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ONTOLOGY REPORT - ANNOTATIONS


Term:digestive system development
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Accession:GO:0055123 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.


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digestive system development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barx1 BARX homeobox 1 ISO MGI:MGI:3578634 (MGI:MGI:3846278|PMID:19208343) RGD PMID:19208343 MGI:MGI:3846278 NCBI chr17:14,824,721...14,828,196
Ensembl chr17:14,824,734...14,828,329
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C ISO MGI:MGI:1933758|MGI:MGI:3840687 (MGI:MGI:3839493|PMID:19276117) RGD PMID:19276117 MGI:MGI:3839493 NCBI chr 1:216,661,067...216,663,791
Ensembl chr 1:216,661,080...216,663,721
JBrowse link
G Cela1 chymotrypsin like elastase 1 ISO MGI:MGI:2148594 (MGI:MGI:3703452|PMID:17222338) RGD PMID:17222338 MGI:MGI:3703452 NCBI chr 7:142,305,337...142,318,621
Ensembl chr 7:142,305,338...142,318,620
JBrowse link
G Gip gastric inhibitory polypeptide IEP RGD PMID:8674860 RGD:2312540 NCBI chr10:83,835,080...83,848,399
Ensembl chr10:83,840,303...83,848,396
JBrowse link
G Hip1r huntingtin interacting protein 1 related ISO (MGI:MGI:3801545|PMID:18535670) RGD PMID:18535670 MGI:MGI:3801545 NCBI chr12:38,024,517...38,053,184
Ensembl chr12:38,024,519...38,053,085
JBrowse link
G Nkx3-2 NK3 homeobox 2 ISO MGI:MGI:3848005 (MGI:MGI:3846278|PMID:19208343) RGD PMID:19208343 MGI:MGI:3846278 NCBI chr14:73,813,531...73,818,489
Ensembl chr14:73,813,528...73,815,757
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:MGI:2158732 (MGI:MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:MGI:2136268 (MGI:MGI:2135655|PMID:11493526) RGD PMID:11493526 MGI:MGI:2135655 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector ISO
IEA
MGI:MGI:5558098|MGI:MGI:5558100 (MGI:MGI:5544506|PMID:24302887)
GO_REF:0000107
RGD
Ensembl
PMID:24302887 GO_REF:0000107, MGI:MGI:5544506 NCBI chr14:106,393,959...106,759,511
Ensembl chr14:106,393,959...106,759,505
JBrowse link
G Wdr19 WD repeat domain 19 ISO MGI:MGI:5315747 (MGI:MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:MGI:5314316 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120
JBrowse link
cloaca development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO
ISS
UniProtKB:F8W3V6 (MGI:MGI:5306539|PMID:21959375)
GO_REF:0000024
RGD
UniProt
PMID:21959375 GO_REF:0000024, MGI:MGI:5306539 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
cloacal septation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
(PMID:17442697)
Ensembl
RGD
PMID:17442697 GO_REF:0000107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Tp63 tumor protein p63 ISO MGI:MGI:1934269 (MGI:MGI:2387879|PMID:12368184) RGD PMID:12368184 MGI:MGI:2387879 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
G Wnt11 Wnt family member 11 ISO (PMID:9757009) RGD PMID:9757009 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc103 coiled-coil domain containing 103 ISO (PMID:22581229) RGD PMID:22581229 NCBI chr10:90,984,213...90,987,829
Ensembl chr10:90,984,227...90,987,823
JBrowse link
G Ccdc39 coiled-coil domain containing 39 ISO (PMID:22693285) RGD PMID:22693285 NCBI chr 2:120,278,605...120,367,829
Ensembl chr 2:120,278,605...120,316,600
JBrowse link
G Ccdc40 coiled-coil domain containing 40 ISO (PMID:22693285) RGD PMID:22693285 NCBI chr10:108,055,270...108,393,408
Ensembl chr10:108,340,240...108,372,862
JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 ISO
IEA
(PMID:19944405)
GO_REF:0000107
RGD
Ensembl
PMID:19944405 GO_REF:0000107 NCBI chr19:52,217,427...52,245,930
Ensembl chr19:52,217,984...52,245,929
JBrowse link
G Megf8 multiple EGF-like-domains 8 ISO
ISS
IEA
MGI:MGI:3722325 (MGI:MGI:3839019|PMID:18043505)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:18043505 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3839019 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Zic3 Zic family member 3 ISO (PMID:9354794) RGD PMID:9354794 NCBI chr  X:140,875,191...140,888,344
Ensembl chr  X:140,878,216...140,888,795
JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 ISO (PMID:20007846) RGD PMID:20007846 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 ISO (PMID:18371931) RGD PMID:18371931 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
digestive tract development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 ALX homeobox 4 ISO MGI:MGI:1857484 (MGI:MGI:1095762|PMID:9268572) RGD PMID:9268572 MGI:MGI:1095762 NCBI chr 3:82,548,959...82,585,531
Ensembl chr 3:82,548,959...82,585,531
JBrowse link
G Cckbr cholecystokinin B receptor ISO
IEA
MGI:MGI:2384535 (MGI:MGI:3606849|PMID:15476751)
GO_REF:0000107
RGD
Ensembl
PMID:15476751 GO_REF:0000107, MGI:MGI:3606849 NCBI chr 1:170,262,218...170,272,298
