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ONTOLOGY REPORT - ANNOTATIONS


Term:striated muscle cell development
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Accession:GO:0055002 term browser browse the term
Definition:The process whose specific outcome is the progression of a striated muscle cell over time, from its formation to the mature structure. Striated muscle cells contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle.


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striated muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SDC1 syndecan 1 JBrowse link 3 117,987,585 118,011,886 RGD:14298760
atrial cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FHL2 four and a half LIM domains 2 JBrowse link 3 49,389,900 49,448,459 RGD:14298760
G NKX2-6 NK2 homeobox 6 JBrowse link 14 7,811,200 7,815,553 RGD:14298760
atrioventricular node cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MAML1 mastermind like transcriptional coactivator 1 JBrowse link 2 78,818,658 78,876,633 RGD:14298760
G NKX2-5 NK2 homeobox 5 JBrowse link 16 51,086,014 51,089,165 RGD:14298760
cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALPK2 alpha kinase 2 JBrowse link 1 162,175,241 162,308,074 RGD:14298760
G CAV3 caveolin 3 JBrowse link 13 65,117,868 65,130,886 RGD:14298760
G HNRNPU heterogeneous nuclear ribonucleoprotein U JBrowse link 10 17,475,266 17,497,060 RGD:14298760
G LRRC10 leucine rich repeat containing 10 JBrowse link 5 33,878,652 33,880,694 RGD:14298760
G MTOR mechanistic target of rapamycin kinase JBrowse link 6 71,286,989 71,412,913 RGD:14298760
cardiac muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALPK3 alpha kinase 3 JBrowse link 7 52,667,342 52,718,775 RGD:14298760
G CXADR CXADR Ig-like cell adhesion molecule JBrowse link 13 182,134,416 182,185,977 RGD:14298760
G MYO18B myosin XVIIIB JBrowse link 14 43,467,823 43,687,729 RGD:14298760
G MYOM1 myomesin 1 JBrowse link 6 103,451,206 103,593,093 RGD:14298760
G MYOM2 myomesin 2 JBrowse link 15 33,529,559 33,606,928 RGD:14298760
G MYOM3 myomesin 3 JBrowse link 6 81,803,877 81,859,506 RGD:14298760
G SGCD sarcoglycan delta JBrowse link 16 66,447,982 67,481,709 RGD:14298760
G TCAP titin-cap JBrowse link 12 22,651,666 22,652,904 RGD:14298760
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 6 96,008,307 96,057,131 RGD:14298760
cardiac muscle thin filament assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NEB nebulin JBrowse link 15 546,187 766,131 RGD:14298760
G NEBL nebulette JBrowse link 10 53,602,929 53,957,869 RGD:14298760
cardiac myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTC1 actin alpha cardiac muscle 1 JBrowse link 1 136,281,119 136,286,551 RGD:14298760
G ALPK3 alpha kinase 3 JBrowse link 7 52,667,342 52,718,775 RGD:14298760
G CSRP3 cysteine and glycine rich protein 3 JBrowse link 2 40,219,288 40,240,614 RGD:14298760
G FHOD3 formin homology 2 domain containing 3 JBrowse link 6 120,036,824 120,585,987 RGD:14298760
G MYL2 myosin light chain 2 JBrowse link 14 32,205,953 32,213,848 RGD:14298760
G MYLK3 myosin light chain kinase 3 JBrowse link 6 37,850,117 37,920,862 RGD:14298760
G MYOM1 myomesin 1 JBrowse link 6 103,451,206 103,593,093 RGD:14298760
G MYOM2 myomesin 2 JBrowse link 15 33,529,559 33,606,928 RGD:14298760
