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ONTOLOGY REPORT - ANNOTATIONS


Term:biological process involved in interaction with symbiont
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Accession:GO:0051702 term browser browse the term
Definition:An interaction between two organisms living together in more or less intimate association. The term symbiont is used for the smaller (macro) of the two members of a symbiosis; the various forms of symbiosis include parasitism, commensalism and mutualism.
Synonyms:related_synonym: interaction with symbiont


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biological process involved in interaction with symbiont term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDB1 damage specific DNA binding protein 1 IDA (PMID:23137809) AgBase PMID:23137809 NCBI chr11:61,299,451...61,333,105
Ensembl chr11:61,299,451...61,342,596
JBrowse link
G FN1 fibronectin 1 IDA (PMID:12167537), (PMID:12421310), (PMID:19429745) CAFA PMID:12167537, PMID:12421310, PMID:19429745 NCBI chr 2:215,360,862...215,436,167
Ensembl chr 2:215,360,440...215,436,073
JBrowse link
G GPX1 glutathione peroxidase 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:49,357,176...49,358,353
Ensembl chr 3:49,357,176...49,358,358
JBrowse link
G GPX2 glutathione peroxidase 2 ISO (MGI:3608474|PMID:12751789) MGI PMID:12751789 MGI:3608474 NCBI chr14:64,939,158...64,942,745
Ensembl chr14:64,939,152...64,942,905
JBrowse link
G HSPD1 heat shock protein family D (Hsp60) member 1 IMP (PMID:20507888) CAFA PMID:20507888 NCBI chr 2:197,486,584...197,500,274
Ensembl chr 2:197,486,584...197,516,737
JBrowse link
G PLG plasminogen IDA (PMID:12818429) CAFA PMID:12818429 NCBI chr 6:160,702,193...160,754,097
Ensembl chr 6:160,702,238...160,754,097
Ensembl chr 6:160,702,238...160,754,097
JBrowse link
catabolism by host of symbiont cell wall chitin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHIA chitinase acidic ISO (MGI:1931335|PMID:11085997) UniProt PMID:11085997 MGI:1931335 NCBI chr 1:111,290,851...111,320,566
Ensembl chr 1:111,290,851...111,320,566
JBrowse link
catabolism by host of symbiont protein term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA2 annexin A2 IMP (PMID:26812398) AgBase PMID:26812398 NCBI chr15:60,347,151...60,398,025
Ensembl chr15:60,347,134...60,402,883
JBrowse link
cytolysis by host of symbiont cells term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOL1 apolipoprotein L1 IDA (PMID:12621437), (PMID:17192540) BHF-UCL PMID:12621437, PMID:17192540 NCBI chr22:36,253,071...36,267,531
Ensembl chr22:36,253,010...36,267,530
Ensembl chr22:36,253,010...36,267,530
JBrowse link
G CAMP cathelicidin antimicrobial peptide IDA (PMID:20421939) UniProt PMID:20421939 NCBI chr 3:48,223,495...48,225,485
Ensembl chr 3:48,223,347...48,225,491
JBrowse link
G CFHR1 complement factor H related 1 IMP (PMID:23487775) UniProt PMID:23487775 NCBI chr 1:196,819,731...196,832,189
Ensembl chr 1:196,819,757...196,832,189
JBrowse link
G CFHR2 complement factor H related 2 IMP (PMID:23487775) UniProt PMID:23487775 NCBI chr 1:196,943,738...196,959,622
Ensembl chr 1:196,943,738...196,959,622
JBrowse link
G CFHR5 complement factor H related 5 IMP (PMID:23487775) UniProt PMID:23487775 NCBI chr 1:196,975,022...197,009,725
Ensembl chr 1:196,977,556...197,009,678
Ensembl chr 1:196,977,556...197,009,678
JBrowse link
G DEFB130A defensin beta 130A IMP (PMID:28181499) UniProt PMID:28181499 NCBI chr 8:12,310,962...12,318,316
Ensembl chr 8:12,310,962...12,318,316
JBrowse link
G DEFB130B defensin beta 130B IMP (PMID:28181499) UniProt PMID:28181499 NCBI chr 8:12,064,389...12,071,747
