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ONTOLOGY REPORT - ANNOTATIONS


Term:striated muscle cell development
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Accession:GO:0055002 term browser browse the term
Definition:The process whose specific outcome is the progression of a striated muscle cell over time, from its formation to the mature structure. Striated muscle cells contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle.


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striated muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SDC1 syndecan 1 JBrowse link 17 15,220,906 15,243,974 RGD:13508589
atrial cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FHL2 four and a half LIM domains 2 JBrowse link 10 37,997,912 38,065,633 RGD:13508589
G NKX2-6 NK2 homeobox 6 JBrowse link 25 33,781,294 33,787,460 RGD:13508589
atrioventricular node cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MAML1 mastermind like transcriptional coactivator 1 JBrowse link 11 1,915,622 1,927,598 RGD:13508589
G NKX2-5 NK2 homeobox 5 JBrowse link 4 39,240,755 39,254,585 RGD:13508589
cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTN2 actinin alpha 2 JBrowse link 4 3,348,529 3,415,275 RGD:13508589
G ALPK3 alpha kinase 3 JBrowse link 3 54,064,963 54,119,720 RGD:13508589
G CAV3 caveolin 3 JBrowse link 20 9,384,901 9,398,055 RGD:13508589
G HNRNPU heterogeneous nuclear ribonucleoprotein U JBrowse link 7 35,832,956 35,842,898 RGD:13508589
G LRRC10 leucine rich repeat containing 10 JBrowse link 10 11,582,160 11,585,381 RGD:13508589
G MTOR mechanistic target of rapamycin kinase JBrowse link 2 84,818,893 84,939,283 RGD:13508589
G SGCB sarcoglycan beta JBrowse link 13 44,969,483 44,987,274 RGD:13508589
cardiac muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CXADR CXADR Ig-like cell adhesion molecule JBrowse link 31 14,021,292 14,079,049 RGD:13508589
G LOC491446 myomesin-2 RGD:13508589
G MYO18B myosin XVIIIB JBrowse link 26 19,520,287 19,776,007 RGD:13508589
G MYOM1 myomesin 1 JBrowse link 7 69,703,057 69,837,987 RGD:13508589
G MYOM3 myomesin 3 JBrowse link 2 75,481,191 75,529,559 RGD:13508589
G TCAP titin-cap JBrowse link 9 22,811,792 22,812,980 RGD:13508589
G TTN titin JBrowse link 36 22,146,870 22,417,858 RGD:13508589
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 15 2,669,546 2,708,480 RGD:13508589
cardiac muscle thin filament assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NEB nebulin JBrowse link 19 52,720,427 52,921,064 RGD:13508589
G NEBL nebulette JBrowse link 2 11,892,132 12,234,421 RGD:13508589
G NRAP nebulin related anchoring protein JBrowse link 28 24,522,285 24,592,267 RGD:13508589
cardiac myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTC1 actin alpha cardiac muscle 1 JBrowse link 30 2,514,825 2,519,398 RGD:13508589
G CSRP3 cysteine and glycine rich protein 3 JBrowse link 21 41,300,277 41,318,788 RGD:13508589
G FHOD3 formin homology 2 domain containing 3 JBrowse link 7 53,477,273 53,933,532 RGD:13508589
G LOC491446 myomesin-2 RGD:13508589
G MYLK3 myosin light chain kinase 3 JBrowse link 15 8,382,436 8,416,740 RGD:13508589
G MYOM1 myomesin 1 JBrowse link 7 69,703,057 69,837,987 RGD:13508589
G MYOM3 myomesin 3 JBrowse link 2 75,481,191 75,529,559 RGD:13508589
G PDGFRA platelet derived growth factor receptor alpha JBrowse link 13 46,729,722 46,775,828 RGD:13508589
G PDGFRB platelet derived growth factor receptor beta JBrowse link 4 58,925,922 58,963,639 RGD:13508589
G SRF serum response factor JBrowse link 12 11,664,441 11,673,846 RGD:13508589
G TCAP titin-cap JBrowse link 9 22,811,792 22,812,980 RGD:13508589
G TTN titin JBrowse link 36 22,146,870 22,417,858 RGD:13508589
muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AFG3L2 AFG3 like matrix AAA peptidase subunit 2 JBrowse link 7 77,749,029 77,787,466 RGD:13508589
