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ONTOLOGY REPORT - ANNOTATIONS


Term:muscle cell development
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Accession:GO:0055001 term browser browse the term
Definition:The process whose specific outcome is the progression of a muscle cell over time, from its formation to the mature structure. Muscle cell development does not include the steps involved in committing an unspecified cell to the muscle cell fate.


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muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacna1s calcium voltage-gated channel subunit alpha1 S JBrowse link 13 52,889,570 52,964,558 RGD:1624291
G Kdm1a lysine demethylase 1A JBrowse link 5 154,909,003 154,965,171 RGD:1624291
G Megf10 multiple EGF-like domains 10 JBrowse link 18 52,215,652 52,366,212 RGD:1624291
RGD:1600115
G Nfatc3 nuclear factor of activated T-cells 3 JBrowse link 19 38,039,542 38,114,003 RGD:1624291
G Nfatc4 nuclear factor of activated T-cells 4 JBrowse link 15 34,493,163 34,502,238 RGD:1624291
RGD:1600115
atrial cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fhl2 four and a half LIM domains 2 JBrowse link 9 49,920,611 49,994,906 RGD:1624291
RGD:1600115
G Nkx2-6 NK2 homeobox 6 JBrowse link 15 51,034,620 51,038,715 RGD:1624291
atrioventricular node cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Maml1 mastermind-like transcriptional coactivator 1 JBrowse link 10 35,765,196 35,801,375 RGD:1624291
G Nkx2-5 NK2 homeobox 5 JBrowse link 10 16,635,989 16,638,758 RGD:1624291
RGD:1600115
cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actn2 actinin alpha 2 JBrowse link 17 66,304,530 66,397,647 RGD:1624291
RGD:1600115
G Alpk2 alpha-kinase 2 JBrowse link 18 60,960,009 61,072,116 RGD:1600115
RGD:1624291
G Alpk3 alpha-kinase 3 JBrowse link 1 142,882,997 142,931,940 RGD:1624291
RGD:13792537
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1624291
G Cav3 caveolin 3 JBrowse link 4 144,382,945 144,398,919 RGD:1624291
RGD:1600115
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:1624291
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1624291
RGD:1600115
G LOC100911101 leucine-rich repeat-containing protein 10-like JBrowse link 7 60,099,105 60,100,385 RGD:13792537
G Lrrc10 leucine-rich repeat-containing 10 JBrowse link 7 60,087,361 60,088,758 RGD:1624291
RGD:13792537
G Met MET proto-oncogene, receptor tyrosine kinase JBrowse link 4 44,747,467 44,854,628 RGD:1624291
G Mir208a microRNA 208a JBrowse link 15 33,613,451 33,613,533 RGD:1624291
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:1624291
RGD:1600115
G Sgcb sarcoglycan, beta JBrowse link 14 37,113,194 37,128,623 RGD:1624291
RGD:1600115
G Slc8a1 solute carrier family 8 member A1 JBrowse link 6 4,244,076 4,564,262 RGD:1624291
G Speg striated muscle enriched protein kinase JBrowse link 9 82,571,333 82,628,684 RGD:1624291
G Xirp1 xin actin-binding repeat containing 1 JBrowse link 8 128,694,809 128,712,092 RGD:1624291
cardiac muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cxadr CXADR, Ig-like cell adhesion molecule JBrowse link 11 16,826,269 16,873,564 RGD:1624291
RGD:1600115
G Myh11 myosin heavy chain 11 JBrowse link 10 764,421 859,184 RGD:1600115
RGD:1624291
G Myh6 myosin heavy chain 6 JBrowse link 15 33,605,653 33,629,730 RGD:1600115
RGD:1624291
G Myo18b myosin XVIIIb JBrowse link 12 49,761,100 49,979,745 RGD:1624291
RGD:1600115
G Myom1 myomesin 1 JBrowse link 9 119,353,840 119,469,196 RGD:13792537
G Myom2 myomesin 2 JBrowse link 16 79,587,136 79,672,871 RGD:13792537
G Myom3 myomesin 3 JBrowse link 5 154,109,293 154,159,943 RGD:13792537
G Sgcd sarcoglycan, delta JBrowse link 10 32,062,946 32,471,454 RGD:1624291
RGD:1600115