G MYOM3 myomesin 3 JBrowse link 6 81,803,877 81,859,506 RGD:14298760
G PDGFRA platelet derived growth factor receptor alpha JBrowse link 8 40,966,568 41,021,440 RGD:14298760
G PDGFRB platelet derived growth factor receptor beta JBrowse link 2 151,155,753 151,192,818 RGD:14298760
G SRF serum response factor JBrowse link 7 38,213,300 38,223,686 RGD:14298760
G TCAP titin-cap JBrowse link 12 22,651,666 22,652,904 RGD:14298760
cell growth involved in cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRA1A adrenoceptor alpha 1A JBrowse link 14 10,623,391 10,733,378 RGD:14298760
muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CACNA2D2 calcium voltage-gated channel auxiliary subunit alpha2delta 2 JBrowse link 13 32,845,110 32,988,851 RGD:14298760
G CACNB4 calcium voltage-gated channel auxiliary subunit beta 4 JBrowse link 15 402,801 455,691 RGD:14298760
G CHRNB1 cholinergic receptor nicotinic beta 1 subunit JBrowse link 12 52,749,422 52,774,642 RGD:14298760
G COMP cartilage oligomeric matrix protein JBrowse link 2 59,061,409 59,068,951 RGD:14298760
G FGF11 fibroblast growth factor 11 JBrowse link 12 52,742,090 52,749,331 RGD:14298760
G FLNC filamin C JBrowse link 18 19,759,734 19,787,616 RGD:14298760
G LOX lysyl oxidase JBrowse link 2 125,595,115 125,607,026 RGD:14298760
G MYL2 myosin light chain 2 JBrowse link 14 32,205,953 32,213,848 RGD:14298760
G MYOF myoferlin JBrowse link 14 104,770,514 104,941,212 RGD:14298760
G NEB nebulin JBrowse link 15 546,187 766,131 RGD:14298760
G NEBL nebulette JBrowse link 10 53,602,929 53,957,869 RGD:14298760
G PTCD2 pentatricopeptide repeat domain 2 JBrowse link 16 48,605,014 48,635,954 RGD:14298760
G UCHL1 ubiquitin C-terminal hydrolase L1 JBrowse link 8 32,353,766 32,367,288 RGD:14298760
G WFIKKN1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 JBrowse link 3 41,136,200 41,139,986 RGD:14298760
G WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 JBrowse link 12 27,093,241 27,100,423 RGD:14298760
myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CAPN3 calpain 3 JBrowse link 1 128,960,117 129,013,508 RGD:14298760
G LMOD1 leiomodin 1 JBrowse link 10 24,165,293 24,194,823 RGD:14298760
G LMOD2 leiomodin 2 JBrowse link 18 23,803,927 23,815,772 RGD:14298760
G PGM5 phosphoglucomutase 5 JBrowse link 1 221,634,516 221,837,764 RGD:14298760
G TMOD1 tropomodulin 1 JBrowse link 1 239,375,150 239,468,387 RGD:14298760
G TMOD2 tropomodulin 2 JBrowse link 1 119,956,583 120,009,372 RGD:14298760
G TMOD3 tropomodulin 3 JBrowse link 1 119,864,878 119,948,795 RGD:14298760
G TMOD4 tropomodulin 4 JBrowse link 4 98,074,380 98,079,346 RGD:14298760
myotube cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IGF1 insulin like growth factor 1 JBrowse link 5 81,762,027 81,909,253 RGD:14298760
G NFATC2 nuclear factor of activated T cells 2 JBrowse link 17 52,743,570 52,907,373 RGD:14298760
G SMYD3 SET and MYND domain containing 3 JBrowse link 10 18,267,598 19,019,520 RGD:14298760
negative regulation of cardiac myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMAD4 SMAD family member 4 JBrowse link 1 100,521,843 100,633,501 RGD:14298760
negative regulation of cell growth involved in cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GSK3A glycogen synthase kinase 3 alpha JBrowse link 6 49,690,319 49,700,735 RGD:14298760