Ensembl chr 1:170,262,156...170,272,298
JBrowse link
G Ccnb1 cyclin B1 IEP perinatal small intestine RGD PMID:17692466 RGD:2316322 NCBI chr 2:30,782,133...30,791,106
Ensembl chr 2:30,783,915...30,791,221
JBrowse link
G Cd36 CD36 molecule IEP RGD PMID:11595646 RGD:628450 NCBI chr 4:14,150,309...14,191,498
Ensembl chr 4:14,001,761...14,249,749
JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 ISO (PMID:24998929)
MGI:MGI:3530648|MGI:MGI:6144040 (MGI:MGI:5792969|PMID:27602517)
RGD PMID:24998929, PMID:27602517 MGI:MGI:5792969 NCBI chr15:28,612,932...28,672,574
Ensembl chr15:28,612,932...28,672,569
JBrowse link
G Ckmt1 creatine kinase, mitochondrial 1 IEP RGD PMID:8086475 RGD:11565082 NCBI chr 3:113,318,559...113,324,459
Ensembl chr 3:113,318,563...113,324,461
JBrowse link
G Cldn18 claudin 18 ISO MGI:MGI:5007067 (MGI:MGI:5489769|PMID:22437732) RGD PMID:22437732 MGI:MGI:5489769 NCBI chr 8:107,933,725...107,960,656
Ensembl chr 8:107,934,860...107,952,530
JBrowse link
G Clmp CXADR-like membrane protein ISO (PMID:22155368) RGD PMID:22155368 NCBI chr 8:44,846,685...44,975,460
Ensembl chr 8:44,847,157...44,975,457
JBrowse link
G Cobl cordon-bleu WH2 repeat protein ISO
IEA
(PMID:7586755)
GO_REF:0000107
RGD
Ensembl
PMID:7586755 GO_REF:0000107 NCBI chr14:92,341,949...92,497,169
Ensembl chr14:92,342,957...92,577,936
JBrowse link
G Col3a1 collagen type III alpha 1 chain ISO MGI:MGI:1857431 (MGI:MGI:86656|PMID:9050868) RGD PMID:9050868 MGI:MGI:86656 NCBI chr 9:52,023,295...52,059,221
Ensembl chr 9:52,023,295...52,059,217
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:12162855 RGD:727721 NCBI chr 8:62,472,087...62,478,122
Ensembl chr 8:62,472,095...62,478,147
JBrowse link
G Dchs1 dachsous cadherin-related 1 ISO MGI:MGI:4867020 (MGI:MGI:4939936|PMID:21303848) RGD PMID:21303848 MGI:MGI:4939936 NCBI chr 1:170,594,981...170,629,062
Ensembl chr 1:170,594,822...170,628,915
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (MGI:MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:MGI:4946569 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Ep300 E1A binding protein p300 IEP RGD PMID:17916272 RGD:2312267 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Fat4 FAT atypical cadherin 4 ISO MGI:MGI:3846573 (MGI:MGI:4939936|PMID:21303848) RGD PMID:21303848 MGI:MGI:4939936 NCBI chr 2:125,751,818...125,879,398
Ensembl chr 2:125,752,130...125,879,387
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:MGI:1859647 (MGI:MGI:3052435|PMID:15234214) RGD PMID:15234214 MGI:MGI:3052435 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:MGI:2153811 (MGI:MGI:3052435|PMID:15234214) RGD PMID:15234214 MGI:MGI:3052435 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Foxf1 forkhead box F1 ISO (PMID:19500772) RGD PMID:19500772 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Hrh2 histamine receptor H 2 ISO
IEA
MGI:MGI:2182949|MGI:MGI:3607154 (MGI:MGI:1860000|PMID:10862789), (MGI:MGI:3606849|PMID:15476751)
GO_REF:0000107
RGD
Ensembl
PMID:10862789, PMID:15476751 GO_REF:0000107, MGI:MGI:1860000, MGI:MGI:3606849 NCBI chr17:10,912,959...10,931,389
Ensembl chr17:10,921,507...10,952,441
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase ISO (MGI:MGI:3040777|PMID:15067126) RGD PMID:15067126 MGI:MGI:3040777 NCBI chr14:35,072,131...35,149,638
Ensembl chr14:35,072,108...35,149,610
JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 ISO (MGI:MGI:5581372|PMID:24680895) RGD PMID:24680895 MGI:MGI:5581372 NCBI chr 3:101,051,960...101,152,119
Ensembl chr 3:101,051,955...101,152,119
JBrowse link
G Mixl1 Mix paired-like homeobox 1 ISO MGI:MGI:2387828 (MGI:MGI:2181739|PMID:12117810) RGD PMID:12117810 MGI:MGI:2181739 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426
JBrowse link
G Muc4 mucin 4, cell surface associated IEP RGD PMID:15389518 RGD:2303738 NCBI chr11:71,242,973...71,285,217
Ensembl chr11:71,243,334...71,284,939
JBrowse link
G Myocd myocardin ISO
IEA
MGI:MGI:3052940 (MGI:MGI:4941650|PMID:21357509)
GO_REF:0000107
RGD
Ensembl
PMID:21357509 GO_REF:0000107, MGI:MGI:4941650 NCBI chr10:51,682,053...51,781,458
Ensembl chr10:51,683,540...51,778,986
JBrowse link
G Nat2 N-acetyltransferase 2 IEP RGD PMID:18799802 RGD:2303764 NCBI chr16:23,960,709...23,991,570
Ensembl chr16:23,961,067...23,991,570
JBrowse link
G Nipbl NIPBL, cohesin loading factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Nkx2-2 NK2 homeobox 2 ISO MGI:MGI:1932100 (MGI:MGI:3835247|PMID:18987169) RGD PMID:18987169 MGI:MGI:3835247 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
G Nkx2-3 NK2 homeobox 3 ISO MGI:MGI:2386680|MGI:MGI:2448069 (MGI:MGI:1334782|PMID:10207146), (MGI:MGI:1888604|PMID:10926756) RGD PMID:10207146, PMID:10926756 MGI:MGI:1334782, MGI:MGI:1888604 NCBI chr 1:263,361,238...263,371,043
Ensembl chr 1:263,367,266...263,370,219