G Tcap titin-cap JBrowse link 10 86,337,705 86,338,414 RGD:1624291
G Ttn titin JBrowse link 3 63,565,160 63,837,815 RGD:1624291
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1624291
G Zmpste24 zinc metallopeptidase STE24 JBrowse link 5 139,982,404 140,015,541 RGD:1624291
RGD:1600115
cardiac muscle thin filament assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Neb nebulin JBrowse link 3 37,658,081 37,855,843 RGD:13792537
G Nebl nebulette JBrowse link 17 84,141,014 84,247,038 RGD:1600115
RGD:13792537
RGD:1624291
G Nrap nebulin-related anchoring protein JBrowse link 1 277,104,519 277,181,397 RGD:13792537
cardiac myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actc1 actin, alpha, cardiac muscle 1 JBrowse link 3 105,507,403 105,512,939 RGD:1624291
RGD:1600115
G Csrp3 cysteine and glycine rich protein 3 JBrowse link 1 104,147,205 104,166,389 RGD:1624291
RGD:1600115
G Fhod3 formin homology 2 domain containing 3 JBrowse link 18 16,650,786 17,332,209 RGD:1624291
RGD:1600115
G Myh10 myosin heavy chain 10 JBrowse link 10 55,274,910 55,406,738 RGD:1624291
RGD:1600115
G Myl2 myosin light chain 2 JBrowse link 12 39,951,863 39,959,065 RGD:1624291
RGD:1600115
G Mylk3 myosin light chain kinase 3 JBrowse link 19 27,388,163 27,442,451 RGD:8554371
RGD:13792537
G Myom1 myomesin 1 JBrowse link 9 119,353,840 119,469,196 RGD:13792537
G Myom2 myomesin 2 JBrowse link 16 79,587,136 79,672,871 RGD:13792537
G Myom3 myomesin 3 JBrowse link 5 154,109,293 154,159,943 RGD:13792537
G Pdgfra platelet derived growth factor receptor alpha JBrowse link 14 35,527,926 35,581,130 RGD:1600115
RGD:1624291
G Pdgfrb platelet derived growth factor receptor beta JBrowse link 18 56,364,586 56,406,381 RGD:1624291
RGD:1600115
G Srf serum response factor JBrowse link 9 16,737,637 16,747,226 RGD:1624291
RGD:1600115
G Tcap titin-cap JBrowse link 10 86,337,705 86,338,414 RGD:1624291
G Ttn titin JBrowse link 3 63,565,160 63,837,815 RGD:1624291
cardiac vascular smooth muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 JBrowse link 1 29,191,170 29,201,257 RGD:1624291
RGD:1600115
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:1624291
RGD:1600115
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1624291
cell growth involved in cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adra1a adrenoceptor alpha 1A JBrowse link 15 43,296,997 43,398,314 RGD:1624291
RGD:1600115
G Adra1b adrenoceptor alpha 1B JBrowse link 10 29,392,762 29,450,644 RGD:1624291
G Agt angiotensinogen JBrowse link 19 57,321,594 57,333,460 RGD:5129173
G Agtr2 angiotensin II receptor, type 2 JBrowse link X 119,389,480 119,393,845 RGD:6903878
G Akap13 A-kinase anchoring protein 13 JBrowse link 1 137,089,558 137,315,272 RGD:2312638
G Camk2d calcium/calmodulin-dependent protein kinase II delta JBrowse link 2 230,900,907 231,132,207 RGD:6907064
G Gata4 GATA binding protein 4 JBrowse link 15 46,386,703 46,458,679 RGD:5131529
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 11 65,060,884 65,208,842 RGD:13792737
G Map2k4 mitogen activated protein kinase kinase 4 JBrowse link 10 52,196,121 52,301,887 RGD:7495831
G Myl2 myosin light chain 2 JBrowse link 12 39,951,863 39,959,065 RGD:1580138
G Myocd myocardin JBrowse link 10 51,682,053 51,781,458 RGD:5132877
G Nppa natriuretic peptide A JBrowse link 5 164,808,407 164,809,716 RGD:1580138
G Nppb natriuretic peptide B JBrowse link 5 164,796,176 164,797,538 RGD:1580138
G Pdlim5 PDZ and LIM domain 5 JBrowse link 2 247,815,214 247,989,198 RGD:10054083
G Prkg1 protein kinase cGMP-dependent 1 JBrowse link 1 248,982,039 250,300,952 RGD:7775063
G Sorbs2 sorbin and SH3 domain containing 2 JBrowse link 16 49,626,205 49,820,223 RGD:10054083
muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afg3l2 AFG3 like matrix AAA peptidase subunit 2 JBrowse link 18 63,141,418 63,185,510 RGD:1624291
RGD:1600115
G Cacna2d2 calcium voltage-gated channel auxiliary subunit alpha2delta 2 JBrowse link 8 116,154,661 116,285,643 RGD:1624291
RGD:1600115
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 JBrowse link 3 37,950,846 38,211,478 RGD:1624291
RGD:1600115
G Capzb capping actin protein of muscle Z-line subunit beta JBrowse link 5 157,642,742 157,742,487 RGD:1624291
G Chrnb1 cholinergic receptor nicotinic beta 1 subunit JBrowse link 10 56,390,671 56,403,255 RGD:1624291
RGD:1600115
G Comp cartilage oligomeric matrix protein JBrowse link 16 20,798,437 20,807,070 RGD:1624291
RGD:1600115
G Dmd dystrophin JBrowse link X 51,149,358 53,519,271 RGD:1624291
RGD:1600115
G Dysf dysferlin JBrowse link 4 115,700,942 115,901,873 RGD:1624291
RGD:1600115
G Flnc filamin C JBrowse link 4 56,710,934 56,738,779 RGD:1624291
RGD:1600115
G Lox lysyl oxidase JBrowse link 18 47,500,320 47,577,819 RGD:1624291
RGD:1600115
G Mir208a microRNA 208a JBrowse link 15 33,613,451 33,613,533 RGD:1624291
G Mir208b microRNA 208b JBrowse link 15 33,639,510 33,639,621 RGD:1624291
G Mir499a microRNA 499a JBrowse link 3 151,138,862 151,138,926 RGD:1624291
G Myl2 myosin light chain 2 JBrowse link 12 39,951,863 39,959,065 RGD:1624291
RGD:1600115
G Myof myoferlin JBrowse link 1 256,585,410 256,734,727 RGD:1624291
RGD:1600115
G Neb nebulin JBrowse link 3 37,658,081 37,855,843 RGD:13792537
G Nebl nebulette JBrowse link 17 84,141,014 84,247,038 RGD:13792537
G Nrap nebulin-related anchoring protein JBrowse link 1 277,104,519 277,181,397 RGD:13792537
G Pmp22 peripheral myelin protein 22 JBrowse link 10 49,538,588 49,568,583 RGD:1624291
G Ptcd2 pentatricopeptide repeat domain 2 JBrowse link 2 29,570,581 29,598,328 RGD:1624291
RGD:1600115
G Sgcb sarcoglycan, beta JBrowse link 14 37,113,194 37,128,623 RGD:1624291
RGD:1600115
G Slc8a1 solute carrier family 8 member A1 JBrowse link 6 4,244,076 4,564,262 RGD:1624291
G Tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 JBrowse link 7 40,171,957 40,217,056 RGD:1624291
G Uchl1 ubiquitin C-terminal hydrolase L1 JBrowse link 14 43,133,224 43,143,942 RGD:1624291
RGD:1600115
G Wfikkn1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 JBrowse link 10 15,243,429 15,245,757 RGD:1624291
RGD:1600115
G Wfikkn2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 JBrowse link 10 81,936,156 81,943,142 RGD:1624291
RGD:1600115
myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Capn3 calpain 3 JBrowse link 3 112,227,486 112,278,408 RGD:1624291
RGD:1600115
G Klhl41 kelch-like family member 41 JBrowse link 3 55,910,177 55,923,303 RGD:1624291
RGD:1600115
G Lmod1 leiomodin 1 JBrowse link 13 52,147,099 52,189,835 RGD:13792537
G Lmod2 leiomodin 2 JBrowse link 4 51,553,439 51,561,135 RGD:13792537
G Lmod3 leiomodin 3 JBrowse link 4 129,604,378 129,619,136 RGD:13792537
G Myh10 myosin heavy chain 10 JBrowse link 10 55,274,910 55,406,738 RGD:1624291
G Myh6 myosin heavy chain 6 JBrowse link 15 33,605,653 33,629,730 RGD:1624291
G Neurl2 neuralized E3 ubiquitin protein ligase 2 JBrowse link 3 161,296,303 161,299,024 RGD:1624291
G Pgm5 phosphoglucomutase 5 JBrowse link 1 242,582,591 242,765,837 RGD:13792537
G Tmod1 tropomodulin 1 JBrowse link 5 61,635,244 61,712,052 RGD:1624291
RGD:13792537
RGD:1600115
G Tmod2 tropomodulin 2 JBrowse link 8 82,505,947 82,547,450 RGD:13792537
G Tmod3 tropomodulin 3 JBrowse link 8 82,432,165 82,492,243 RGD:13792537
G Tmod4 tropomodulin 4 JBrowse link 2 196,294,990 196,299,896 RGD:13792537
myotube cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dmd dystrophin JBrowse link X 51,149,358 53,519,271 RGD:1624291
RGD:1600115