Ensembl chr 8:12,064,389...12,071,747
JBrowse link
G F2 coagulation factor II, thrombin IDA (PMID:20421939) UniProtKB PMID:20421939 NCBI chr11:46,719,213...46,739,506
Ensembl chr11:46,719,196...46,739,506
Ensembl chr11:46,719,196...46,739,506
JBrowse link
G HRG histidine rich glycoprotein IDA (PMID:18797515) UniProt PMID:18797515 NCBI chr 3:186,665,975...186,678,235
Ensembl chr 3:186,660,216...186,678,234
Ensembl chr 3:186,660,216...186,678,234
JBrowse link
G KRT6A keratin 6A IMP
IDA
(PMID:23006328) UniProt PMID:23006328 NCBI chr12:52,487,176...52,493,257
Ensembl chr12:52,487,176...52,493,257
JBrowse link
G REG3G regenerating family member 3 gamma IDA (PMID:16931762) UniProt PMID:16931762 NCBI chr 2:79,025,664...79,028,502
Ensembl chr 2:79,025,686...79,028,505
JBrowse link
G ROMO1 reactive oxygen species modulator 1 IDA (PMID:22083756) UniProt PMID:22083756 NCBI chr20:35,699,310...35,700,982
Ensembl chr20:35,699,272...35,700,984
JBrowse link
G SPAG11A sperm associated antigen 11A IMP (PMID:16411022) UniProt PMID:16411022 NCBI chr 8:7,847,923...7,863,797
Ensembl chr 8:7,847,876...7,868,867
JBrowse link
G SPAG11B sperm associated antigen 11B IMP (PMID:16411022) UniProt PMID:16411022 NCBI chr 8:7,447,754...7,463,674
Ensembl chr 8:7,442,684...7,463,674
JBrowse link
host-mediated regulation of intestinal microbiota composition term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRRC19 leucine rich repeat containing 19 ISS UniProt GO_REF:0000024 NCBI chr 9:26,993,136...27,005,672
Ensembl chr 9:26,993,136...27,005,672
JBrowse link
G NAPEPLD N-acyl phosphatidylethanolamine phospholipase D ISS UniProtKB GO_REF:0000024 NCBI chr 7:103,099,776...103,150,001
Ensembl chr 7:103,099,776...103,149,560
JBrowse link
killing by host of symbiont cells term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAMP cathelicidin antimicrobial peptide IEA
IDA
(PMID:16020269), (PMID:16177355) Ensembl
CACAO
PMID:16020269, PMID:16177355 GO_REF:0000107 NCBI chr 3:48,223,495...48,225,485
Ensembl chr 3:48,223,347...48,225,491
JBrowse link
G DCD dermcidin IDA (PMID:15670776) CACAO PMID:15670776 NCBI chr12:54,644,589...54,648,365
Ensembl chr12:54,644,589...54,648,493
JBrowse link
G DEFA1 defensin alpha 1 IDA (PMID:17635867) UniProt PMID:17635867 NCBI chr 8:6,977,649...6,980,120
Ensembl chr 8:6,977,649...6,980,080
JBrowse link
G DEFA1B defensin alpha 1B IDA (PMID:17635867) UniProt PMID:17635867 NCBI chr 8:6,996,766...6,999,202
Ensembl chr 8:6,996,766...6,999,195
JBrowse link
G DEFA5 defensin alpha 5 IDA (PMID:9169780) CACAO PMID:9169780 NCBI chr 8:7,055,304...7,056,739
Ensembl chr 8:7,055,304...7,056,739
JBrowse link
G DEFB103A defensin beta 103A IDA (PMID:16436752) CACAO PMID:16436752 NCBI chr 8:7,881,392...7,882,663
Ensembl chr 8:7,881,392...7,882,663
Ensembl chr 8:7,881,392...7,882,663
Ensembl chr 8:7,881,392...7,882,663
JBrowse link
G DEFB103B defensin beta 103B IDA (PMID:16436752) CACAO PMID:16436752 NCBI chr 8:7,428,888...7,430,348
Ensembl chr 8:7,881,392...7,882,663
Ensembl chr 8:7,881,392...7,882,663
Ensembl chr 8:7,881,392...7,882,663
JBrowse link
G GAPDH glyceraldehyde-3-phosphate dehydrogenase IDA (PMID:22832495) UniProtKB PMID:22832495 NCBI chr12:6,534,517...6,538,371
Ensembl chr12:6,534,512...6,538,374
JBrowse link
G MBL1P mannose binding lectin 1, pseudogene ISO (MGI:3577322|PMID:15148336) MGI PMID:15148336 MGI:3577322 NCBI chr10:79,920,178...79,923,119
Ensembl chr10:79,920,178...79,923,119
JBrowse link
G MBL2 mannose binding lectin 2 ISO (MGI:3577322|PMID:15148336) MGI PMID:15148336 MGI:3577322 NCBI chr10:52,765,380...52,772,784
Ensembl chr10:52,765,380...52,772,784