JBrowse link
G Nkx2-6 NK2 homeobox 6 ISO (PMID:9545560) RGD PMID:9545560 NCBI chr15:51,034,620...51,038,715
Ensembl chr15:51,034,620...51,038,704
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 IEP RGD PMID:11984532 RGD:1625207 NCBI chr 7:30,003,429...30,162,095
Ensembl chr 7:30,003,429...30,162,056
JBrowse link
G Nts neurotensin IEP RGD PMID:8571204 RGD:9743850 NCBI chr 7:44,111,594...44,120,998
Ensembl chr 7:44,111,151...44,121,130
JBrowse link
G Oxtr oxytocin receptor IEP RGD PMID:19003903 RGD:2303961 NCBI chr 4:144,399,326...144,417,598
Ensembl chr 4:144,403,358...144,416,116
JBrowse link
G Pdgfa platelet derived growth factor subunit A ISO MGI:MGI:1859631 (MGI:MGI:1860627|PMID:10903171), (MGI:MGI:5543868|PMID:23938297) RGD PMID:10903171, PMID:23938297 MGI:MGI:1860627, MGI:MGI:5543868 NCBI chr12:17,734,141...17,756,186
Ensembl chr12:17,734,133...17,755,285
JBrowse link
G Pdgfc platelet derived growth factor C ISO MGI:MGI:97527 (MGI:MGI:5543868|PMID:23938297) RGD PMID:23938297 MGI:MGI:5543868 NCBI chr 2:179,952,227...180,126,897
Ensembl chr 2:179,952,227...180,128,283
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 ISO MGI:MGI:2388676 (MGI:MGI:4355651|PMID:19619492) RGD PMID:19619492 MGI:MGI:4355651 NCBI chr12:9,496,044...9,501,211
Ensembl chr12:9,496,044...9,501,213
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting ISO (PMID:11891195) RGD PMID:11891195 NCBI chr10:13,914,057...13,962,008
Ensembl chr10:13,915,214...13,962,008
JBrowse link
G Rb1 RB transcriptional corepressor 1 ISO
IEA
MGI:MGI:1931018|MGI:MGI:3574761 (MGI:MGI:3703460|PMID:17257418)
GO_REF:0000107
RGD
Ensembl
PMID:17257418 GO_REF:0000107, MGI:MGI:3703460 NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342
JBrowse link
G Slc4a2 solute carrier family 4 member 2 IEP RGD PMID:8770049 RGD:9999233 NCBI chr 4:7,264,677...7,282,355
Ensembl chr 4:7,264,683...7,281,223
JBrowse link
G Smo smoothened, frizzled class receptor ISO MGI:MGI:2176255 (MGI:MGI:4355651|PMID:19619492) RGD PMID:19619492 MGI:MGI:4355651 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IEP RGD PMID:12815632 RGD:2302031 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfb2 transforming growth factor, beta 2 IEP RGD PMID:12815632 RGD:2302031 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfb3 transforming growth factor, beta 3 IEP RGD PMID:12815632 RGD:2302031 NCBI chr 6:109,913,757...109,936,217
Ensembl chr 6:109,913,757...109,935,533
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 IEP RGD PMID:12815632 RGD:2302031 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 IEP RGD PMID:12815632 RGD:2302031 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Thra thyroid hormone receptor alpha IEP RGD PMID:17496154 RGD:2314319 NCBI chr10:86,657,285...86,684,935
Ensembl chr10:86,657,285...86,684,933
JBrowse link
G Thra_v1 thyroid hormone receptor alpha, variant 1 IEP RGD PMID:17496154 RGD:2314319
G Thra_v2 thyroid hormone receptor alpha, variant 2 IEP RGD PMID:17496154 RGD:2314319
G Tk1 thymidine kinase 1 IEP RGD PMID:6701043 RGD:2317231 NCBI chr10:106,817,556...106,828,888
Ensembl chr10:106,817,601...106,828,884
JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IDA RGD PMID:9368764 RGD:2306312 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
digestive tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agr2 anterior gradient 2, protein disulphide isomerase family member ISO (MGI:MGI:5634869|PMID:25666625) RGD PMID:25666625 MGI:MGI:5634869 NCBI chr 6:55,465,782...55,487,087
Ensembl chr 6:55,465,782...55,487,714
JBrowse link
G Bcl2 BCL2, apoptosis regulator ISO
IEA
MGI:MGI:2158305 (MGI:MGI:70264|PMID:7812968)
GO_REF:0000107
RGD
Ensembl
PMID:7812968 GO_REF:0000107, MGI:MGI:70264 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 ISO MGI:MGI:2179530 (MGI:MGI:1346729|PMID:10521397) RGD PMID:10521397 MGI:MGI:1346729 NCBI chr 9:41,045,352...41,051,979
Ensembl chr 9:41,045,363...41,052,024
JBrowse link
G Egfr epidermal growth factor receptor ISO MGI:MGI:1856402 (MGI:MGI:74263|PMID:7618084) RGD PMID:7618084 MGI:MGI:74263 NCBI chr14:99,919,485...100,104,136
Ensembl chr14:99,919,485...100,098,796
JBrowse link
G Ephb3 Eph receptor B3 ISO (MGI:MGI:2388849|PMID:12408869) RGD PMID:12408869 MGI:MGI:2388849 NCBI chr11:83,527,960...83,546,742
Ensembl chr11:83,527,962...83,546,674
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO MGI:MGI:1931521 (MGI:MGI:4352984|PMID:19407216) RGD PMID:19407216 MGI:MGI:4352984 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO
IEA
MGI:MGI:2384429 (MGI:MGI:4830408|PMID:20808783)
GO_REF:0000107
RGD
Ensembl
PMID:20808783 GO_REF:0000107, MGI:MGI:4830408 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Il18 interleukin 18 IEP RGD PMID:21088234 RGD:4889157 NCBI chr 8:55,009,666...55,016,286