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:1624291
RGD:1600115
G Myod1 myogenic differentiation 1 JBrowse link 1 102,396,538 102,399,248 RGD:1624291
G Nfatc2 nuclear factor of activated T-cells 2 JBrowse link 3 165,241,750 165,374,644 RGD:1624291
RGD:1600115
G Nfatc3 nuclear factor of activated T-cells 3 JBrowse link 19 38,039,542 38,114,003 RGD:1624291
G Smyd3 SET and MYND domain containing 3 JBrowse link 13 97,330,120 97,807,813 RGD:1624291
negative regulation of cardiac myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:1624291
RGD:1600115
negative regulation of cell growth involved in cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cav3 caveolin 3 JBrowse link 4 144,382,945 144,398,919 RGD:6784534
G Ctdp1 CTD phosphatase subunit 1 JBrowse link 18 76,922,913 76,985,095 RGD:9686371
G Foxp1 forkhead box P1 JBrowse link 4 131,362,178 131,963,466 RGD:11561912
G G6pd glucose-6-phosphate dehydrogenase JBrowse link X 156,274,800 156,293,935 RGD:10449133
G Gsk3a glycogen synthase kinase 3 alpha JBrowse link 1 82,097,244 82,108,238 RGD:1624291
RGD:1600115
G Mir451a microRNA 451a JBrowse link 10 65,291,204 65,291,275 RGD:11558015
G Pak1 p21 (RAC1) activated kinase 1 JBrowse link 1 162,768,156 162,883,356 RGD:11533929
G Pi16 peptidase inhibitor 16 JBrowse link 20 6,923,176 6,932,786 RGD:1624291
RGD:1600115
G Ppara peroxisome proliferator activated receptor alpha JBrowse link 7 126,618,872 126,687,282 RGD:5687133
G Rgs2 regulator of G-protein signaling 2 JBrowse link 13 60,846,458 60,849,061 RGD:13524577
G Rgs4 regulator of G-protein signaling 4 JBrowse link 13 88,054,817 88,061,108 RGD:7207376
G Tomm70 translocase of outer mitochondrial membrane 70 JBrowse link 11 45,477,053 45,511,409 RGD:13464131
G Yy1 YY1 transcription factor JBrowse link 6 132,702,443 132,726,848 RGD:9588273
negative regulation of sarcomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cav3 caveolin 3 JBrowse link 4 144,382,945 144,398,919 RGD:1624291
RGD:1600115
G Mfn2 mitofusin 2 JBrowse link 5 164,684,244 164,715,414 RGD:13204833
neuromuscular junction development, skeletal muscle fiber term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pmp22 peripheral myelin protein 22 JBrowse link 10 49,538,588 49,568,583 RGD:1624291
positive regulation of cardiac muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link 15 20,776,060 20,791,013 RGD:1624291
RGD:1600115
positive regulation of cell growth involved in cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adrb1 adrenoceptor beta 1 JBrowse link 1 277,537,585 277,538,985 RGD:5129139
G Akap6 A-kinase anchoring protein 6 JBrowse link 6 73,553,111 73,991,992 RGD:6902940
RGD:2312613
G Ccn4 cellular communication network factor 4 JBrowse link 7 107,695,227 107,723,759 RGD:5129173
G Ddx39b DExD-box helicase 39B JBrowse link 20 4,806,103 4,818,600 RGD:10401141
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:1624291
RGD:1600115
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:2312280
G Fdps farnesyl diphosphate synthase JBrowse link 2 188,403,595 188,413,219 RGD:2316294
G Hamp hepcidin antimicrobial peptide JBrowse link 1 89,368,021 89,369,960 RGD:11041632
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:1624291
RGD:1600115
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:10040977
RGD:10040978
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 JBrowse link 18 31,728,373 32,704,022 RGD:7174736
G Parp2 poly (ADP-ribose) polymerase 2 JBrowse link 15 27,739,416 27,749,650 RGD:13514044
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 JBrowse link 8 21,669,236 21,680,615 RGD:8693424
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:13514043
G Slc25a4 solute carrier family 25 member 4 JBrowse link 16 49,266,903 49,270,698 RGD:9681466