G CACNA2D2 calcium voltage-gated channel auxiliary subunit alpha2delta 2 JBrowse link 20 38,859,047 38,995,239 RGD:13508589
G CHRNB1 cholinergic receptor nicotinic beta 1 subunit JBrowse link 5 32,375,152 32,383,517 RGD:13508589
G DMD dystrophin JBrowse link X 26,290,903 28,444,635 RGD:13508589
G FLNC filamin C JBrowse link 14 7,792,708 7,819,723 RGD:13508589
G LOX lysyl oxidase JBrowse link 11 12,023,645 12,040,015 RGD:13508589
G MYOF myoferlin JBrowse link 28 7,602,778 7,745,185 RGD:13508589
G NEB nebulin JBrowse link 19 52,720,427 52,921,064 RGD:13508589
G NEBL nebulette JBrowse link 2 11,892,132 12,234,421 RGD:13508589
G NRAP nebulin related anchoring protein JBrowse link 28 24,522,285 24,592,267 RGD:13508589
G PTCD2 pentatricopeptide repeat domain 2 JBrowse link 2 55,351,678 55,382,881 RGD:13508589
G SGCB sarcoglycan beta JBrowse link 13 44,969,483 44,987,274 RGD:13508589
G WFIKKN1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 JBrowse link 6 39,934,105 39,937,666 RGD:13508589
G WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 JBrowse link 9 26,711,470 26,717,625 RGD:13508589
myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LMOD2 leiomodin 2 JBrowse link 14 11,916,842 11,924,616 RGD:13508589
G PGM5 phosphoglucomutase 5 JBrowse link 1 88,823,883 89,011,091 RGD:13508589
G TMOD1 tropomodulin 1 JBrowse link 11 54,853,205 54,914,236 RGD:13508589
G TMOD2 tropomodulin 2 JBrowse link 30 17,425,216 17,501,484 RGD:13508589
G TMOD3 tropomodulin 3 JBrowse link 30 17,509,533 17,594,355 RGD:13508589
G TMOD4 tropomodulin 4 JBrowse link 17 60,234,061 60,238,950 RGD:13508589
myotube cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DMD dystrophin JBrowse link X 26,290,903 28,444,635 RGD:13508589
G NFATC2 nuclear factor of activated T cells 2 JBrowse link 24 37,606,977 37,734,813 RGD:13508589
G SMYD3 SET and MYND domain containing 3 JBrowse link 7 36,561,080 37,250,336 RGD:13508589
negative regulation of cardiac myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMAD4 SMAD family member 4 JBrowse link 1 23,875,989 23,930,027 RGD:13508589
negative regulation of cell growth involved in cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GSK3A glycogen synthase kinase 3 alpha JBrowse link 1 112,129,116 112,138,714 RGD:13508589
G PI16 peptidase inhibitor 16 JBrowse link 12 6,017,312 6,027,048 RGD:13508589
negative regulation of sarcomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CAV3 caveolin 3 JBrowse link 20 9,384,901 9,398,055 RGD:13508589
positive regulation of cardiac muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
positive regulation of cell growth involved in cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EDN1 endothelin 1 JBrowse link 35 11,808,892 11,815,383 RGD:13508589
positive regulation of sarcomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP10 bone morphogenetic protein 10 JBrowse link 10 67,717,047 67,724,778 RGD:13508589
G EDN1 endothelin 1 JBrowse link 35 11,808,892 11,815,383 RGD:13508589
G PROX1 prospero homeobox 1 JBrowse link 7 11,996,282 12,047,693 RGD:13508589
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTN3 actinin alpha 3 JBrowse link 18 50,787,353 50,801,036 RGD:13508589
G LMOD3 leiomodin 3 JBrowse link 20 22,612,916 22,629,207 RGD:13508589
G MYF5 myogenic factor 5 JBrowse link 15 23,049,235 23,051,604 RGD:13508589
G MYF6 myogenic factor 6 JBrowse link 15 23,039,090 23,041,092 RGD:13508589
G MYOD1 myogenic differentiation 1 JBrowse link 21 40,257,792 40,260,461 RGD:13508589
G MYOG myogenin JBrowse link 7 112,116 114,604 RGD:13508589
G SHOX2 short stature homeobox 2 JBrowse link 23 51,484,696 51,492,586 RGD:13508589
regulation of sarcomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AKAP13 A-kinase anchoring protein 13 JBrowse link 3 49,076,313 49,310,564 RGD:13508589
regulation of skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HDAC4 histone deacetylase 4 JBrowse link 25 49,318,621 49,545,314 RGD:13508589
sarcomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTN1 actinin alpha 1 JBrowse link 8 42,714,806 42,808,318 RGD:13508589
G ACTN2 actinin alpha 2 JBrowse link 4 3,348,529 3,415,275 RGD:13508589
G CAPN3 calpain 3 JBrowse link 30 9,329,190 9,384,622 RGD:13508589
G CAPN9 calpain 9 JBrowse link 4 8,613,222 8,653,534 RGD:13508589
G CFL2 cofilin 2 JBrowse link 8 13,578,152 13,582,408 RGD:13508589
G CSRP1 cysteine and glycine rich protein 1 JBrowse link 7 1,400,650 1,421,918 RGD:13508589
G CSRP3 cysteine and glycine rich protein 3 JBrowse link 21 41,300,277 41,318,788 RGD:13508589
G FHOD3 formin homology 2 domain containing 3 JBrowse link 7 53,477,273 53,933,532 RGD:13508589
G ITGB1 integrin subunit beta 1 JBrowse link 2 3,728,472 3,757,696 RGD:13508589
G KLHL41 kelch like family member 41 JBrowse link 36 14,235,845 14,251,621 RGD:13508589
G LDB3 LIM domain binding 3 JBrowse link 4 34,367,155 34,421,992 RGD:13508589
G LOC491446 myomesin-2 RGD:13508589
G MYLK3 myosin light chain kinase 3 JBrowse link 15 8,382,436 8,416,740 RGD:13508589
G MYOM1 myomesin 1 JBrowse link 7 69,703,057 69,837,987 RGD:13508589
G MYOM3 myomesin 3 JBrowse link 2 75,481,191 75,529,559 RGD:13508589
G MYOZ1 myozenin 1 JBrowse link 4 24,158,532 24,165,416 RGD:13508589
G MYOZ2 myozenin 2 JBrowse link 32 38,088,505 38,132,265 RGD:13508589
G MYPN myopalladin JBrowse link 4 19,364,146 19,468,827 RGD:13508589
G NKX2-5 NK2 homeobox 5 JBrowse link 4 39,240,755 39,254,585 RGD:13508589
G SIX4 SIX homeobox 4 JBrowse link 8 35,735,893 35,748,976 RGD:13508589
G SRF serum response factor JBrowse link 12 11,664,441 11,673,846 RGD:13508589
G TCAP titin-cap JBrowse link 9 22,811,792 22,812,980 RGD:13508589
G TNNT1 troponin T1, slow skeletal type JBrowse link 1 102,479,617 102,490,776 RGD:13508589
G TNNT2 troponin T2, cardiac type JBrowse link 7 1,598,306 1,620,531 RGD:13508589
G TNNT3 troponin T3, fast skeletal type JBrowse link 18 46,131,925 46,148,577 RGD:13508589
G TTN titin JBrowse link 36 22,146,870 22,417,858 RGD:13508589
G WDR1 WD repeat domain 1 JBrowse link 3 69,305,731 69,348,183 RGD:13508589
sarcomerogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TCAP titin-cap JBrowse link 9 22,811,792 22,812,980 RGD:13508589
sinoatrial node cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BVES blood vessel epicardial substance JBrowse link 12 62,542,274 62,581,110 RGD:13508589
G TBX3 T-box transcription factor 3 JBrowse link 26 11,694,885 11,709,594 RGD:13508589
skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTA1 actin alpha 1, skeletal muscle JBrowse link 4 9,811,726 9,814,533 RGD:13508589
G ACTN1 actinin alpha 1 JBrowse link 8 42,714,806 42,808,318 RGD:13508589
G BIN3 bridging integrator 3 JBrowse link 25 34,615,683 34,659,739 RGD:13508589
G CAV2 caveolin 2 JBrowse link 14 55,437,622 55,445,481 RGD:13508589
G DNER delta/notch like EGF repeat containing JBrowse link 25 41,709,570 41,887,705 RGD:13508589
G HOMER1 homer scaffold protein 1 JBrowse link 3 27,395,337 27,525,822 RGD:13508589
G KEL Kell metallo-endopeptidase JBrowse link 16 6,396,724 6,645,221 RGD:13508589
G KLHL40 kelch like family member 40 JBrowse link 23 11,812,268 11,820,426 RGD:13508589
G KLHL41 kelch like family member 41 JBrowse link 36 14,235,845 14,251,621 RGD:13508589
G LMOD3 leiomodin 3 JBrowse link 20 22,612,916 22,629,207 RGD:13508589
G MYOD1 myogenic differentiation 1 JBrowse link 21 40,257,792 40,260,461 RGD:13508589
G MYOG myogenin JBrowse link 7 112,116 114,604 RGD:13508589
G MYORG myogenesis regulating glycosidase (putative) JBrowse link 11 51,070,088 51,077,595 RGD:13508589
G P2RX2 purinergic receptor P2X 2 JBrowse link 26 480,370 485,527 RGD:13508589
G PPP3CA protein phosphatase 3 catalytic subunit alpha JBrowse link 32 22,688,141 22,996,693 RGD:13508589
G RCAN1 regulator of calcineurin 1 JBrowse link 31 29,908,046 30,002,412 RGD:13508589