G PI16 peptidase inhibitor 16 JBrowse link 7 32,600,952 32,613,505 RGD:14298760
negative regulation of sarcomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CAV3 caveolin 3 JBrowse link 13 65,117,868 65,130,886 RGD:14298760
positive regulation of cardiac muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 1 183,415,989 183,422,888 RGD:14298760
positive regulation of cell growth involved in cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EDN1 endothelin 1 JBrowse link 7 8,752,018 8,758,354 RGD:14298760
G IGF1 insulin like growth factor 1 JBrowse link 5 81,762,027 81,909,253 RGD:14298760
positive regulation of sarcomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP10 bone morphogenetic protein 10 JBrowse link 3 73,519,904 73,530,448 RGD:14298760
G EDN1 endothelin 1 JBrowse link 7 8,752,018 8,758,354 RGD:14298760
G PROX1 prospero homeobox 1 JBrowse link 9 129,527,704 129,583,693 RGD:14298760
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MYF5 myogenic factor 5 JBrowse link 5 100,753,440 100,755,558 RGD:14298760
G MYF6 myogenic factor 6 JBrowse link 5 100,762,918 100,764,771 RGD:14298760
G MYOD1 myogenic differentiation 1 JBrowse link 2 41,422,522 41,424,236 RGD:14298760
G SHOX2 short stature homeobox 2 JBrowse link 13 97,879,586 97,892,276 RGD:14298760
regulation of sarcomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MEF2C myocyte enhancer factor 2C JBrowse link 2 96,122,407 96,296,927 RGD:14298760
regulation of skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FBXO22 F-box protein 22 JBrowse link 7 56,146,874 56,189,921 RGD:14298760
sarcomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALPK3 alpha kinase 3 JBrowse link 7 52,667,342 52,718,775 RGD:14298760
G BBS5 Bardet-Biedl syndrome 5 JBrowse link 15 75,850,860 75,874,950 RGD:14298760
G CAPN3 calpain 3 JBrowse link 1 128,960,117 129,013,508 RGD:14298760
G CAPN9 calpain 9 JBrowse link 14 59,581,999 59,623,553 RGD:14298760
G CASQ1 calsequestrin 1 JBrowse link 4 90,276,752 90,288,990 RGD:14298760
G CASQ2 calsequestrin 2 JBrowse link 4 104,918,204 104,984,019 RGD:14298760
G CFL2 cofilin 2 JBrowse link 7 65,090,170 65,094,521 RGD:14298760
G CSRP1 cysteine and glycine rich protein 1 JBrowse link 10 23,843,130 23,864,020 RGD:14298760
G CSRP3 cysteine and glycine rich protein 3 JBrowse link 2 40,219,288 40,240,614 RGD:14298760
G FHOD3 formin homology 2 domain containing 3 JBrowse link 6 120,036,824 120,585,987 RGD:14298760
G FOXP1 forkhead box P1 JBrowse link 13 52,346,844 52,974,358 RGD:14298760
G ITGB1 integrin subunit beta 1 JBrowse link 10 56,078,393 56,130,608 RGD:14298760
G KLHL41 kelch like family member 41 JBrowse link 15 75,875,694 75,893,789 RGD:14298760
G LDB3 LIM domain binding 3 JBrowse link 14 87,660,961 87,722,249 RGD:14298760
G LMOD2 leiomodin 2 JBrowse link 18 23,803,927 23,815,772 RGD:14298760
G MYLK3 myosin light chain kinase 3 JBrowse link 6 37,850,117 37,920,862 RGD:14298760
G MYOM1 myomesin 1 JBrowse link 6 103,451,206 103,593,093 RGD:14298760
G MYOM2 myomesin 2 JBrowse link 15 33,529,559 33,606,928 RGD:14298760
G MYOM3 myomesin 3 JBrowse link 6 81,803,877 81,859,506 RGD:14298760
G MYOZ1 myozenin 1 JBrowse link 14 76,445,109 76,453,014 RGD:14298760
G MYOZ2 myozenin 2 JBrowse link 8 104,578,942 104,609,367 RGD:14298760