G Trip10 thyroid hormone receptor interactor 10 JBrowse link 9 9,689,214 9,702,353 RGD:11535145
positive regulation of sarcomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp10 bone morphogenetic protein 10 JBrowse link 4 119,224,906 119,230,534 RGD:1624291
RGD:1600115
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:1624291
RGD:1600115
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:2312280
G Mylk3 myosin light chain kinase 3 JBrowse link 19 27,388,163 27,442,451 RGD:8554371
G Prox1 prospero homeobox 1 JBrowse link 13 108,382,536 108,444,107 RGD:1624291
RGD:1600115
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actn3 actinin alpha 3 JBrowse link 1 220,120,532 220,136,460 RGD:1624291
RGD:1600115
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:1624291
RGD:1600115
G Lmod3 leiomodin 3 JBrowse link 4 129,604,378 129,619,136 RGD:1624291
RGD:1600115
G Myf5 myogenic factor 5 JBrowse link 7 49,729,533 49,732,974 RGD:13792537
G Myf6 myogenic factor 6 JBrowse link 7 49,739,643 49,741,490 RGD:13792537
G Myod1 myogenic differentiation 1 JBrowse link 1 102,396,538 102,399,248 RGD:13792537
G Myog myogenin JBrowse link 13 51,126,459 51,129,048 RGD:1624291
RGD:13792537
RGD:1600115
G Shox2 short stature homeobox 2 JBrowse link 2 164,118,175 164,126,783 RGD:1624291
regulation of cell growth involved in cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col14a1 collagen type XIV alpha 1 chain JBrowse link 7 95,054,877 95,274,073 RGD:1624291
regulation of sarcomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akap13 A-kinase anchoring protein 13 JBrowse link 1 137,089,558 137,315,272 RGD:1624291
RGD:1600115
G Ankrd23 ankyrin repeat domain 23 JBrowse link 9 43,110,980 43,117,585 RGD:1624291
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:1624291
G Mef2c myocyte enhancer factor 2C JBrowse link 2 11,658,534 11,822,788 RGD:1624291
RGD:1600115
regulation of skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxo22 F-box protein 22 JBrowse link 8 59,770,032 59,786,061 RGD:1624291
RGD:1600115
G Hdac4 histone deacetylase 4 JBrowse link 9 99,052,945 99,299,715 RGD:1624291
RGD:1600115
G Hdac5 histone deacetylase 5 JBrowse link 10 90,140,183 90,169,853 RGD:1624291
G Hdac9 histone deacetylase 9 JBrowse link 6 53,487,367 54,358,694 RGD:1624291
G Naca nascent polypeptide associated complex subunit alpha JBrowse link 7 2,458,283 2,470,674 RGD:1624291
sarcomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actg1 actin, gamma 1 JBrowse link 10 109,518,429 109,521,288 RGD:1624291
G Actn1 actinin, alpha 1 JBrowse link 6 103,376,557 103,470,497 RGD:1600115
G Actn2 actinin alpha 2 JBrowse link 17 66,304,530 66,397,647 RGD:1624291
RGD:1600115
G Bmp10 bone morphogenetic protein 10 JBrowse link 4 119,224,906 119,230,534 RGD:2302083
G Capn3 calpain 3 JBrowse link 3 112,227,486 112,278,408 RGD:1624291
RGD:1600115
G Capn9 calpain 9 JBrowse link 19 57,341,938 57,378,901 RGD:1600115
G Casq1 calsequestrin 1 JBrowse link 13 90,592,676 90,602,365 RGD:1624291
RGD:1600115
G Casq2 calsequestrin 2 JBrowse link 2 204,512,361 204,568,643 RGD:1600115
RGD:1624291
G Cfl2 cofilin 2 JBrowse link 6 75,759,140 75,763,185 RGD:1624291
RGD:1600115
G Csrp1 cysteine and glycine-rich protein 1 JBrowse link 13 52,553,843 52,575,054 RGD:13792537
G Csrp3 cysteine and glycine rich protein 3 JBrowse link 1 104,147,205 104,166,389 RGD:13792537
G Fhod3 formin homology 2 domain containing 3 JBrowse link 18 16,650,786 17,332,209 RGD:1624291
RGD:8554207
G Foxp1 forkhead box P1 JBrowse link 4 131,362,178 131,963,466 RGD:1600115
RGD:1624291
G Itgb1 integrin subunit beta 1 JBrowse link 19 61,677,512 61,725,537 RGD:1624291
RGD:1600115
