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ONTOLOGY REPORT - ANNOTATIONS


Term:pigment granule localization
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Accession:GO:0051875 term browser browse the term
Definition:Any process in which a pigment granule is transported to, and/or maintained in, a specific location within the cell.
Synonyms:exact_synonym: pigment granule localisation


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pigment granule localization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA ISO MGI:MGI:1856716|MGI:MGI:2155422 (MGI:MGI:3047015|PMID:14978221), (MGI:MGI:3512820|PMID:15572405), (MGI:MGI:3629265|PMID:14609561) RGD PMID:14609561, PMID:14978221, PMID:15572405 MGI:MGI:3047015, MGI:MGI:3512820, MGI:MGI:3629265 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Rab27a RAB27A, member RAS oncogene family ISO MGI:MGI:1856656 (MGI:MGI:3047015|PMID:14978221), (MGI:MGI:3512820|PMID:15572405) RGD PMID:14978221, PMID:15572405 MGI:MGI:3047015, MGI:MGI:3512820 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
establishment of melanosome localization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab17 RAB17, member RAS oncogene family ISO (MGI:MGI:5487521|PMID:21291502) RGD PMID:21291502 MGI:MGI:5487521 NCBI chr 9:98,118,907...98,131,883
Ensembl chr 9:98,118,908...98,131,883
JBrowse link
G Shroom2 shroom family member 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:23,478,869...23,649,424
Ensembl chr  X:23,478,871...23,649,466
JBrowse link
melanosome localization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 ISO (PMID:19717472) RGD PMID:19717472 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link
G Mlph melanophilin ISO MGI:MGI:1856674 (MGI:MGI:2177987|PMID:11887186), (MGI:MGI:3028456|PMID:14730011), (MGI:MGI:3614727|PMID:11886590) RGD PMID:11886590, PMID:11887186, PMID:14730011 MGI:MGI:2177987, MGI:MGI:3028456, MGI:MGI:3614727 NCBI chr 9:98,072,965...98,108,429
Ensembl chr 9:98,073,038...98,108,433
JBrowse link
G Mreg melanoregulin ISO (MGI:MGI:5447858|PMID:22940130) RGD PMID:22940130 MGI:MGI:5447858 NCBI chr 9:79,490,058...79,559,768
Ensembl chr 9:79,490,050...79,545,024
JBrowse link
G Myo5a myosin VA ISO MGI:MGI:1856004 (MGI:MGI:1930900|PMID:11266470), (MGI:MGI:3028456|PMID:14730011), (MGI:MGI:85369|PMID:8962090) RGD PMID:8962090, PMID:11266470, PMID:14730011 MGI:MGI:1930900, MGI:MGI:3028456, MGI:MGI:85369 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Rab27a RAB27A, member RAS oncogene family ISO MGI:MGI:1856656 (MGI:MGI:1930900|PMID:11266470)
(PMID:15357836)
RGD PMID:11266470, PMID:15357836 MGI:MGI:1930900 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes ISO (PMID:15790593) RGD PMID:15790593 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated ISO (PMID:15790593) RGD PMID:15790593 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953
JBrowse link
melanosome transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein ISO MGI:MGI:1855937 (MGI:MGI:1202196|PMID:9548375) RGD PMID:9548375 MGI:MGI:1202196 NCBI chr 3:150,492,010...150,579,870
Ensembl chr 3:150,574,473...150,579,870
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:80,414,766...80,417,385
Ensembl chr 1:80,415,686...80,416,273
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 ISO
ISS
(PMID:17182842)
GO_REF:0000024
RGD
UniProt
PMID:17182842 GO_REF:0000024 NCBI chr 3:114,869,478...114,880,218
Ensembl chr 3:114,869,459...114,881,590
JBrowse link
G Dctn1 dynactin subunit 1 ISO
IEA
(MGI:MGI:5492030|PMID:22275436)
GO_REF:0000107
RGD
Ensembl
PMID:22275436 GO_REF:0000107, MGI:MGI:5492030 NCBI chr 4:114,876,770...114,896,567
Ensembl chr 4:114,876,770...114,896,573
JBrowse link
G Dctn2 dynactin subunit 2 ISO
IEA
(MGI:MGI:5492030|PMID:22275436)
GO_REF:0000107
RGD
Ensembl
PMID:22275436 GO_REF:0000107, MGI:MGI:5492030 NCBI chr 7:70,555,953...70,571,433
