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ONTOLOGY REPORT - ANNOTATIONS


Term:biological process involved in interaction with symbiont
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Accession:GO:0051702 term browser browse the term
Definition:An interaction between two organisms living together in more or less intimate association. The term symbiont is used for the smaller (macro) of the two members of a symbiosis; the various forms of symbiosis include parasitism, commensalism and mutualism.
Synonyms:related_synonym: interaction with symbiont


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biological process involved in interaction with symbiont term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDB1 damage specific DNA binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:10,171,554...10,201,602
Ensembl chr 2:10,171,499...10,201,602
JBrowse link
G FN1 fibronectin 1 IEA Ensembl GO_REF:0000107 NCBI chr15:117,658,158...117,737,145
Ensembl chr15:117,658,099...117,731,014
JBrowse link
G GPX1 glutathione peroxidase 1 IEA Ensembl GO_REF:0000107 NCBI chr13:31,916,269...31,917,337
Ensembl chr13:31,914,932...31,917,335
JBrowse link
G GPX2 glutathione peroxidase 2 ISO (MGI:3608474|PMID:12751789) MGI PMID:12751789 MGI:3608474 NCBI chr 7:89,007,636...89,011,620
Ensembl chr 7:89,007,369...89,011,620
JBrowse link
G HSPD1 heat shock protein family D (Hsp60) member 1 IEA Ensembl GO_REF:0000107 NCBI chr15:101,360,355...101,373,498
Ensembl chr15:101,360,094...101,373,527
JBrowse link
G PLG plasminogen IEA Ensembl GO_REF:0000107 NCBI chr 1:7,062,399...7,109,521
Ensembl chr 1:7,061,191...7,110,555
JBrowse link
catabolism by host of symbiont cell wall chitin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHIA chitinase acidic ISO (MGI:1931335|PMID:11085997) UniProt PMID:11085997 MGI:1931335 NCBI chr 4:109,035,323...109,046,499
Ensembl chr 4:109,035,326...109,046,499
JBrowse link
catabolism by host of symbiont protein term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA2 annexin A2 IEA Ensembl GO_REF:0000107 NCBI chr 1:111,588,721...111,635,064
Ensembl chr 1:111,588,306...111,635,064
JBrowse link
cytolysis by host of symbiont cells term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G F2 coagulation factor II, thrombin IEA Ensembl GO_REF:0000107 NCBI chr 2:15,793,257...15,819,151
Ensembl chr 2:15,791,451...15,819,138
JBrowse link
G HRG histidine rich glycoprotein IEA Ensembl GO_REF:0000107 NCBI chr13:124,505,305...124,516,387
Ensembl chr13:124,505,303...124,516,384
JBrowse link
G LOC110257049 beta-defensin 130-like ISO (PMID:28181499) UniProt PMID:28181499 NCBI chr15:38,189,899...38,195,975 JBrowse link
G PMAP-36 antibacterial peptide ISO (PMID:20421939) UniProt PMID:20421939 NCBI chr13:30,991,289...30,993,023
Ensembl chr13:30,991,273...30,993,023
JBrowse link
G REG3G regenerating islet-derived 3 gamma ISO (PMID:16931762) UniProt PMID:16931762 NCBI chr 3:64,847,629...64,850,365 JBrowse link
G ROMO1 reactive oxygen species modulator 1 IEA Ensembl GO_REF:0000107 NCBI chr17:39,029,221...39,030,941
Ensembl chr17:39,029,458...39,030,941
JBrowse link
G SPAG11B sperm associated antigen 11B ISO (PMID:16411022) UniProt PMID:16411022 NCBI chr15:38,010,858...38,020,474 JBrowse link