G RIPOR2 RHO family interacting cell polarization regulator 2 JBrowse link 35 22,823,053 23,041,765 RGD:13508589
G RYR1 ryanodine receptor 1 JBrowse link 1 114,461,350 114,579,577 RGD:13508589
G SIX1 SIX homeobox 1 JBrowse link 8 35,676,705 35,679,534 RGD:13508589
G WNT10B Wnt family member 10B JBrowse link 27 5,599,905 5,605,506 RGD:13508589
G XK X-linked Kx blood group JBrowse link X 32,453,404 32,498,145 RGD:13508589
skeletal muscle myosin thick filament assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC491446 myomesin-2 RGD:13508589
G MYOM1 myomesin 1 JBrowse link 7 69,703,057 69,837,987 RGD:13508589
G MYOM3 myomesin 3 JBrowse link 2 75,481,191 75,529,559 RGD:13508589
G TCAP titin-cap JBrowse link 9 22,811,792 22,812,980 RGD:13508589
G TTN titin JBrowse link 36 22,146,870 22,417,858 RGD:13508589
skeletal muscle thin filament assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTA1 actin alpha 1, skeletal muscle JBrowse link 4 9,811,726 9,814,533 RGD:13508589
G ACTC1 actin alpha cardiac muscle 1 JBrowse link 30 2,514,825 2,519,398 RGD:13508589
G LMOD3 leiomodin 3 JBrowse link 20 22,612,916 22,629,207 RGD:13508589
G LOC483676 actin-85C-like JBrowse link 18 47,287,133 47,320,107 RGD:13508589
G LOC491446 myomesin-2 RGD:13508589
G MYOM1 myomesin 1 JBrowse link 7 69,703,057 69,837,987 RGD:13508589
G MYOM3 myomesin 3 JBrowse link 2 75,481,191 75,529,559 RGD:13508589
G PROX1 prospero homeobox 1 JBrowse link 7 11,996,282 12,047,693 RGD:13508589
G TCAP titin-cap JBrowse link 9 22,811,792 22,812,980 RGD:13508589
G TTN titin JBrowse link 36 22,146,870 22,417,858 RGD:13508589
skeletal myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CFLAR CASP8 and FADD like apoptosis regulator JBrowse link 37 10,268,407 10,307,803 RGD:13508589
striated muscle myosin thick filament assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC491446 myomesin-2 RGD:13508589
G MYOM1 myomesin 1 JBrowse link 7 69,703,057 69,837,987 RGD:13508589
G MYOM3 myomesin 3 JBrowse link 2 75,481,191 75,529,559 RGD:13508589
G TTN titin JBrowse link 36 22,146,870 22,417,858 RGD:13508589
ventricular cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG5 autophagy related 5 JBrowse link 12 63,565,859 63,692,383 RGD:13508589
G BMP10 bone morphogenetic protein 10 JBrowse link 10 67,717,047 67,724,778 RGD:13508589
G FHL2 four and a half LIM domains 2 JBrowse link 10 37,997,912 38,065,633 RGD:13508589
G LMNA lamin A/C JBrowse link 7 41,702,491 41,719,870 RGD:13508589
G NKX2-6 NK2 homeobox 6 JBrowse link 25 33,781,294 33,787,460 RGD:13508589
ventricular cardiac myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MEF2A myocyte enhancer factor 2A JBrowse link 3 41,012,103 41,177,588 RGD:13508589
G NKX2-5 NK2 homeobox 5 JBrowse link 4 39,240,755 39,254,585 RGD:13508589
G PROX1 prospero homeobox 1 JBrowse link 7 11,996,282 12,047,693 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 13313
    cellular process 11727
      cellular developmental process 2431
        cell development 1315
          muscle cell development 109
            striated muscle cell development 103
              cardiac muscle cell development + 41
              muscle fiber development + 49
              myofibril assembly + 50
              myotube cell development + 29
Path 2
Term Annotations click to browse term
  biological_process 13313
    cellular process 11727
      cellular developmental process 2431
        cell differentiation 2299
          muscle cell differentiation 213
            striated muscle cell differentiation 166
              striated muscle cell development 103
                cardiac muscle cell development + 41
                muscle fiber development + 49
                myofibril assembly + 50
                myotube cell development + 29
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.