Ensembl chr10:52,765,380...52,772,784
JBrowse link
G PF4 platelet factor 4 IDA (PMID:23245326) UniProtKB PMID:23245326 NCBI chr 4:73,980,811...73,982,124
Ensembl chr 4:73,980,811...73,982,027
JBrowse link
maintenance of symbiont-containing vacuole by host term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP1 aquaporin 1 (Colton blood group) IMP (PMID:18665841) UniProtKB PMID:18665841 NCBI chr 7:30,911,853...30,925,516
Ensembl chr 7:30,911,853...30,925,517
Ensembl chr 7:30,911,853...30,925,517
JBrowse link
modulation by host of RNA binding by virus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IMP (PMID:25116364) ParkinsonsUK-UCL PMID:25116364 NCBI chr 1:205,712,822...205,750,220
Ensembl chr 1:205,712,822...205,750,182
JBrowse link
modulation by host of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IFI27 interferon alpha inducible protein 27 IMP (PMID:27777077) UniProt PMID:27777077 NCBI chr14:94,110,736...94,116,690
Ensembl chr14:94,104,836...94,116,698
JBrowse link
modulation by host of viral process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSPA8 heat shock protein family A (Hsp70) member 8 ISO (MGI:5787727|PMID:26581985) AgBase PMID:26581985 MGI:5787727 NCBI chr11:123,057,489...123,062,366
Ensembl chr11:123,057,489...123,063,230
JBrowse link
modulation by host of viral RNA genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXL2 F-box and leucine rich repeat protein 2 IMP (PMID:15893726) UniProtKB PMID:15893726 NCBI chr 3:33,277,025...33,422,698
Ensembl chr 3:33,277,025...33,403,662
JBrowse link
G FMR1 FMRP translational regulator 1 IMP (PMID:24514761) UniProtKB PMID:24514761 NCBI chr  X:147,911,919...147,951,125
Ensembl chr  X:147,911,951...147,951,125
Ensembl chr  X:147,911,951...147,951,125
JBrowse link
G PHB prohibitin ISS UniProt GO_REF:0000024 NCBI chr17:49,404,052...49,414,882
Ensembl chr17:49,404,049...49,414,905
JBrowse link
G VAPB VAMP associated protein B and C IDA (PMID:19515777) AgBase PMID:19515777 NCBI chr20:58,389,211...58,451,101
Ensembl chr20:58,389,229...58,451,101
Ensembl chr20:58,389,229...58,451,101
JBrowse link
modulation by host of viral RNA-binding transcription factor activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IGI (PMID:25116364) ParkinsonsUK-UCL PMID:25116364 NCBI chr 1:205,712,822...205,750,220
Ensembl chr 1:205,712,822...205,750,182
JBrowse link
modulation by host of viral transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PSMC3 proteasome 26S subunit, ATPase 3 IDA (PMID:2194290), (PMID:8419915) GO_Central PMID:2194290, PMID:8419915 NCBI chr11:47,418,775...47,426,473
Ensembl chr11:47,418,769...47,426,473
JBrowse link
negative regulation by host of symbiont molecular function term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA2 annexin A2 IMP (PMID:26812398) AgBase PMID:26812398 NCBI chr15:60,347,151...60,398,025
Ensembl chr15:60,347,134...60,402,883
JBrowse link
G RAB9A RAB9A, member RAS oncogene family IMP (PMID:18787122) AgBase PMID:18787122 NCBI chr  X:13,689,128...13,710,504
Ensembl chr  X:13,689,128...13,710,504
JBrowse link
G SFTPD surfactant protein D IDA (PMID:28228557) AgBase PMID:28228557 NCBI chr10:79,937,740...79,982,236
Ensembl chr10:79,937,740...79,982,614
JBrowse link
negative regulation by host of viral exo-alpha-sialidase activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APCS amyloid P component, serum IDA (PMID:23544079) BHF-UCL PMID:23544079 NCBI chr 1:159,587,826...159,588,865
Ensembl chr 1:159,587,826...159,588,865
JBrowse link
G PTX3 pentraxin 3 IDA (PMID:23544079) BHF-UCL PMID:23544079 NCBI chr 3:157,436,850...157,443,633