host-mediated regulation of intestinal microbiota composition term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRRC19 leucine rich repeat containing 19 IEA Ensembl GO_REF:0000107 NCBI chr 1:196,129,816...196,142,696
Ensembl chr 1:196,129,905...196,142,701
JBrowse link
G NAPEPLD N-acyl phosphatidylethanolamine phospholipase D IEA Ensembl GO_REF:0000107 NCBI chr 9:103,210,655...103,309,018
Ensembl chr 9:103,210,748...103,262,454
JBrowse link
killing by host of symbiont cells term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAPDH glyceraldehyde-3-phosphate dehydrogenase IEA Ensembl GO_REF:0000107 NCBI chr 5:64,129,678...64,135,194
Ensembl chr 5:64,129,680...64,133,991
JBrowse link
G LOC100524373 platelet factor 4 ISO (PMID:23245326) UniProtKB PMID:23245326
G LOC110255221 antibacterial peptide PMAP-37 ISO (MGI:3611523|PMID:16177355) MGI PMID:16177355 MGI:3611523 NCBI chr13:31,011,029...31,013,164 JBrowse link
G LOC404703 prepro-beta-defensin 3 ISO (PMID:16436752) CACAO PMID:16436752 NCBI chr15:37,960,248...38,065,632
Ensembl chr15:37,957,488...38,066,223
JBrowse link
G MBL2 mannose binding lectin 2 IEA Ensembl GO_REF:0000107 NCBI chr14:97,103,926...97,107,635
Ensembl chr14:97,102,894...97,108,936
JBrowse link
G PMAP-36 antibacterial peptide ISO (PMID:16020269), (PMID:16177355) CACAO PMID:16020269, PMID:16177355 NCBI chr13:30,991,289...30,993,023
Ensembl chr13:30,991,273...30,993,023
JBrowse link
maintenance of symbiont-containing vacuole by host term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP1 aquaporin 1 (Colton blood group) ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr18:42,063,482...42,076,741 JBrowse link
modulation by host of RNA binding by virus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:66,398,845...66,435,548
Ensembl chr 9:66,398,227...66,435,577
JBrowse link
modulation by host of viral process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSPA8 heat shock protein family A (Hsp70) member 8 ISO (MGI:5787727|PMID:26581985) AgBase PMID:26581985 MGI:5787727 NCBI chr 9:49,982,278...49,986,760
Ensembl chr 9:49,982,284...49,990,508
JBrowse link
modulation by host of viral RNA genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXL2 F-box and leucine rich repeat protein 2 IEA Ensembl GO_REF:0000107 NCBI chr13:19,128,145...19,206,458
Ensembl chr13:19,127,358...19,221,241
JBrowse link
G FMR1 FMRP translational regulator 1 IEA Ensembl GO_REF:0000107 NCBI chr  X:120,361,232...120,400,282
Ensembl chr  X:120,361,229...120,399,835
JBrowse link
G PHB prohibitin IEA Ensembl GO_REF:0000107 NCBI chr12:25,596,520...25,609,693
Ensembl chr12:25,584,443...25,609,656
JBrowse link
G VAPB VAMP associated protein B and C ISO (PMID:19515777) AgBase PMID:19515777 NCBI chr17:58,594,749...58,644,925
Ensembl chr17:58,594,749...58,644,918
JBrowse link
modulation by host of viral RNA-binding transcription factor activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:66,398,845...66,435,548
Ensembl chr 9:66,398,227...66,435,577
JBrowse link
modulation by host of viral transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PSMC3 proteasome 26S subunit, ATPase 3 IEA Ensembl GO_REF:0000107 NCBI chr 2:15,185,482...15,191,189
Ensembl chr 2:15,066,547...15,193,085
JBrowse link
G RAPSN receptor associated protein of the synapse IEA Ensembl GO_REF:0000107 NCBI chr 2:15,166,968...15,181,011