Ensembl chr 8:54,993,859...55,016,299
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:MGI:2158732 (MGI:MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Percc1 proline and glutamate rich with coiled coil 1 ISO (MGI:MGI:6368375|PMID:31217582) RGD PMID:31217582 MGI:MGI:6368375 NCBI chr10:14,529,231...14,531,682 JBrowse link
G Sfrp1 secreted frizzled-related protein 1 ISO
IEA
MGI:MGI:108078|MGI:MGI:1860298|MGI:MGI:2135272 (MGI:MGI:3839161|PMID:19300477)
GO_REF:0000107
RGD
Ensembl
PMID:19300477 GO_REF:0000107, MGI:MGI:3839161 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:MGI:1860298|MGI:MGI:2135272|MGI:MGI:892014 (MGI:MGI:3839161|PMID:19300477) RGD PMID:19300477 MGI:MGI:3839161 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Sfrp5 secreted frizzled-related protein 5 ISO MGI:MGI:108078|MGI:MGI:2135272|MGI:MGI:892014 (MGI:MGI:3839161|PMID:19300477) RGD PMID:19300477 MGI:MGI:3839161 NCBI chr 1:261,442,108...261,446,570
Ensembl chr 1:261,442,108...261,446,570
JBrowse link
G Shh sonic hedgehog signaling molecule ISO MGI:MGI:1857796 (MGI:MGI:1277744|PMID:9731532) RGD PMID:9731532 MGI:MGI:1277744 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sox10 SRY-box transcription factor 10 ISO MGI:MGI:1857401|MGI:MGI:3511472|MGI:MGI:3511473|MGI:MGI:3511474|MGI:MGI:3511476 (MGI:MGI:3699432|PMID:15843399), (MGI:MGI:56157|PMID:6512238) RGD PMID:6512238, PMID:15843399 MGI:MGI:3699432, MGI:MGI:56157 NCBI chr 7:120,393,238...120,403,523
Ensembl chr 7:120,393,254...120,403,523
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Stx2 syntaxin 2 IMP RGD PMID:12464668 RGD:1298909 NCBI chr12:31,324,203...31,360,249
Ensembl chr12:31,335,372...31,360,254
JBrowse link
G Tp73 tumor protein p73 ISO MGI:MGI:1859911 (MGI:MGI:1354064|PMID:10716451) RGD PMID:10716451 MGI:MGI:1354064 NCBI chr 5:171,355,876...171,415,354
Ensembl chr 5:171,355,876...171,415,354
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:MGI:108078|MGI:MGI:1860298|MGI:MGI:892014 (MGI:MGI:3839161|PMID:19300477) RGD PMID:19300477 MGI:MGI:3839161 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
G Wnt5a Wnt family member 5A ISO MGI:MGI:1857617 (MGI:MGI:3839161|PMID:19300477) RGD PMID:19300477 MGI:MGI:3839161 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO MGI:MGI:2155977 (MGI:MGI:74163|PMID:7670465) RGD PMID:7670465 MGI:MGI:74163 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO MGI:MGI:1857891 (MGI:MGI:3663954|PMID:16806149) RGD PMID:16806149 MGI:MGI:3663954 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:MGI:1927833 (MGI:MGI:3611702|PMID:16308329) RGD PMID:16308329 MGI:MGI:3611702 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgf9 fibroblast growth factor 9 ISO MGI:MGI:2135961 (MGI:MGI:3611702|PMID:16308329) RGD PMID:16308329 MGI:MGI:3611702 NCBI chr15:38,341,657...38,386,945
Ensembl chr15:38,341,089...38,387,316
JBrowse link
G Foxf1 forkhead box F1 ISO MGI:MGI:1347479 (MGI:MGI:3617131|PMID:16439479) RGD PMID:16439479 MGI:MGI:3617131 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Foxf2 forkhead box F2 ISO MGI:MGI:1347470 (MGI:MGI:3617131|PMID:16439479) RGD PMID:16439479 MGI:MGI:3617131 NCBI chr17:34,150,417...34,156,450 JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:1857509 (MGI:MGI:1353327|PMID:10693670) RGD PMID:10693670 MGI:MGI:1353327 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:1856276 (MGI:MGI:1353327|PMID:10693670) RGD PMID:10693670 MGI:MGI:1353327 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Myb MYB proto-oncogene, transcription factor ISO MGI:MGI:2662859 (MGI:MGI:1346939|PMID:10523863) RGD PMID:10523863 MGI:MGI:1346939 NCBI chr 1:16,658,178...16,690,135
Ensembl chr 1:16,659,442...16,687,817
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 ISO (MGI:MGI:3795695|PMID:18519639)
(PMID:18519639)
RGD PMID:18519639 MGI:MGI:3795695 NCBI chr 1:236,031,988...236,313,858
Ensembl chr 1:236,031,988...236,313,858
JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic ISO (MGI:MGI:3813934|PMID:19097194) RGD PMID:19097194 MGI:MGI:3813934 NCBI chr 6:6,427,657...6,436,974
Ensembl chr 6:6,427,657...6,436,974
JBrowse link
G Rarb retinoic acid receptor, beta ISO (PMID:19443732) RGD PMID:19443732 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Rarres2 retinoic acid receptor responder 2 ISO (PMID:19443732) RGD PMID:19443732 NCBI chr 4:78,205,809...78,208,956
Ensembl chr 4:78,205,812...78,208,767
JBrowse link
G Sall1 spalt-like transcription factor 1 ISO (PMID:18280297) RGD PMID:18280297 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Sct secretin IEP RGD PMID:1711228 RGD:729899 NCBI chr 1:214,264,865...214,277,437
Ensembl chr 1:214,264,754...214,265,668
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO
ISS
(PMID:20875417)
GO_REF:0000024
RGD
AgBase