G Klhl41 kelch-like family member 41 JBrowse link 3 55,910,177 55,923,303 RGD:1600115
G Krt19 keratin 19 JBrowse link 10 88,055,843 88,060,560 RGD:1624291
RGD:1600115
G Krt8 keratin 8 JBrowse link 7 143,596,511 143,603,745 RGD:1600063
G Ldb3 LIM domain binding 3 JBrowse link 16 10,878,348 10,943,016 RGD:1624291
RGD:1600115
G Lmod2 leiomodin 2 JBrowse link 4 51,553,439 51,561,135 RGD:11344939
RGD:1624291
G Mybpc3 myosin binding protein C, cardiac JBrowse link 3 79,940,509 79,958,731 RGD:1624291
G Myh6 myosin heavy chain 6 JBrowse link 15 33,605,653 33,629,730 RGD:1624291
RGD:1600115
G Mylk3 myosin light chain kinase 3 JBrowse link 19 27,388,163 27,442,451 RGD:8554765
RGD:13792537
RGD:1624291
G Myom1 myomesin 1 JBrowse link 9 119,353,840 119,469,196 RGD:13792537
G Myom2 myomesin 2 JBrowse link 16 79,587,136 79,672,871 RGD:13792537
G Myom3 myomesin 3 JBrowse link 5 154,109,293 154,159,943 RGD:13792537
G Myoz1 myozenin 1 JBrowse link 15 4,077,066 4,084,306 RGD:1600115
RGD:1624291
G Myoz2 myozenin 2 JBrowse link 2 227,180,887 227,207,629 RGD:1600115
RGD:1624291
G Mypn myopalladin JBrowse link 20 26,988,820 27,074,106 RGD:1624291
RGD:1600115
G Neurl2 neuralized E3 ubiquitin protein ligase 2 JBrowse link 3 161,296,303 161,299,024 RGD:1624291
G Nkx2-5 NK2 homeobox 5 JBrowse link 10 16,635,989 16,638,758 RGD:1600115
RGD:1624291
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha JBrowse link 10 97,940,705 97,959,199 RGD:1624291
RGD:1600115
G Six4 SIX homeobox 4 JBrowse link 6 95,984,868 95,999,709 RGD:1624291
RGD:1600115
G Srf serum response factor JBrowse link 9 16,737,637 16,747,226 RGD:1624291
RGD:1600115
G Synpo2l synaptopodin 2-like JBrowse link 15 4,064,706 4,074,151 RGD:1624291
G Tcap titin-cap JBrowse link 10 86,337,705 86,338,414 RGD:1624291
G Tnnt1 troponin T1, slow skeletal type JBrowse link 1 72,889,270 72,899,629 RGD:13792537
G Tnnt2 troponin T2, cardiac type JBrowse link 13 52,662,974 52,680,992 RGD:1624291
RGD:13792537
G Tnnt3 troponin T3, fast skeletal type JBrowse link 1 215,666,628 215,683,628 RGD:13792537
G Tpm1 tropomyosin 1 JBrowse link 8 72,814,737 72,841,496 RGD:1624291
G Ttn titin JBrowse link 3 63,565,160 63,837,815 RGD:634444
RGD:1624291
G Wdr1 WD repeat domain 1 JBrowse link 14 76,990,014 77,023,739 RGD:1624291
RGD:13792537
G Xirp1 xin actin-binding repeat containing 1 JBrowse link 8 128,694,809 128,712,092 RGD:1624291
sarcomerogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mylk3 myosin light chain kinase 3 JBrowse link 19 27,388,163 27,442,451 RGD:8554371
G Tcap titin-cap JBrowse link 10 86,337,705 86,338,414 RGD:1624291
G Ttn titin JBrowse link 3 63,565,160 63,837,815 RGD:1624291
sinoatrial node cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bves blood vessel epicardial substance JBrowse link 20 50,439,885 50,474,678 RGD:1624291
G Popdc2 popeye domain containing 2 JBrowse link 11 64,915,041 64,954,704 RGD:1624291
G Tbx3 T-box transcription factor 3 JBrowse link 12 42,479,518 42,494,588 RGD:1624291
RGD:1600115
skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acta1 actin, alpha 1, skeletal muscle JBrowse link 19 56,674,072 56,677,084 RGD:1624291
RGD:1600115
G Actn1 actinin, alpha 1 JBrowse link 6 103,376,557 103,470,497 RGD:1600115
G Bin3 bridging integrator 3 JBrowse link 15 51,799,339 51,818,697 RGD:1624291
RGD:1600115
G Cacna1s calcium voltage-gated channel subunit alpha1 S JBrowse link 13 52,889,570 52,964,558 RGD:1624291
G Cav2 caveolin 2 JBrowse link 4 44,573,264 44,580,640 RGD:1624291
RGD:1600115
G Dner delta/notch-like EGF repeat containing JBrowse link 9 91,965,866 92,291,172 RGD:1624291
RGD:1600115
G Gpx1 glutathione peroxidase 1 JBrowse link 8 117,117,430 117,118,528 RGD:1624291
RGD:1600115