Ensembl chr 2:15,066,547...15,193,085
JBrowse link
negative regulation by host of symbiont molecular function term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA2 annexin A2 IEA Ensembl GO_REF:0000107 NCBI chr 1:111,588,721...111,635,064
Ensembl chr 1:111,588,306...111,635,064
JBrowse link
G RAB9A RAB9A, member RAS oncogene family IEA Ensembl GO_REF:0000107 NCBI chr  X:10,328,085...10,349,399
Ensembl chr  X:10,293,757...10,349,387
JBrowse link
G SFTPD surfactant protein D IEA Ensembl GO_REF:0000107 NCBI chr14:82,051,400...82,069,258
Ensembl chr14:82,051,451...82,067,976
JBrowse link
negative regulation by host of viral exo-alpha-sialidase activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APCS amyloid P component, serum IEA Ensembl GO_REF:0000107 NCBI chr 4:90,900,585...90,901,854
Ensembl chr 4:90,898,686...90,901,875
JBrowse link
G PTX3 pentraxin 3 IEA Ensembl GO_REF:0000107 NCBI chr13:97,273,594...97,279,570
Ensembl chr13:97,273,594...97,279,569
JBrowse link
negative regulation by host of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCL8 chemokine (C-C motif) ligand 8 IEA Ensembl GO_REF:0000107 NCBI chr12:40,740,468...40,741,970
Ensembl chr12:40,740,023...40,742,022
JBrowse link
G CCNK cyclin K IEA Ensembl GO_REF:0000107 NCBI chr 7:120,487,140...120,514,223
Ensembl chr 7:120,487,206...120,514,014
JBrowse link
G CEACAM1 CEA cell adhesion molecule 1 ISO (MGI:55926|PMID:6327825) MGI PMID:6327825 MGI:55926 NCBI chr 6:49,437,308...49,460,614 JBrowse link
G DDX3X DEAD-box helicase 3 X-linked IMP (PMID:24380861) AgBase PMID:24380861 NCBI chr  X:36,988,031...37,005,496
Ensembl chr  X:36,988,031...37,044,769
JBrowse link
G EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 ISO (MGI:5700304|PMID:16601681) UniProt PMID:16601681 MGI:5700304 NCBI chr 1:131,244,818...131,355,240
Ensembl chr 1:131,245,463...131,355,224
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase IEA Ensembl GO_REF:0000107 NCBI chr 1:5,698,508...6,731,132
Ensembl chr 1:5,465,511...6,730,881
JBrowse link
G VAPA VAMP associated protein A IEA Ensembl GO_REF:0000107 NCBI chr 6:98,212,335...98,254,272
Ensembl chr 6:98,207,580...98,254,288
JBrowse link
G VAPB VAMP associated protein B and C ISO (PMID:19515777) AgBase PMID:19515777 NCBI chr17:58,594,749...58,644,925
Ensembl chr17:58,594,749...58,644,918
JBrowse link
G ZBED1 zinc finger BED-type containing 1 IEA Ensembl GO_REF:0000107
G ZC3H12A zinc finger CCCH-type containing 12A IEA Ensembl GO_REF:0000107 NCBI chr 6:93,541,334...93,551,200
Ensembl chr 6:93,541,334...93,551,195
JBrowse link
negative regulation by host of viral glycoprotein metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APCS amyloid P component, serum IEA Ensembl GO_REF:0000107 NCBI chr 4:90,900,585...90,901,854
Ensembl chr 4:90,898,686...90,901,875
JBrowse link
G PTX3 pentraxin 3 IEA Ensembl GO_REF:0000107 NCBI chr13:97,273,594...97,279,570
Ensembl chr13:97,273,594...97,279,569
JBrowse link
negative regulation by host of viral process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APCS amyloid P component, serum IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:90,900,585...90,901,854
Ensembl chr 4:90,898,686...90,901,875
JBrowse link
G CEACAM1 CEA cell adhesion molecule 1 ISO (MGI:2148352|PMID:11483763)
(MGI:1098064|PMID:9343248)
(MGI:3848729|PMID:19358828)