PMID:20875417 GO_REF:0000024 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tnf tumor necrosis factor ISO (PMID:20875417) RGD PMID:20875417 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 ISO MGI:MGI:1859647|MGI:MGI:1927833 (MGI:MGI:3040447|PMID:15017552), (MGI:MGI:3722952|PMID:16618415) RGD PMID:15017552, PMID:16618415 MGI:MGI:3040447, MGI:MGI:3722952 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:MGI:2153811|MGI:MGI:2183527 (MGI:MGI:3722952|PMID:16618415), (MGI:MGI:5285062|PMID:21550054), (MGI:MGI:5317412|PMID:21492869) RGD PMID:16618415, PMID:21492869, PMID:21550054 MGI:MGI:3722952, MGI:MGI:5285062, MGI:MGI:5317412 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Foxf1 forkhead box F1 ISO (PMID:19500772) RGD PMID:19500772 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Gata4 GATA binding protein 4 ISO MGI:MGI:2386764 (MGI:MGI:3590399|PMID:16127717) RGD PMID:16127717 MGI:MGI:3590399 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:1856276 (MGI:MGI:3608164|PMID:16247775) RGD PMID:16247775 MGI:MGI:3608164 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Hlx H2.0-like homeobox ISO MGI:MGI:2182089 (MGI:MGI:79044|PMID:8557196) RGD PMID:8557196 MGI:MGI:79044 NCBI chr13:102,637,967...102,643,376
Ensembl chr13:102,637,769...102,643,223
JBrowse link
G Hnf1b HNF1 homeobox B ISO MGI:MGI:1857856 (MGI:MGI:3807614|PMID:18635606) RGD PMID:18635606 MGI:MGI:3807614 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
G Id2 inhibitor of DNA binding 2 ISO
ISS
(MGI:MGI:4399020|PMID:16888283)
GO_REF:0000024
RGD
UniProt
PMID:16888283 GO_REF:0000024, MGI:MGI:4399020 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:1858523|PMID:10821773) RGD PMID:10821773 MGI:MGI:1858523 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO (PMID:19242925), (PMID:8291537) RGD PMID:8291537, PMID:19242925 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Ovol2 ovo-like zinc finger 2 ISO MGI:MGI:3522498 (MGI:MGI:3618450|PMID:16423343) RGD PMID:16423343 MGI:MGI:3618450 NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:1860627|PMID:10903171)
Ensembl
UniProt
RGD
PMID:10903171 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1860627 NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:MGI:3767234 (MGI:MGI:5285062|PMID:21550054) RGD PMID:21550054 MGI:MGI:5285062 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Shh sonic hedgehog signaling molecule ISO
IEA
MGI:MGI:1934261 (MGI:MGI:1858523|PMID:10821773)
GO_REF:0000107
RGD
Ensembl
PMID:10821773 GO_REF:0000107, MGI:MGI:1858523 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Shox2 short stature homeobox 2 ISO MGI:MGI:3605739 (MGI:MGI:3604918|PMID:16141225) RGD PMID:16141225 MGI:MGI:3604918 NCBI chr 2:164,118,175...164,126,783
Ensembl chr 2:164,118,191...164,126,783
JBrowse link
G Six2 SIX homeobox 2 ISO (MGI:MGI:4365896|PMID:19660448) RGD PMID:19660448 MGI:MGI:4365896 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276
JBrowse link
G Sox11 SRY-box transcription factor 11 ISO
ISS
(MGI:MGI:3052265|PMID:15254231)
GO_REF:0000024
RGD
UniProt
PMID:15254231 GO_REF:0000024, MGI:MGI:3052265 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Tcf21 transcription factor 21 IMP RGD PMID:11804032 RGD:727206 NCBI chr 1:23,906,717...23,909,576
Ensembl chr 1:23,906,717...23,909,566
JBrowse link
G Tcf7 transcription factor 7 ISO MGI:MGI:1202879 (MGI:MGI:3042541|PMID:15057272) RGD PMID:15057272 MGI:MGI:3042541 NCBI chr10:37,616,033...37,646,027
Ensembl chr10:37,617,279...37,645,802
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO MGI:MGI:98507 (MGI:MGI:3042541|PMID:15057272) RGD PMID:15057272 MGI:MGI:3042541 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps52 VPS52 subunit of GARP complex ISO (MGI:MGI:5449815|PMID:23142660) RGD PMID:23142660 MGI:MGI:5449815 NCBI chr20:5,431,997...5,441,736
Ensembl chr20:5,432,004...5,441,706
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 ISO (PMID:19500772) RGD PMID:19500772 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B ISO
IEA
MGI:MGI:1857709 (MGI:MGI:1861876|PMID:10921901)
GO_REF:0000107
RGD
Ensembl
PMID:10921901 GO_REF:0000107, MGI:MGI:1861876 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:2148567 (MGI:MGI:3820452|PMID:18692041)
GO_REF:0000107
RGD
Ensembl
PMID:18692041 GO_REF:0000107, MGI:MGI:3820452 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:MGI:3822451 (MGI:MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Foxf1 forkhead box F1 ISO MGI:MGI:1929432 (MGI:MGI:2135612|PMID:11493558) RGD PMID:11493558 MGI:MGI:2135612 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Foxp4 forkhead box P4 ISO MGI:MGI:3055161 (MGI:MGI:3054576|PMID:15361625) RGD PMID:15361625 MGI:MGI:3054576 NCBI chr 9:15,068,378...15,124,962
Ensembl chr 9:15,068,399...15,125,318
JBrowse link