Ensembl chr 3:157,436,850...157,443,633
JBrowse link
negative regulation by host of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCL8 C-C motif chemokine ligand 8 IDA (PMID:20181935) ARUK-UCL PMID:20181935 NCBI chr17:34,319,435...34,321,402
Ensembl chr17:34,319,435...34,321,402
JBrowse link
G CCNK cyclin K IDA (PMID:21555514) CACAO PMID:21555514 NCBI chr14:99,481,409...99,512,440
Ensembl chr14:99,481,169...99,535,044
JBrowse link
G CEACAM1 CEA cell adhesion molecule 1 ISO (MGI:55926|PMID:6327825) MGI PMID:6327825 MGI:55926 NCBI chr19:42,507,306...42,528,482
Ensembl chr19:42,507,304...42,561,234
JBrowse link
G DDX3X DEAD-box helicase 3 X-linked ISO (PMID:24380861) AgBase PMID:24380861 NCBI chr  X:41,333,308...41,364,472
Ensembl chr  X:41,333,348...41,364,472
Ensembl chr  X:41,333,348...41,364,472
JBrowse link
G EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 ISS UniProtKB GO_REF:0000024 NCBI chr15:39,934,115...40,035,591
Ensembl chr15:39,934,115...40,035,591
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase IDA (PMID:25244949) AgBase PMID:25244949 NCBI chr 6:161,347,417...162,727,802
Ensembl chr 6:161,347,417...162,727,771
Ensembl chr 6:161,347,417...162,727,771
JBrowse link
G VAPA VAMP associated protein A IDA (PMID:19515777) AgBase PMID:19515777 NCBI chr18:9,914,016...9,960,021
Ensembl chr18:9,914,002...9,960,021
Ensembl chr18:9,914,002...9,960,021
JBrowse link
G VAPB VAMP associated protein B and C IDA (PMID:19515777) AgBase PMID:19515777 NCBI chr20:58,389,211...58,451,101
Ensembl chr20:58,389,229...58,451,101
Ensembl chr20:58,389,229...58,451,101
JBrowse link
G ZBED1 zinc finger BED-type containing 1 IDA (PMID:25210186) UniProt PMID:25210186 NCBI chr  X:2,486,435...2,500,976
NCBI chr  Y:2,486,435...2,500,976
Ensembl chr  X:2,486,414...2,500,976
JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A IDA (PMID:23355615) UniProtKB PMID:23355615 NCBI chr 1:37,474,518...37,484,377
Ensembl chr 1:37,474,580...37,484,377
JBrowse link
negative regulation by host of viral glycoprotein metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APCS amyloid P component, serum IDA (PMID:23544079) BHF-UCL PMID:23544079 NCBI chr 1:159,587,826...159,588,865
Ensembl chr 1:159,587,826...159,588,865
JBrowse link
G PTX3 pentraxin 3 IDA (PMID:23544079) BHF-UCL PMID:23544079 NCBI chr 3:157,436,850...157,443,633
Ensembl chr 3:157,436,850...157,443,633
JBrowse link
negative regulation by host of viral process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APCS amyloid P component, serum IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:159,587,826...159,588,865
Ensembl chr 1:159,587,826...159,588,865
JBrowse link
G CEACAM1 CEA cell adhesion molecule 1 ISO (MGI:1098064|PMID:9343248)
(MGI:2148352|PMID:11483763)
(MGI:3848729|PMID:19358828)
MGI PMID:9343248, PMID:11483763, PMID:19358828 MGI:1098064, MGI:2148352, MGI:3848729 NCBI chr19:42,507,306...42,528,482
Ensembl chr19:42,507,304...42,561,234
JBrowse link
G CRP C-reactive protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:159,712,289...159,714,589
Ensembl chr 1:159,712,289...159,714,589
JBrowse link
G LTF lactotransferrin IMP (PMID:12522210) AgBase PMID:12522210 NCBI chr 3:46,435,645...46,485,234
Ensembl chr 3:46,435,645...46,485,234
JBrowse link
G PTX3 pentraxin 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:157,436,850...157,443,633
Ensembl chr 3:157,436,850...157,443,633
JBrowse link
negative regulation by host of viral release from host cell term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VAPB VAMP associated protein B and C IDA (PMID:19515777) AgBase PMID:19515777 NCBI chr20:58,389,211...58,451,101