MGI PMID:9343248, PMID:11483763, PMID:19358828 MGI:1098064, MGI:2148352, MGI:3848729 NCBI chr 6:49,437,308...49,460,614 JBrowse link
G CRP C-reactive protein, pentraxin-related IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:90,793,361...90,801,020
Ensembl chr 4:90,722,352...90,805,236
JBrowse link
G LTF lactotransferrin IEA Ensembl GO_REF:0000107 NCBI chr13:29,413,886...29,445,751
Ensembl chr13:29,413,886...29,445,737
JBrowse link
G PTX3 pentraxin 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:97,273,594...97,279,570
Ensembl chr13:97,273,594...97,279,569
JBrowse link
negative regulation by host of viral release from host cell term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VAPB VAMP associated protein B and C ISO (PMID:19515777) AgBase PMID:19515777 NCBI chr17:58,594,749...58,644,925
Ensembl chr17:58,594,749...58,644,918
JBrowse link
negative regulation by host of viral transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCL3L1 chemokine (C-C motif) ligand 3-like 1 ISS UniProt GO_REF:0000024 NCBI chr12:39,491,999...39,493,345
Ensembl chr12:39,491,885...39,493,370
JBrowse link
G CCL4 C-C motif chemokine ligand 4 ISO (PMID:10841574) UniProtKB PMID:10841574 NCBI chr12:39,479,190...39,480,511
Ensembl chr12:39,478,885...39,557,358
JBrowse link
G CCL5 C-C motif chemokine ligand 5 IEA Ensembl GO_REF:0000107 NCBI chr12:39,652,731...39,659,121
Ensembl chr12:39,648,598...39,659,118
JBrowse link
G HDAC1 histone deacetylase 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,412
JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:17005673) UniProtKB PMID:17005673 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G HMOX1 heme oxygenase 1 IMP (PMID:25086213) AgBase PMID:25086213
G INPP5K inositol polyphosphate-5-phosphatase K IEA Ensembl GO_REF:0000107 NCBI chr12:47,717,898...47,738,540
Ensembl chr12:47,717,907...47,738,477
JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit ISO (PMID:2833704) UniProtKB PMID:2833704 NCBI chr 6:153,686,425...153,687,635 JBrowse link
G LOC100621006 RE1-silencing transcription factor-like ISS UniProt GO_REF:0000024 NCBI chr 8:56,048,280...56,215,011
Ensembl chr 8:56,035,150...56,215,013
JBrowse link
G POU2F3 POU class 2 homeobox 3 IEA Ensembl GO_REF:0000107 NCBI chr 9:47,376,852...47,458,265
Ensembl chr 9:47,376,853...47,460,166
JBrowse link
G REST RE1 silencing transcription factor ISS UniProt GO_REF:0000024 NCBI chr 8:56,035,182...56,061,140
Ensembl chr 8:56,035,150...56,215,013
JBrowse link
G TARDBP TAR DNA binding protein IEA Ensembl GO_REF:0000107 NCBI chr 6:71,213,584...71,227,707
Ensembl chr 6:71,213,852...71,227,704
JBrowse link
G TFAP4 transcription factor AP-4 IEA Ensembl GO_REF:0000107 NCBI chr 3:38,043,735...38,060,820
Ensembl chr 3:38,048,128...38,060,819
JBrowse link
G ZNF639 zinc finger protein 639 IEA Ensembl GO_REF:0000107 NCBI chr13:117,370,496...117,384,046
Ensembl chr13:117,370,543...117,386,268
JBrowse link
neutrophil-mediated killing of bacterium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZU1 azurocidin 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:77,530,692...77,533,880
Ensembl chr 2:77,530,695...77,533,643
JBrowse link
neutrophil-mediated killing of fungus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELANE elastase, neutrophil expressed IEA Ensembl GO_REF:0000107 NCBI chr 2:77,513,769...77,516,118