G Gata4 GATA binding protein 4 ISO MGI:MGI:2179443|MGI:MGI:2386265 (MGI:MGI:87488|PMID:9136932), (MGI:MGI:87489|PMID:9136933) RGD PMID:9136932, PMID:9136933 MGI:MGI:87488, MGI:MGI:87489 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Nckap1 NCK-associated protein 1 ISO MGI:MGI:3578145 (MGI:MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Shh sonic hedgehog signaling molecule ISO
IEA
MGI:MGI:1857796 (MGI:MGI:1277744|PMID:9731532)
GO_REF:0000107
RGD
Ensembl
PMID:9731532 GO_REF:0000107, MGI:MGI:1277744 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smad2 SMAD family member 2 ISO MGI:MGI:1201674 (MGI:MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:MGI:3618021 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:MGI:108051 (MGI:MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:MGI:2179440|MGI:MGI:3717118|MGI:MGI:4356113 (MGI:MGI:4355651|PMID:19619492), (MGI:MGI:4415813|PMID:18462699), (MGI:MGI:4946573|PMID:21305474) RGD PMID:18462699, PMID:19619492, PMID:21305474 MGI:MGI:4355651, MGI:MGI:4415813, MGI:MGI:4946573 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dact1 dishevelled-binding antagonist of beta-catenin 1 ISO (MGI:MGI:4457465|PMID:20145239) RGD PMID:20145239 MGI:MGI:4457465 NCBI chr 6:93,740,440...93,751,003
Ensembl chr 6:93,740,586...93,749,809
JBrowse link
G Hoxa13 homeo box A13 IMP RGD PMID:17161201 RGD:1599527 Ensembl chr 4:82,228,017...82,229,397 JBrowse link
G Hoxd13 homeo box D13 IMP RGD PMID:17161201 RGD:1599527 NCBI chr 3:61,590,376...61,593,692
Ensembl chr 3:61,590,376...61,593,692
JBrowse link
G Tcf7 transcription factor 7 ISO MGI:MGI:1202879 (MGI:MGI:3042541|PMID:15057272) RGD PMID:15057272 MGI:MGI:3042541 NCBI chr10:37,616,033...37,646,027
Ensembl chr10:37,617,279...37,645,802
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO MGI:MGI:98507 (MGI:MGI:3042541|PMID:15057272) RGD PMID:15057272 MGI:MGI:3042541 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
endodermal digestive tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:MGI:2183527 (MGI:MGI:5285062|PMID:21550054) RGD PMID:21550054 MGI:MGI:5285062 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Id2 inhibitor of DNA binding 2 ISO
ISS
(PMID:16888283)
GO_REF:0000024
RGD
UniProt
PMID:16888283 GO_REF:0000024 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:MGI:3767234 (MGI:MGI:5285062|PMID:21550054) RGD PMID:21550054 MGI:MGI:5285062 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO (MGI:MGI:4946573|PMID:21305474) RGD PMID:21305474 MGI:MGI:4946573 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
enteric smooth muscle cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B ISO (MGI:MGI:1330409|PMID:10021336) RGD PMID:10021336 MGI:MGI:1330409 NCBI chr15:88,004,775...88,036,354
Ensembl chr15:88,006,977...88,036,354
JBrowse link
exocrine pancreas development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cela1 chymotrypsin like elastase 1 ISO
IEA
MGI:MGI:2148594 (MGI:MGI:3703452|PMID:17222338)
GO_REF:0000107
RGD
Ensembl
PMID:17222338 GO_REF:0000107, MGI:MGI:3703452 NCBI chr 7:142,305,337...142,318,621
Ensembl chr 7:142,305,338...142,318,620
JBrowse link
G Igf1 insulin-like growth factor 1 ISO MGI:MGI:1926485 (MGI:MGI:2387729|PMID:12101187) RGD PMID:12101187 MGI:MGI:2387729 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Igf1r insulin-like growth factor 1 receptor ISO MGI:MGI:1926486 (MGI:MGI:2387729|PMID:12101187) RGD PMID:12101187 MGI:MGI:2387729 NCBI chr 1:128,924,921...129,213,816
Ensembl chr 1:128,924,966...129,206,516
JBrowse link
G Igf2 insulin-like growth factor 2 ISO
IEA
MGI:MGI:2677156 (MGI:MGI:2387729|PMID:12101187)
GO_REF:0000107
RGD
Ensembl
PMID:12101187 GO_REF:0000107, MGI:MGI:2387729 NCBI chr 1:215,828,102...215,839,081
Ensembl chr 1:215,828,102...215,846,911
JBrowse link
G Insr insulin receptor ISO
IEA
MGI:MGI:1857204 (MGI:MGI:2387729|PMID:12101187)
GO_REF:0000107
RGD
Ensembl
PMID:12101187 GO_REF:0000107, MGI:MGI:2387729 NCBI chr12:1,682,527...1,816,414
Ensembl chr12:1,680,957...1,816,414
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 ISO MGI:MGI:2388676 (MGI:MGI:3610256|PMID:16126192) RGD PMID:16126192 MGI:MGI:3610256 NCBI chr12:9,496,044...9,501,211
Ensembl chr12:9,496,044...9,501,213
JBrowse link
G Ptf1a pancreas associated transcription factor 1a IDA PMID:10768861 UniProt PMID:10768861 RGD:8554373 NCBI chr17:86,199,623...86,201,477
Ensembl chr17:86,199,623...86,201,477
JBrowse link
G Srp54a signal recognition particle 54A ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 6:75,996,629...76,035,768
Ensembl chr 6:75,996,643...76,034,083
JBrowse link
G Wls Wnt ligand secretion mediator ISO (MGI:MGI:4834980|PMID:20614471) RGD PMID:20614471 MGI:MGI:4834980 NCBI chr 2:266,315,036...266,431,220
Ensembl chr 2:266,315,036...266,432,558
JBrowse link