G Homer1 homer scaffold protein 1 JBrowse link 2 22,909,550 23,012,303 RGD:1624291
RGD:1600115
G Kel Kell metallo-endopeptidase (Kell blood group) JBrowse link 4 70,979,504 70,996,920 RGD:1624291
RGD:1600115
G Klhl40 kelch-like family member 40 JBrowse link 8 130,416,265 130,421,871 RGD:1624291
RGD:13792537
G Klhl41 kelch-like family member 41 JBrowse link 3 55,910,177 55,923,303 RGD:1600115
G Lmod3 leiomodin 3 JBrowse link 4 129,604,378 129,619,136 RGD:1624291
RGD:1600115
G Myod1 myogenic differentiation 1 JBrowse link 1 102,396,538 102,399,248 RGD:1624291
RGD:1600115
G Myog myogenin JBrowse link 13 51,126,459 51,129,048 RGD:1624291
G Myorg myogenesis regulating glycosidase JBrowse link 5 57,873,404 57,882,008 RGD:1624291
RGD:13792537
G Nfatc3 nuclear factor of activated T-cells 3 JBrowse link 19 38,039,542 38,114,003 RGD:1624291
G P2rx2 purinergic receptor P2X 2 JBrowse link 12 52,397,666 52,401,005 RGD:1624291
RGD:1600115
G Ppp3ca protein phosphatase 3 catalytic subunit alpha JBrowse link 2 241,909,332 242,186,861 RGD:1624291
RGD:1600115
G Rcan1 regulator of calcineurin 1 JBrowse link 11 32,539,689 32,620,274 RGD:1624291
G Ripor2 RHO family interacting cell polarization regulator 2 JBrowse link 17 42,324,594 42,549,907 RGD:1600115
G Ryr1 ryanodine receptor 1 JBrowse link 1 87,959,596 88,066,252 RGD:1600115
RGD:1624291
G Selenon selenoprotein N JBrowse link 5 152,748,497 152,765,489 RGD:1624291
RGD:13792537
G Six1 SIX homeobox 1 JBrowse link 6 95,929,060 95,934,296 RGD:13792537
G Ski SKI proto-oncogene JBrowse link 5 172,556,196 172,623,878 RGD:1624291
G Smo smoothened, frizzled class receptor JBrowse link 4 57,019,941 57,041,779 RGD:1624291
RGD:1600115
G Stac3 SH3 and cysteine rich domain 3 JBrowse link 7 70,807,427 70,815,271 RGD:1624291
RGD:1600115
G Wnt10b Wnt family member 10B JBrowse link 7 140,448,284 140,466,159 RGD:1624291
RGD:1600115
G Xk X-linked Kx blood group JBrowse link X 14,497,376 14,534,479 RGD:1624291
RGD:1600115
skeletal muscle myosin thick filament assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Myom1 myomesin 1 JBrowse link 9 119,353,840 119,469,196 RGD:13792537
G Myom2 myomesin 2 JBrowse link 16 79,587,136 79,672,871 RGD:13792537
G Myom3 myomesin 3 JBrowse link 5 154,109,293 154,159,943 RGD:13792537
G Tcap titin-cap JBrowse link 10 86,337,705 86,338,414 RGD:1624291
G Tmod1 tropomodulin 1 JBrowse link 5 61,635,244 61,712,052 RGD:1624291
G Ttn titin JBrowse link 3 63,565,160 63,837,815 RGD:1624291
skeletal muscle thin filament assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acta1 actin, alpha 1, skeletal muscle JBrowse link 19 56,674,072 56,677,084 RGD:1624291
RGD:13792537
RGD:1600115
G Actc1 actin, alpha, cardiac muscle 1 JBrowse link 3 105,507,403 105,512,939 RGD:1624291
RGD:1600115
G Lmod3 leiomodin 3 JBrowse link 4 129,604,378 129,619,136 RGD:1624291
RGD:1600115
G LOC102552318 actin-like JBrowse link 1 217,039,727 217,066,768 RGD:13792537
G Myom1 myomesin 1 JBrowse link 9 119,353,840 119,469,196 RGD:13792537
G Myom2 myomesin 2 JBrowse link 16 79,587,136 79,672,871 RGD:13792537
G Myom3 myomesin 3 JBrowse link 5 154,109,293 154,159,943 RGD:13792537
G Prox1 prospero homeobox 1 JBrowse link 13 108,382,536 108,444,107 RGD:1624291
RGD:1600115
G Tcap titin-cap JBrowse link 10 86,337,705 86,338,414 RGD:1624291
G Ttn titin JBrowse link 3 63,565,160 63,837,815 RGD:1624291
skeletal myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cflar CASP8 and FADD-like apoptosis regulator JBrowse link 9 65,534,608 65,586,395 RGD:1624291
RGD:1600115
striated muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sdc1 syndecan 1 JBrowse link 6 33,885,576 33,908,038 RGD:1624291
RGD:1600115
G Ttn titin JBrowse link 3 63,565,160 63,837,815 RGD:1624291