Ensembl chr 7:70,556,019...70,572,614
JBrowse link
G Gpr143 G protein-coupled receptor 143 ISO (PMID:19717472) RGD PMID:19717472 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IDA positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Mreg melanoregulin ISO
IBA
(MGI:MGI:5492030|PMID:22275436)
PMID:21873635
RGD PMID:22275436, PMID:21873635 MGI:MGI:5492030, RGD:13792537 NCBI chr 9:79,490,058...79,559,768
Ensembl chr 9:79,490,050...79,545,024
JBrowse link
G Myo5a myosin VA ISO
IEA
MGI:MGI:1856004|MGI:MGI:1858077 (MGI:MGI:1202196|PMID:9548375), (MGI:MGI:3653524|PMID:11266473), (MGI:MGI:5569175|PMID:24721909), (MGI:MGI:87417|PMID:9133672)
GO_REF:0000107
RGD
Ensembl
PMID:9133672, PMID:9548375, PMID:11266473, PMID:24721909 GO_REF:0000107, MGI:MGI:1202196, MGI:MGI:3653524, MGI:MGI:5569175, MGI:MGI:87417 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Rab11a RAB11a, member RAS oncogene family ISO
IBA
ISS
(MGI:MGI:5487521|PMID:21291502)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21291502, PMID:21873635 GO_REF:0000024, MGI:MGI:5487521, RGD:13792537 NCBI chr 8:70,192,975...70,215,719
Ensembl chr 8:70,192,975...70,215,719
JBrowse link
G Rab11b RAB11B, member RAS oncogene family ISO
ISS
(MGI:MGI:5487521|PMID:21291502)
GO_REF:0000024
RGD
UniProt
PMID:21291502 GO_REF:0000024, MGI:MGI:5487521 NCBI chr 7:18,598,991...18,612,132
Ensembl chr 7:18,598,880...18,612,147
JBrowse link
G Rab17 RAB17, member RAS oncogene family ISO (MGI:MGI:5487521|PMID:21291502) RGD PMID:21291502 MGI:MGI:5487521 NCBI chr 9:98,118,907...98,131,883
Ensembl chr 9:98,118,908...98,131,883
JBrowse link
G Rab1a RAB1A, member RAS oncogene family ISO (MGI:MGI:5526918|PMID:22854043) RGD PMID:22854043 MGI:MGI:5526918 NCBI chr14:104,475,082...104,500,176
Ensembl chr14:104,475,082...104,501,020
JBrowse link
G Rab27a RAB27A, member RAS oncogene family ISO
IBA
MGI:MGI:1856656 (MGI:MGI:3653524|PMID:11266473)
PMID:21873635
RGD PMID:11266473, PMID:21873635 MGI:MGI:3653524, RGD:13792537 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Rab27b RAB27B, member RAS oncogene family IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:68,486,006...68,644,595
Ensembl chr18:68,488,942...68,551,558
JBrowse link
pigment granule transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA ISO MGI:MGI:1856716|MGI:MGI:2155422 (MGI:MGI:1267003|PMID:9620764), (MGI:MGI:3512820|PMID:15572405) RGD PMID:9620764, PMID:15572405 MGI:MGI:1267003, MGI:MGI:3512820 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Rab27a RAB27A, member RAS oncogene family ISO MGI:MGI:1856656 (MGI:MGI:3512820|PMID:15572405) RGD PMID:15572405 MGI:MGI:3512820 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
positive regulation of melanosome transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh3 cadherin 3 ISO (PMID:23334344) RGD PMID:23334344 NCBI chr19:38,668,957...38,719,801
Ensembl chr19:38,669,230...38,719,677
JBrowse link
regulation of melanosome transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 ISO (MGI:MGI:3813974|PMID:18697795) RGD PMID:18697795 MGI:MGI:3813974 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cellular pigmentation 43
        pigment granule localization 22
          establishment of pigment granule localization + 19
          maintenance of pigment granule location 0
          melanosome localization + 21
          pigment granule transport + 18
Path 2
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cellular localization 2966
        organelle localization 573
          vesicle localization 179
            pigment granule localization 22
              establishment of pigment granule localization + 19
              maintenance of pigment granule location 0
              melanosome localization + 21
              pigment granule transport + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.