4 methylation + 7
                          positive regulation of histone H3-K4 methylation + 18
                          regulation of histone H3-K4 methylation + 31
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.