Ensembl chr20:58,389,229...58,451,101
Ensembl chr20:58,389,229...58,451,101
JBrowse link
negative regulation by host of viral transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCL3 C-C motif chemokine ligand 3 IDA (PMID:10841574) UniProtKB PMID:10841574 NCBI chr17:36,088,256...36,090,143
Ensembl chr17:36,088,256...36,090,169
JBrowse link
G CCL4 C-C motif chemokine ligand 4 IDA (PMID:10841574) UniProtKB PMID:10841574 NCBI chr17:36,103,827...36,105,614
Ensembl chr17:36,103,827...36,105,621
JBrowse link
G CCL4L1 C-C motif chemokine ligand 4 like 1 IDA (PMID:10841574) UniProtKB PMID:10841574 Ensembl chr17:36,210,924...36,212,878 JBrowse link
G CCL5 C-C motif chemokine ligand 5 IDA (PMID:10841574) UniProtKB PMID:10841574 NCBI chr17:35,871,491...35,880,360
Ensembl chr17:35,871,491...35,880,793
JBrowse link
G HDAC1 histone deacetylase 1 IMP (PMID:16540471) UniProtKB PMID:16540471 NCBI chr 1:32,292,083...32,333,628
Ensembl chr 1:32,292,083...32,333,635
JBrowse link
G HMGA2 high mobility group AT-hook 2 IDA (PMID:17005673) UniProtKB PMID:17005673 NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
JBrowse link
G HMOX1 heme oxygenase 1 ISO (PMID:25086213) AgBase PMID:25086213 NCBI chr22:35,381,096...35,394,207
Ensembl chr22:35,380,361...35,394,207
JBrowse link
G INPP5K inositol polyphosphate-5-phosphatase K IDA (PMID:18774950) UniProtKB PMID:18774950 NCBI chr17:1,494,575...1,516,735
Ensembl chr17:1,494,577...1,516,742
JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit IDA (PMID:2833704) UniProtKB PMID:2833704 NCBI chr 1:58,780,791...58,784,047
Ensembl chr 1:58,780,791...58,784,047
JBrowse link
G POU2F3 POU class 2 homeobox 3 IDA (PMID:14645924) UniProtKB PMID:14645924 NCBI chr11:120,236,638...120,319,945
Ensembl chr11:120,236,640...120,319,945
JBrowse link
G REST RE1 silencing transcription factor IDA (PMID:17555596) UniProtKB PMID:17555596 NCBI chr 4:56,907,900...56,935,847
Ensembl chr 4:56,907,876...56,966,808
Ensembl chr 4:56,907,876...56,966,808
JBrowse link
G TARDBP TAR DNA binding protein IDA (PMID:7745706) BHF-UCL PMID:7745706 NCBI chr 1:11,012,654...11,030,528
Ensembl chr 1:11,012,662...11,030,528
Ensembl chr 1:11,012,662...11,030,528
Ensembl chr 1:11,012,662...11,030,528
JBrowse link
G TFAP4 transcription factor AP-4 NAS
IDA
(PMID:7933101)
(PMID:14645924), (PMID:16540471)
UniProtKB PMID:7933101, PMID:14645924, PMID:16540471 NCBI chr16:4,257,186...4,273,023
Ensembl chr16:4,257,186...4,273,075
JBrowse link
G ZNF639 zinc finger protein 639 IMP (PMID:20484494) UniProtKB PMID:20484494 NCBI chr 3:179,322,876...179,338,583
Ensembl chr 3:179,323,031...179,338,583
JBrowse link
neutrophil-mediated killing of bacterium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZU1 azurocidin 1 IDA (PMID:2312733) UniProtKB PMID:2312733 NCBI chr19:827,837...832,018
Ensembl chr19:825,097...832,018
JBrowse link
neutrophil-mediated killing of fungus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELANE elastase, neutrophil expressed IEA Ensembl GO_REF:0000107 NCBI chr19:850,997...856,250
Ensembl chr19:851,014...856,247
JBrowse link
G NCF1 neutrophil cytosolic factor 1 ISO (MGI:4353632|PMID:11907569) MGI PMID:11907569 MGI:4353632 NCBI chr 7:74,773,962...74,789,376
Ensembl chr 7:74,773,962...74,789,376
JBrowse link
neutrophil-mediated killing of gram-negative bacterium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELANE elastase, neutrophil expressed IDA (PMID:20421939) UniProtKB PMID:20421939 NCBI chr19:850,997...856,250
Ensembl chr19:851,014...856,247
JBrowse link
G F2 coagulation factor II, thrombin IDA (PMID:20421939) UniProtKB PMID:20421939 NCBI chr11:46,719,213...46,739,506