G Xbp1 X-box binding protein 1 ISO MGI:MGI:2386788 (MGI:MGI:3768452|PMID:16362047) RGD PMID:16362047 MGI:MGI:3768452 NCBI chr14:85,753,736...85,758,820
Ensembl chr14:85,753,760...85,758,145
JBrowse link
foregut morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch receptor 1 ISO MGI:MGI:2684314|MGI:MGI:2684317 (MGI:MGI:3603059|PMID:16107537) RGD PMID:16107537 MGI:MGI:3603059 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
hindgut development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift172 intraflagellar transport 172 ISO MGI:MGI:4821824 (MGI:MGI:5285455|PMID:21653639) RGD PMID:21653639 MGI:MGI:5285455 NCBI chr 6:26,390,686...26,485,459 JBrowse link
hindgut morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:1857509|MGI:MGI:95729 (MGI:MGI:2148409|PMID:11485934) RGD PMID:11485934 MGI:MGI:2148409 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:95728 (MGI:MGI:2148409|PMID:11485934) RGD PMID:11485934 MGI:MGI:2148409 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Shh sonic hedgehog signaling molecule ISO
IEA
MGI:MGI:1857796 (MGI:MGI:2148409|PMID:11485934)
GO_REF:0000107
RGD
Ensembl
PMID:11485934 GO_REF:0000107, MGI:MGI:2148409 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:1857617 (MGI:MGI:3822053|PMID:18804104)
GO_REF:0000107
RGD
Ensembl
PMID:18804104 GO_REF:0000107, MGI:MGI:3822053 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 ISO
IEA
MGI:MGI:3714051 (MGI:MGI:5002772|PMID:21383503)
GO_REF:0000107
RGD
Ensembl
PMID:21383503 GO_REF:0000107, MGI:MGI:5002772 NCBI chr 4:33,890,353...33,943,219
Ensembl chr 4:33,890,349...33,943,211
JBrowse link
G Cdh1 cadherin 1 ISO (MGI:MGI:5449145|PMID:22766025) RGD PMID:22766025 MGI:MGI:5449145 NCBI chr19:38,768,467...38,838,395
Ensembl chr19:38,768,467...38,838,395
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:108015 (MGI:MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:MGI:4946569 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Il6st interleukin 6 signal transducer ISO
IEA
(PMID:25731159)
GO_REF:0000107
(MGI:MGI:5629863|PMID:25731159)
RGD
Ensembl
PMID:25731159 GO_REF:0000107, MGI:MGI:5629863 NCBI chr 2:44,279,199...44,319,427
Ensembl chr 2:44,289,393...44,314,944
JBrowse link
G Klf5 Kruppel-like factor 5 ISO MGI:MGI:3806635 (MGI:MGI:5471906|PMID:23266329) RGD PMID:23266329 MGI:MGI:5471906 NCBI chr15:83,703,796...83,722,921
Ensembl chr15:83,703,791...83,722,921
JBrowse link
G Mir3545 microRNA 3545 ISO (MGI:MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:MGI:4946569 NCBI chr 6:136,704,947...136,705,061
Ensembl chr 6:136,704,947...136,705,061
JBrowse link
G Mir7-1 microRNA 7-1 ISO (MGI:MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:MGI:4946569 NCBI chr17:6,675,016...6,675,112
Ensembl chr17:6,675,016...6,675,112
JBrowse link
G Nkx3-2 NK3 homeobox 2 ISO MGI:MGI:2177178 (MGI:MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:MGI:4946569 NCBI chr14:73,813,531...73,818,489
Ensembl chr14:73,813,528...73,815,757
JBrowse link
G Prdm1 PR/SET domain 1 ISO MGI:MGI:3605483|MGI:MGI:3605621 (MGI:MGI:5014435|PMID:21670299) RGD PMID:21670299 MGI:MGI:5014435 NCBI chr20:49,464,921...49,556,623
Ensembl chr20:49,464,919...49,556,518
JBrowse link
G Spdef SAM pointed domain containing ets transcription factor ISO MGI:MGI:4410321 (MGI:MGI:4410300|PMID:19549527) RGD PMID:19549527 MGI:MGI:4410300 NCBI chr20:7,292,823...7,308,053
Ensembl chr20:7,292,824...7,307,284
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO
IEA
(PMID:25731159)
GO_REF:0000107
(MGI:MGI:5629863|PMID:25731159)
RGD
Ensembl
PMID:25731159 GO_REF:0000107, MGI:MGI:5629863 NCBI chr 3:153,547,807...153,595,643
Ensembl chr 3:153,580,861...153,595,642
JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase ISO MGI:MGI:4391656 (MGI:MGI:5498602|PMID:23726973) RGD PMID:23726973 MGI:MGI:5498602 NCBI chr 4:159,635,145...159,654,108
Ensembl chr 4:159,635,153...159,654,063
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO
IEA
(PMID:25731159)
GO_REF:0000107
(MGI:MGI:5629863|PMID:25731159)
RGD
Ensembl
PMID:25731159 GO_REF:0000107, MGI:MGI:5629863 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
G Yipf6 Yip1 domain family, member 6 ISO MGI:MGI:4839074 (MGI:MGI:5437477|PMID:22802641) RGD PMID:22802641 MGI:MGI:5437477 NCBI chr  X:68,625,760...68,637,780
Ensembl chr  X:68,626,185...68,637,416
JBrowse link
intestinal epithelial cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfa2t2 CBFA2/RUNX1 partner transcriptional co-repressor 2 ISO (MGI:MGI:5629454|PMID:25398765) RGD PMID:25398765 MGI:MGI:5629454 NCBI chr 3:149,935,731...150,041,545
Ensembl chr 3:149,935,731...150,038,257
JBrowse link