Ensembl chr 2:77,509,344...77,516,027
JBrowse link
G NCF1 neutrophil cytosolic factor 1 ISO (MGI:4353632|PMID:11907569) MGI PMID:11907569 MGI:4353632 NCBI chr 3:11,820,367...11,834,394
Ensembl chr 3:11,820,285...11,839,426
JBrowse link
neutrophil-mediated killing of gram-negative bacterium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELANE elastase, neutrophil expressed IEA Ensembl GO_REF:0000107 NCBI chr 2:77,513,769...77,516,118
Ensembl chr 2:77,509,344...77,516,027
JBrowse link
G F2 coagulation factor II, thrombin IEA Ensembl GO_REF:0000107 NCBI chr 2:15,793,257...15,819,151
Ensembl chr 2:15,791,451...15,819,138
JBrowse link
G TREM1 triggering receptor expressed on myeloid cells 1 ISO (MGI:5471912|PMID:23241959) MGI PMID:23241959 MGI:5471912 NCBI chr 7:36,510,253...36,531,796
Ensembl chr 7:36,510,253...36,531,796
JBrowse link
neutrophil-mediated killing of gram-positive bacterium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100154047 cathepsin G ISO (MGI:4353632|PMID:11907569) MGI PMID:11907569 MGI:4353632 NCBI chr 7:74,761,602...74,772,950 JBrowse link
G NCF1 neutrophil cytosolic factor 1 ISO (MGI:4353632|PMID:11907569) MGI PMID:11907569 MGI:4353632 NCBI chr 3:11,820,367...11,834,394
Ensembl chr 3:11,820,285...11,839,426
JBrowse link
positive regulation by host of symbiont catalytic activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone IEA Ensembl GO_REF:0000107 NCBI chr11:25,905,442...25,960,665
Ensembl chr11:25,906,010...25,954,210
JBrowse link
positive regulation by host of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSPA8 heat shock protein family A (Hsp70) member 8 IEA Ensembl GO_REF:0000107 NCBI chr 9:49,982,278...49,986,760
Ensembl chr 9:49,982,284...49,990,508
JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:66,398,845...66,435,548
Ensembl chr 9:66,398,227...66,435,577
JBrowse link
G PPIB peptidylprolyl isomerase B IEA Ensembl GO_REF:0000107 NCBI chr 1:107,886,663...107,893,155
Ensembl chr 1:107,886,658...107,897,098
JBrowse link
G STOM stomatin IEA Ensembl GO_REF:0000107 NCBI chr 1:261,380,087...261,407,713
Ensembl chr 1:261,377,866...261,407,716
JBrowse link
G TBC1D20 TBC1 domain family member 20 IEA Ensembl GO_REF:0000107 NCBI chr17:34,760,379...34,778,301
Ensembl chr17:34,760,379...34,779,251
JBrowse link
G VAPA VAMP associated protein A IEA Ensembl GO_REF:0000107 NCBI chr 6:98,212,335...98,254,272
Ensembl chr 6:98,207,580...98,254,288
JBrowse link
G VAPB VAMP associated protein B and C ISO (PMID:19515777) AgBase PMID:19515777 NCBI chr17:58,594,749...58,644,925
Ensembl chr17:58,594,749...58,644,918
JBrowse link
G YTHDC2 YTH domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:118,003,402...118,092,176
Ensembl chr 2:117,871,336...118,104,508
JBrowse link
positive regulation by host of viral process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA2 annexin A2 IMP (PMID:25593157) AgBase PMID:25593157 NCBI chr 1:111,588,721...111,635,064
Ensembl chr 1:111,588,306...111,635,064
JBrowse link
G APOE apolipoprotein E IEA Ensembl GO_REF:0000107 NCBI chr 6:51,373,113...51,375,333
Ensembl chr 6:51,372,259...51,377,794
JBrowse link
G CAV2 caveolin 2 ISO (PMID:25556234) AgBase PMID:25556234 NCBI chr18:29,699,012...29,707,277
Ensembl chr18:29,699,020...29,707,277