Ensembl chr11:46,719,196...46,739,506
Ensembl chr11:46,719,196...46,739,506
JBrowse link
G TREM1 triggering receptor expressed on myeloid cells 1 ISO (MGI:5471912|PMID:23241959) MGI PMID:23241959 MGI:5471912 NCBI chr 6:41,267,385...41,286,692
Ensembl chr 6:41,267,926...41,286,682
JBrowse link
G TUSC2 tumor suppressor 2, mitochondrial calcium regulator IEA Ensembl GO_REF:0000107 NCBI chr 3:50,324,909...50,328,238
Ensembl chr 3:50,320,027...50,328,251
JBrowse link
neutrophil-mediated killing of gram-positive bacterium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTSG cathepsin G IEA Ensembl GO_REF:0000107 NCBI chr14:24,573,518...24,576,250
Ensembl chr14:24,573,518...24,576,250
JBrowse link
G NCF1 neutrophil cytosolic factor 1 ISO (MGI:4353632|PMID:11907569) MGI PMID:11907569 MGI:4353632 NCBI chr 7:74,773,962...74,789,376
Ensembl chr 7:74,773,962...74,789,376
JBrowse link
positive regulation by host of symbiont catalytic activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone IDA (PMID:23935490) AgBase PMID:23935490 NCBI chr13:52,652,703...52,700,909
Ensembl chr13:52,652,709...52,700,909
JBrowse link
positive regulation by host of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSPA8 heat shock protein family A (Hsp70) member 8 IEA Ensembl GO_REF:0000107 NCBI chr11:123,057,489...123,062,366
Ensembl chr11:123,057,489...123,063,230
JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IMP (PMID:25116364) ParkinsonsUK-UCL PMID:25116364 NCBI chr 1:205,712,822...205,750,220
Ensembl chr 1:205,712,822...205,750,182
JBrowse link
G PPIB peptidylprolyl isomerase B IMP (PMID:15989969) AgBase PMID:15989969 NCBI chr15:64,155,817...64,163,022
Ensembl chr15:64,155,812...64,163,205
Ensembl chr15:64,155,812...64,163,205
JBrowse link
G STOM stomatin IEA Ensembl GO_REF:0000107 NCBI chr 9:121,338,987...121,370,250
Ensembl chr 9:121,338,987...121,370,304
JBrowse link
G TBC1D20 TBC1 domain family member 20 IMP (PMID:17686842) AgBase PMID:17686842 NCBI chr20:435,480...462,543
Ensembl chr20:435,480...462,543
JBrowse link
G VAPA VAMP associated protein A IDA (PMID:19515777) AgBase PMID:19515777 NCBI chr18:9,914,016...9,960,021
Ensembl chr18:9,914,002...9,960,021
Ensembl chr18:9,914,002...9,960,021
JBrowse link
G VAPB VAMP associated protein B and C IDA (PMID:19515777) AgBase PMID:19515777 NCBI chr20:58,389,211...58,451,101
Ensembl chr20:58,389,229...58,451,101
Ensembl chr20:58,389,229...58,451,101
JBrowse link
G YTHDC2 YTH domain containing 2 IMP (PMID:21559518) AgBase PMID:21559518 NCBI chr 5:113,513,683...113,595,284
Ensembl chr 5:113,513,694...113,595,285
JBrowse link
positive regulation by host of viral process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA2 annexin A2 ISO (PMID:25593157) AgBase PMID:25593157 NCBI chr15:60,347,151...60,398,025
Ensembl chr15:60,347,134...60,402,883
JBrowse link
G APOE apolipoprotein E IMP (PMID:25122793) AgBase PMID:25122793 NCBI chr19:44,905,796...44,909,393
Ensembl chr19:44,905,791...44,909,393
JBrowse link
G CAV2 caveolin 2 IMP (PMID:25556234) AgBase PMID:25556234 NCBI chr 7:116,499,738...116,508,541
Ensembl chr 7:116,287,380...116,508,541
JBrowse link
G CEACAM1 CEA cell adhesion molecule 1 ISO (MGI:1098064|PMID:9343248)
(MGI:2148352|PMID:11483763)
MGI PMID:9343248, PMID:11483763 MGI:1098064, MGI:2148352 NCBI chr19:42,507,306...42,528,482
Ensembl chr19:42,507,304...42,561,234
JBrowse link
G CFL1 cofilin 1 IMP (PMID:25556234) AgBase PMID:25556234 NCBI chr11:65,854,673...65,858,180
Ensembl chr11:65,823,022...65,862,026
JBrowse link