G MYPN myopalladin JBrowse link 14 71,283,271 71,388,591 RGD:14298760
G NKX2-5 NK2 homeobox 5 JBrowse link 16 51,086,014 51,089,165 RGD:14298760
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha JBrowse link 12 11,662,344 11,681,490 RGD:14298760
G SIX4 SIX homeobox 4 JBrowse link 1 189,670,390 189,682,378 RGD:14298760
G SRF serum response factor JBrowse link 7 38,213,300 38,223,686 RGD:14298760
G TNNT1 troponin T1, slow skeletal type JBrowse link 6 59,351,445 59,365,584 RGD:14298760
G TNNT2 troponin T2, cardiac type JBrowse link 10 23,749,528 23,759,696 RGD:14298760
G WDR1 WD repeat domain 1 JBrowse link 8 6,413,338 6,452,383 RGD:14298760
sarcomerogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TCAP titin-cap JBrowse link 12 22,651,666 22,652,904 RGD:14298760
sinoatrial node cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BVES blood vessel epicardial substance JBrowse link 1 71,316,354 71,360,255 RGD:14298760
G TBX3 T-box transcription factor 3 JBrowse link 14 37,582,704 37,596,767 RGD:14298760
skeletal muscle fiber development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTA1 actin alpha 1, skeletal muscle JBrowse link 14 60,412,651 60,415,687 RGD:14298760
G BBS5 Bardet-Biedl syndrome 5 JBrowse link 15 75,850,860 75,874,950 RGD:14298760
G CAV2 caveolin 2 JBrowse link 18 29,699,012 29,707,277 RGD:14298760
G DNER delta/notch like EGF repeat containing JBrowse link 15 130,414,159 130,754,043 RGD:14298760
G GPX1 glutathione peroxidase 1 JBrowse link 13 31,916,269 31,917,337 RGD:14298760
G HOMER1 homer scaffold protein 1 JBrowse link 2 88,116,664 88,253,843 RGD:14298760
G KEL Kell metallo-endopeptidase (Kell blood group) JBrowse link 18 7,242,378 7,279,345 RGD:14298760
G KLHL40 kelch like family member 40 JBrowse link 13 26,202,607 26,211,528 RGD:14298760
G KLHL41 kelch like family member 41 JBrowse link 15 75,875,694 75,893,789 RGD:14298760
G MYOD1 myogenic differentiation 1 JBrowse link 2 41,422,522 41,424,236 RGD:14298760
G MYORG myogenesis regulating glycosidase (putative) JBrowse link 10 32,436,349 32,443,971 RGD:14298760
G P2RX2 purinergic receptor P2X 2 JBrowse link 14 22,854,828 22,858,574 RGD:14298760
G PPP3CA protein phosphatase 3 catalytic subunit alpha JBrowse link 8 119,429,181 119,754,615 RGD:14298760
G RCAN1 regulator of calcineurin 1 JBrowse link 13 198,106,256 198,205,727 RGD:14298760
G RIPOR2 RHO family interacting cell polarization regulator 2 JBrowse link 7 19,609,358 19,842,345 RGD:14298760
G RYR1 ryanodine receptor 1 JBrowse link 6 47,339,759 47,458,457 RGD:14298760
G SELENON selenoprotein N JBrowse link 6 83,246,934 83,262,748 RGD:14298760
G SIX1 SIX homeobox 1 JBrowse link 1 189,620,430 189,624,652 RGD:14298760
G SMO smoothened, frizzled class receptor JBrowse link 18 19,450,730 19,478,796 RGD:14298760
G STAC3 SH3 and cysteine rich domain 3 JBrowse link 5 22,549,008 22,556,330 RGD:14298760
G WNT10B Wnt family member 10B JBrowse link 5 14,997,377 15,013,928 RGD:14298760
G XK X-linked Kx blood group JBrowse link X 33,544,287 33,602,576 RGD:14298760
skeletal muscle myosin thick filament assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALPK3 alpha kinase 3 JBrowse link 7 52,667,342 52,718,775 RGD:14298760
G MYOM1 myomesin 1 JBrowse link 6 103,451,206 103,593,093 RGD:14298760