JBrowse link
G CEACAM1 CEA cell adhesion molecule 1 ISO (MGI:2148352|PMID:11483763)
(MGI:1098064|PMID:9343248)
MGI PMID:9343248, PMID:11483763 MGI:1098064, MGI:2148352 NCBI chr 6:49,437,308...49,460,614 JBrowse link
G CFL1 cofilin 1 ISO (PMID:25556234) AgBase PMID:25556234 NCBI chr 2:6,471,558...6,475,019
Ensembl chr 2:6,469,254...6,475,035
JBrowse link
G CSF1R colony stimulating factor 1 receptor IEA Ensembl GO_REF:0000107 NCBI chr 2:151,102,138...151,130,311
Ensembl chr 2:151,102,138...151,147,634
JBrowse link
G IFNG interferon gamma ISO (MGI:4840165|PMID:20889566) ARUK-UCL PMID:20889566 MGI:4840165 NCBI chr 5:32,477,906...32,482,670
Ensembl chr 5:32,477,848...32,482,752
JBrowse link
G IGF2R insulin like growth factor 2 receptor IEA Ensembl GO_REF:0000107 NCBI chr 1:7,369,485...7,472,480
Ensembl chr 1:7,368,103...7,472,548
JBrowse link
G PC pyruvate carboxylase ISO (PMID:23861867) AgBase PMID:23861867 NCBI chr 2:5,566,608...5,587,797
Ensembl chr 2:5,518,430...5,587,797
JBrowse link
G PPIB peptidylprolyl isomerase B ISO (PMID:15989969) AgBase PMID:15989969 NCBI chr 1:107,886,663...107,893,155
Ensembl chr 1:107,886,658...107,897,098
JBrowse link
positive regulation by host of viral release from host cell term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAV2 caveolin 2 IEA Ensembl GO_REF:0000107 NCBI chr18:29,699,012...29,707,277
Ensembl chr18:29,699,020...29,707,277
JBrowse link
G LOC100738134 zinc finger protein 501 IEA Ensembl GO_REF:0000107 NCBI chr13:27,930,889...27,958,202
Ensembl chr13:27,930,928...27,944,388
JBrowse link
G PC pyruvate carboxylase IEA Ensembl GO_REF:0000107 NCBI chr 2:5,566,608...5,587,797
Ensembl chr 2:5,518,430...5,587,797
JBrowse link
G VAPA VAMP associated protein A IEA Ensembl GO_REF:0000107 NCBI chr 6:98,212,335...98,254,272
Ensembl chr 6:98,207,580...98,254,288
JBrowse link
G VAPB VAMP associated protein B and C ISO (PMID:19515777) AgBase PMID:19515777 NCBI chr17:58,594,749...58,644,925
Ensembl chr17:58,594,749...58,644,918
JBrowse link
positive regulation by host of viral transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD1 chromodomain helicase DNA binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:105,113,149...105,205,303
Ensembl chr 2:105,113,668...105,203,152
JBrowse link
G CTDP1 CTD phosphatase subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:145,769,763...145,811,673
Ensembl chr 1:145,769,768...145,811,678
JBrowse link
G EP300 E1A binding protein p300 IEA Ensembl GO_REF:0000107 NCBI chr 5:7,311,165...7,394,515
Ensembl chr 5:7,311,171...7,393,760
JBrowse link
G FKBP8 FKBP prolyl isomerase 8 IMP (PMID:26748656) AgBase PMID:26748656 NCBI chr 2:59,256,546...59,267,171
Ensembl chr 2:59,252,073...59,267,165
JBrowse link
G GTF2B general transcription factor IIB IEA Ensembl GO_REF:0000107 NCBI chr 4:127,522,802...127,559,605
Ensembl chr 4:127,522,524...127,571,378
JBrowse link
G HPN hepsin IEA Ensembl GO_REF:0000107 NCBI chr 6:44,608,076...44,628,044
Ensembl chr 6:44,608,071...44,628,049
JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit ISO (PMID:2833704) UniProtKB PMID:2833704 NCBI chr 6:153,686,425...153,687,635 JBrowse link
G LEF1 lymphoid enhancer binding factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:113,824,511...113,944,078
Ensembl chr 8:113,824,547...113,944,078
JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:66,398,845...66,435,548
Ensembl chr 9:66,398,227...66,435,577
JBrowse link
G RRP1B ribosomal RNA processing 1B IEA Ensembl GO_REF:0000107 NCBI chr13:206,629,176...206,653,374
Ensembl chr13:206,629,178...206,653,371
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 IEA Ensembl GO_REF:0000107 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,298
JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 ISO (PMID:16687403) BHF-UCL PMID:16687403 NCBI chr14:49,874,981...49,906,043
Ensembl chr14:49,874,984...49,906,048
JBrowse link
G SNW1 SNW domain containing 1 ISO (PMID:15905409)
(PMID:19818711)
UniProtKB PMID:15905409, PMID:19818711 NCBI chr 7:100,718,298...100,749,414
Ensembl chr 7:100,718,036...100,749,356
JBrowse link
G SP1 Sp1 transcription factor IEA Ensembl GO_REF:0000107 NCBI chr 5:18,588,763...18,633,177
Ensembl chr 5:18,588,758...18,630,089
JBrowse link
G TAF11 TATA-box binding protein associated factor 11 IEA Ensembl GO_REF:0000107 NCBI chr 7:30,799,992...30,811,771
Ensembl chr 7:30,799,965...30,811,768
JBrowse link
G TFAP4 transcription factor AP-4 IEA Ensembl GO_REF:0000107 NCBI chr 3:38,043,735...38,060,820
Ensembl chr 3:38,048,128...38,060,819
JBrowse link
G ZNF639 zinc finger protein 639 IEA Ensembl GO_REF:0000107 NCBI chr13:117,370,496...117,384,046
Ensembl chr13:117,370,543...117,386,268
JBrowse link
positive regulation of neutrophil mediated killing of fungus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARG1 arginase 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:32,006,035...32,028,983
Ensembl chr 1:32,006,038...32,028,986
JBrowse link
G POMC proopiomelanocortin ISO (PMID:10670585) UniProt PMID:10670585 NCBI chr 3:113,661,712...113,668,558 JBrowse link
positive regulation of neutrophil mediated killing of gram-negative bacterium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G F2RL1 F2R like trypsin receptor 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:85,732,082...85,747,552
Ensembl chr 2:85,732,189...85,750,858
JBrowse link
programmed cell death induced by symbiont term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G JAK2 Janus kinase 2 ISO (MGI:5009182|PMID:12426001) MGI PMID:12426001 MGI:5009182 NCBI chr 1:216,849,744...217,002,310
Ensembl chr 1:216,848,686...217,002,148
JBrowse link
regulation of neutrophil mediated killing of gram-negative bacterium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMCF-II alveolar macrophage-derived chemotactic factor-II ISO (MGI:4819434|PMID:20643340) MGI PMID:20643340 MGI:4819434 NCBI chr 8:70,008,225...70,010,360
Ensembl chr 8:70,008,162...70,010,358
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16548
    biological process involved in interspecies interaction between organisms 1589
      biological process involved in symbiotic interaction 373
        biological process involved in interaction with symbiont 96
          acquisition of nutrients from symbiont + 0
          detection of symbiont + 0
          killing by host of symbiont cells + 21
          lectin-induced modified bacterial internalization 0
          modulation by host of symbiont process + 68
          programmed cell death induced by symbiont + 1
          translocation of molecules into symbiont + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.