G CSF1R colony stimulating factor 1 receptor IEA Ensembl GO_REF:0000107 NCBI chr 5:150,053,295...150,113,365
Ensembl chr 5:150,053,291...150,113,372
JBrowse link
G IFNG interferon gamma ISO (MGI:4840165|PMID:20889566) ARUK-UCL PMID:20889566 MGI:4840165 NCBI chr12:68,154,768...68,159,740
Ensembl chr12:68,154,768...68,159,740
JBrowse link
G IGF2R insulin like growth factor 2 receptor IMP (PMID:20889566) ARUK-UCL PMID:20889566 NCBI chr 6:159,969,082...160,111,504
Ensembl chr 6:159,969,082...160,113,507
Ensembl chr 6:159,969,082...160,113,507
JBrowse link
G PC pyruvate carboxylase IMP (PMID:23861867) AgBase PMID:23861867 NCBI chr11:66,848,420...66,958,418
Ensembl chr11:66,848,417...66,958,386
JBrowse link
G PPIB peptidylprolyl isomerase B IMP (PMID:15989969) AgBase PMID:15989969 NCBI chr15:64,155,817...64,163,022
Ensembl chr15:64,155,812...64,163,205
Ensembl chr15:64,155,812...64,163,205
JBrowse link
G ZNF502 zinc finger protein 502 IMP (PMID:25556234) AgBase PMID:25556234 NCBI chr 3:44,712,660...44,723,831
Ensembl chr 3:44,712,643...44,723,831
JBrowse link
positive regulation by host of viral release from host cell term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAV2 caveolin 2 IMP (PMID:25556234) AgBase PMID:25556234 NCBI chr 7:116,499,738...116,508,541
Ensembl chr 7:116,287,380...116,508,541
JBrowse link
G PC pyruvate carboxylase IMP (PMID:23861867) AgBase PMID:23861867 NCBI chr11:66,848,420...66,958,418
Ensembl chr11:66,848,417...66,958,386
JBrowse link
G VAPA VAMP associated protein A IDA (PMID:19515777) AgBase PMID:19515777 NCBI chr18:9,914,016...9,960,021
Ensembl chr18:9,914,002...9,960,021
Ensembl chr18:9,914,002...9,960,021
JBrowse link
G VAPB VAMP associated protein B and C IDA (PMID:19515777) AgBase PMID:19515777 NCBI chr20:58,389,211...58,451,101
Ensembl chr20:58,389,229...58,451,101
Ensembl chr20:58,389,229...58,451,101
JBrowse link
G ZNF502 zinc finger protein 502 IMP (PMID:25556234) AgBase PMID:25556234 NCBI chr 3:44,712,660...44,723,831
Ensembl chr 3:44,712,643...44,723,831
JBrowse link
positive regulation by host of viral transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNT1 cyclin T1 NAS (PMID:25116364) ParkinsonsUK-UCL PMID:25116364 NCBI chr12:48,688,458...48,716,707
Ensembl chr12:48,688,458...48,716,998
JBrowse link
G CHD1 chromodomain helicase DNA binding protein 1 IMP (PMID:25297984) CACAO PMID:25297984 NCBI chr 5:98,853,985...98,929,772
Ensembl chr 5:98,853,985...98,929,007
Ensembl chr 5:98,853,985...98,929,007
JBrowse link
G CTDP1 CTD phosphatase subunit 1 IDA (PMID:15723517) CAFA PMID:15723517 NCBI chr18:79,679,803...79,756,625
Ensembl chr18:79,679,801...79,756,623
Ensembl chr18:79,679,801...79,756,623
JBrowse link
G EP300 E1A binding protein p300 IDA (PMID:16687403) BHF-UCL PMID:16687403 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,592...41,180,077
JBrowse link
G FKBP8 FKBP prolyl isomerase 8 ISO (PMID:26748656) AgBase PMID:26748656 NCBI chr19:18,531,763...18,543,573
Ensembl chr19:18,531,751...18,544,077
JBrowse link
G HPN hepsin IDA (PMID:15614436) UniProtKB PMID:15614436 NCBI chr19:35,040,506...35,066,573
Ensembl chr19:35,040,506...35,066,571
JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit IDA (PMID:2833704) UniProtKB PMID:2833704 NCBI chr 1:58,780,791...58,784,047
Ensembl chr 1:58,780,791...58,784,047
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 IDA (PMID:7657162) UniProtKB PMID:7657162 NCBI chr 4:108,047,548...108,168,932
Ensembl chr 4:108,047,545...108,168,956
JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IGI (PMID:25116364) ParkinsonsUK-UCL PMID:25116364 NCBI chr 1:205,712,822...205,750,220
Ensembl chr 1:205,712,822...205,750,182