G MYOM2 myomesin 2 JBrowse link 15 33,529,559 33,606,928 RGD:14298760
G MYOM3 myomesin 3 JBrowse link 6 81,803,877 81,859,506 RGD:14298760
G TCAP titin-cap JBrowse link 12 22,651,666 22,652,904 RGD:14298760
skeletal muscle thin filament assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTA1 actin alpha 1, skeletal muscle JBrowse link 14 60,412,651 60,415,687 RGD:14298760
G ACTC1 actin alpha cardiac muscle 1 JBrowse link 1 136,281,119 136,286,551 RGD:14298760
G ALPK3 alpha kinase 3 JBrowse link 7 52,667,342 52,718,775 RGD:14298760
G MYOM1 myomesin 1 JBrowse link 6 103,451,206 103,593,093 RGD:14298760
G MYOM2 myomesin 2 JBrowse link 15 33,529,559 33,606,928 RGD:14298760
G MYOM3 myomesin 3 JBrowse link 6 81,803,877 81,859,506 RGD:14298760
G PROX1 prospero homeobox 1 JBrowse link 9 129,527,704 129,583,693 RGD:14298760
G TCAP titin-cap JBrowse link 12 22,651,666 22,652,904 RGD:14298760
skeletal myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CFLAR CASP8 and FADD like apoptosis regulator JBrowse link 15 104,780,744 104,835,631 RGD:14298760
striated muscle myosin thick filament assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALPK3 alpha kinase 3 JBrowse link 7 52,667,342 52,718,775 RGD:14298760
G MYOM1 myomesin 1 JBrowse link 6 103,451,206 103,593,093 RGD:14298760
G MYOM2 myomesin 2 JBrowse link 15 33,529,559 33,606,928 RGD:14298760
G MYOM3 myomesin 3 JBrowse link 6 81,803,877 81,859,506 RGD:14298760
ventricular cardiac muscle cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:14298760
G BMP10 bone morphogenetic protein 10 JBrowse link 3 73,519,904 73,530,448 RGD:14298760
G FHL2 four and a half LIM domains 2 JBrowse link 3 49,389,900 49,448,459 RGD:14298760
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 JBrowse link 1 37,219,887 37,231,321 RGD:14298760
G LMNA lamin A/C JBrowse link 4 93,899,019 93,927,255 RGD:14298760
G NKX2-6 NK2 homeobox 6 JBrowse link 14 7,811,200 7,815,553 RGD:14298760
ventricular cardiac myofibril assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MEF2A myocyte enhancer factor 2A JBrowse link 1 138,398,270 138,508,639 RGD:14298760
G NKX2-5 NK2 homeobox 5 JBrowse link 16 51,086,014 51,089,165 RGD:14298760
G PROX1 prospero homeobox 1 JBrowse link 9 129,527,704 129,583,693 RGD:14298760

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14320
    cellular process 12707
      cellular developmental process 2846
        cell development 1526
          muscle cell development 119
            striated muscle cell development 110
              cardiac muscle cell development + 43
              muscle fiber development + 51
              myofibril assembly + 51
              myotube cell development + 29
Path 2
Term Annotations click to browse term
  biological_process 14320
    cellular process 12707
      cellular developmental process 2846
        cell differentiation 2693
          muscle cell differentiation 238
            striated muscle cell differentiation 188
              striated muscle cell development 110
                cardiac muscle cell development + 43
                muscle fiber development + 51
                myofibril assembly + 51
                myotube cell development + 29
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.