striated muscle myosin thick filament assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Myom1 myomesin 1 JBrowse link 9 119,353,840 119,469,196 RGD:13792537
G Myom2 myomesin 2 JBrowse link 16 79,587,136 79,672,871 RGD:13792537
G Myom3 myomesin 3 JBrowse link 5 154,109,293 154,159,943 RGD:13792537
T-tubule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ank2 ankyrin 2 JBrowse link 2 231,224,643 231,522,655 RGD:1624291
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 JBrowse link 12 39,553,903 39,603,326 RGD:1624291
RGD:1600115
G Bin1 bridging integrator 1 JBrowse link 18 25,163,575 25,222,139 RGD:1600115
RGD:1624291
G Csrp3 cysteine and glycine rich protein 3 JBrowse link 1 104,147,205 104,166,389 RGD:1624291
RGD:1600115
G Dysf dysferlin JBrowse link 4 115,700,942 115,901,873 RGD:1624291
RGD:1600115
G Myof myoferlin JBrowse link 1 256,585,410 256,734,727 RGD:1624291
RGD:1600115
G Sypl2 synaptophysin-like 2 JBrowse link 2 211,003,046 211,017,778 RGD:1624291
RGD:1600115
vascular smooth muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adm adrenomedullin JBrowse link 1 175,443,189 175,447,260 RGD:1624291
RGD:1600115
G Comp cartilage oligomeric matrix protein JBrowse link 16 20,798,437 20,807,070 RGD:1624291
RGD:1600115
G Eng endoglin JBrowse link 3 11,679,530 11,717,486 RGD:1624291
G Hes1 hes family bHLH transcription factor 1 JBrowse link 11 74,312,837 74,315,249 RGD:1624291
RGD:1600115
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 JBrowse link 1 29,191,170 29,201,257 RGD:1624291
G Ramp2 receptor activity modifying protein 2 JBrowse link 10 89,166,170 89,168,962 RGD:1624291
RGD:1600115
G Sgcb sarcoglycan, beta JBrowse link 14 37,113,194 37,128,623 RGD:1624291
RGD:1600115
ventricular cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:1624291
RGD:1600115
G Bmp10 bone morphogenetic protein 10 JBrowse link 4 119,224,906 119,230,534 RGD:1624291
RGD:1600115
G Ccnb1 cyclin B1 JBrowse link 2 30,782,133 30,791,106 RGD:2301353
G Cdk1 cyclin-dependent kinase 1 JBrowse link 20 20,576,341 20,591,510 RGD:2301353
G Fhl2 four and a half LIM domains 2 JBrowse link 9 49,920,611 49,994,906 RGD:1624291
RGD:1600115
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 JBrowse link 1 29,191,170 29,201,257 RGD:1624291
RGD:1600115
G Lmna lamin A/C JBrowse link 2 187,842,884 187,863,552 RGD:1624291
RGD:1600115
G Myh10 myosin heavy chain 10 JBrowse link 10 55,274,910 55,406,738 RGD:1624291
RGD:1600115
G Nkx2-6 NK2 homeobox 6 JBrowse link 15 51,034,620 51,038,715 RGD:1624291
G Pitx2 paired-like homeodomain 2 JBrowse link 2 233,602,732 233,621,059 RGD:1624291
RGD:1600115
ventricular cardiac myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mef2a myocyte enhancer factor 2a JBrowse link 1 128,207,715 128,341,681 RGD:1600115
RGD:1624291
G Nkx2-5 NK2 homeobox 5 JBrowse link 10 16,635,989 16,638,758 RGD:1624291
RGD:1600115
G Prox1 prospero homeobox 1 JBrowse link 13 108,382,536 108,444,107 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19245
    cellular process 17125
      cellular developmental process 4400
        cell development 2464
          muscle cell development 210
            T-tubule organization 7
            striated muscle cell development + 198
            vascular smooth muscle cell development + 9
Path 2
Term Annotations click to browse term
  biological_process 19245
    cellular process 17125
      cellular developmental process 4400
        cell differentiation 4180
          muscle cell differentiation 406
            muscle cell development 210
              T-tubule organization 7
              striated muscle cell development + 198
              vascular smooth muscle cell development + 9
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.