JBrowse link
G RRP1B ribosomal RNA processing 1B IMP (PMID:26311876) UniProtKB PMID:26311876 NCBI chr21:43,659,560...43,696,079
Ensembl chr21:43,659,560...43,696,079
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 IMP (PMID:16687403) BHF-UCL PMID:16687403 NCBI chr19:10,960,997...11,062,277
Ensembl chr19:10,960,932...11,079,426
Ensembl chr19:10,960,932...11,079,426
JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 IMP (PMID:16687403) BHF-UCL PMID:16687403 NCBI chr22:23,786,966...23,838,009
Ensembl chr22:23,786,931...23,838,008
Ensembl chr22:23,786,931...23,838,008
JBrowse link
G SNW1 SNW domain containing 1 IDA
IMP
(PMID:15905409)
(PMID:19818711)
UniProtKB PMID:15905409, PMID:19818711 NCBI chr14:77,717,599...77,761,156
Ensembl chr14:77,717,599...77,761,207
JBrowse link
G SP1 Sp1 transcription factor IDA (PMID:2833704) UniProtKB PMID:2833704 NCBI chr12:53,380,176...53,416,446
Ensembl chr12:53,380,176...53,416,446
JBrowse link
G TAF11 TATA-box binding protein associated factor 11 IDA (PMID:9108034) UniProtKB PMID:9108034 NCBI chr 6:34,877,462...34,888,071
Ensembl chr 6:34,877,462...34,888,071
JBrowse link
G TFAP4 transcription factor AP-4 IDA (PMID:2833704) UniProtKB PMID:2833704 NCBI chr16:4,257,186...4,273,023
Ensembl chr16:4,257,186...4,273,075
JBrowse link
G ZNF639 zinc finger protein 639 IMP (PMID:20484494) UniProtKB PMID:20484494 NCBI chr 3:179,322,876...179,338,583
Ensembl chr 3:179,323,031...179,338,583
JBrowse link
positive regulation of neutrophil mediated killing of fungus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARG1 arginase 1 IMP (PMID:15546957) UniProtKB PMID:15546957 NCBI chr 6:131,573,226...131,584,329
Ensembl chr 6:131,470,832...131,584,332
JBrowse link
G CXCL1 C-X-C motif chemokine ligand 1 ISO (MGI:5586806|PMID:10725737) UniProt PMID:10725737 MGI:5586806 NCBI chr 4:73,869,393...73,871,308
Ensembl chr 4:73,869,393...73,871,308
JBrowse link
G POMC proopiomelanocortin IDA (PMID:10670585) UniProt PMID:10670585 NCBI chr 2:25,160,860...25,168,580
Ensembl chr 2:25,160,853...25,168,903
JBrowse link
positive regulation of neutrophil mediated killing of gram-negative bacterium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G F2RL1 F2R like trypsin receptor 1 IDA (PMID:21501162) UniProtKB PMID:21501162 NCBI chr 5:76,819,030...76,835,315
Ensembl chr 5:76,818,933...76,835,315
JBrowse link
programmed cell death induced by symbiont term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G JAK2 Janus kinase 2 ISO (MGI:5009182|PMID:12426001) MGI PMID:12426001 MGI:5009182 NCBI chr 9:4,984,390...5,129,948
Ensembl chr 9:4,984,390...5,128,183
Ensembl chr 9:4,984,390...5,128,183
JBrowse link
regulation of neutrophil mediated killing of gram-negative bacterium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CXCL6 C-X-C motif chemokine ligand 6 IEA Ensembl GO_REF:0000107 NCBI chr 4:73,836,678...73,838,760
Ensembl chr 4:73,836,640...73,849,064
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18672
    biological process involved in interspecies interaction between organisms 2575
      biological process involved in symbiotic interaction 1038
        biological process involved in interaction with symbiont 110
          acquisition of nutrients from symbiont + 0
          detection of symbiont + 0
          killing by host of symbiont cells + 35
          lectin-induced modified bacterial internalization 0
          modulation by host of symbiont process + 68
          programmed cell death induced by symbiont + 1
          translocation of molecules into symbiont + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.