G Cdx2 caudal type homeo box 2 ISO (MGI:MGI:5301472|PMID:22015720) RGD PMID:22015720 MGI:MGI:5301472 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Gata4 GATA binding protein 4 ISO (PMID:9566909) RGD PMID:9566909 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gata5 GATA binding protein 5 ISO (PMID:9566909) RGD PMID:9566909 NCBI chr 3:175,701,278...175,709,465
Ensembl chr 3:175,701,280...175,709,465
JBrowse link
G Gata6 GATA binding protein 6 ISO
IEA
(PMID:9566909)
GO_REF:0000107
RGD
Ensembl
PMID:9566909 GO_REF:0000107 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
JBrowse link
G Ptk6 protein tyrosine kinase 6 ISO (MGI:MGI:3640030|PMID:16782882) RGD PMID:16782882 MGI:MGI:3640030 NCBI chr 3:176,698,305...176,706,896
Ensembl chr 3:176,698,305...176,706,896
JBrowse link
G Sav1 salvador family WW domain containing protein 1 ISO MGI:MGI:3790763 (MGI:MGI:3785211|PMID:18369314) RGD PMID:18369314 MGI:MGI:3785211 NCBI chr 6:92,376,470...92,398,678
Ensembl chr 6:92,376,093...92,398,525
JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin-dependent kinase inhibitor 1A IEP RGD PMID:20466941 RGD:8662316 NCBI chr20:6,348,422...6,358,864
Ensembl chr20:6,351,458...6,358,864
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO
IEA
MGI:MGI:2384429 (MGI:MGI:4830408|PMID:20808783)
GO_REF:0000107
RGD
Ensembl
PMID:20808783 GO_REF:0000107, MGI:MGI:4830408 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Hoxa5 homeo box A5 ISO MGI:MGI:2150397 (MGI:MGI:1349338|PMID:10564089) RGD PMID:10564089 MGI:MGI:1349338
G Tyms thymidylate synthetase IEP RGD PMID:1260861 RGD:2317427 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
midgut development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IEP RGD PMID:15964596 RGD:1643113 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IEP RGD PMID:15964596 RGD:1643113 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Arg2 arginase 2 IEP RGD PMID:10050048 RGD:4144052 NCBI chr 6:102,311,097...102,338,406
Ensembl chr 6:102,311,116...102,338,520
JBrowse link
G Asl argininosuccinate lyase IEP RGD PMID:9544996 RGD:4139911 NCBI chr12:30,160,922...30,178,348
Ensembl chr12:30,165,694...30,178,341
JBrowse link
G Ass1 argininosuccinate synthase 1 IEP RGD PMID:9544996 RGD:4139911 NCBI chr 3:10,327,411...10,375,847
Ensembl chr 3:10,327,414...10,375,826
JBrowse link
G Casp1 caspase 1 IEP RGD PMID:12396474 RGD:5130192 NCBI chr 8:2,605,743...2,614,637
Ensembl chr 8:2,604,962...2,614,631
JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 IEP RGD PMID:9544996 RGD:4139911 NCBI chr 9:74,113,437...74,236,274
Ensembl chr 9:74,124,016...74,236,274
JBrowse link
G Ctnnb1 catenin beta 1 IEP RGD PMID:17356920 RGD:2289844 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Dab1 DAB adaptor protein 1 IEP RGD PMID:19946030 RGD:2317766 NCBI chr 5:123,154,360...124,279,170
Ensembl chr 5:123,905,166...124,280,115
JBrowse link
G Egfr epidermal growth factor receptor IEP RGD PMID:7926492 RGD:10395256 NCBI chr14:99,919,485...100,104,136
Ensembl chr14:99,919,485...100,098,796
JBrowse link
G Foxf1 forkhead box F1 ISO (PMID:19500772) RGD PMID:19500772 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 IEP RGD PMID:8620869 RGD:2326125 NCBI chr 2:200,452,623...200,480,785
Ensembl chr 2:200,452,624...200,479,423
JBrowse link
G Otc ornithine carbamoyltransferase IEP RGD PMID:9544996 RGD:4139911 NCBI chr  X:13,524,804...13,601,074
Ensembl chr  X:13,524,607...13,601,069
JBrowse link
G Reg1a regenerating family member 1 alpha IEP RGD PMID:7720628 RGD:9850133 NCBI chr 4:109,497,962...109,500,626
Ensembl chr 4:109,497,962...109,501,082
JBrowse link
G Reg3b regenerating family member 3 beta IEP RGD PMID:7720628 RGD:9850133 NCBI chr 4:109,467,272...109,470,510
Ensembl chr 4:109,467,272...109,470,510
JBrowse link
G Reln reelin IEP RGD PMID:19946030 RGD:2317766 NCBI chr 4:9,347,533...9,774,257
Ensembl chr 4:9,347,528...9,773,670
JBrowse link
G Rxra retinoid X receptor alpha IEP RGD PMID:15964596 RGD:1643113 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Smo smoothened, frizzled class receptor ISO
ISS
IEA
(MGI:MGI:5142377|PMID:11517919)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:11517919 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5142377 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:1857617 (MGI:MGI:3833777|PMID:19100728)
GO_REF:0000107
RGD
Ensembl
PMID:19100728 GO_REF:0000107, MGI:MGI:3833777 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 ISO
IEA
MGI:MGI:2149672 (MGI:MGI:3804618|PMID:18173746)
GO_REF:0000107
RGD
Ensembl
PMID:18173746 GO_REF:0000107, MGI:MGI:3804618 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp5 secreted frizzled-related protein 5 ISO (PMID:18981481) RGD PMID:18981481 NCBI chr 1:261,442,108...261,446,570
Ensembl chr 1:261,442,108...261,446,570
JBrowse link
pharynx development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crkl CRK like proto-oncogene, adaptor protein ISO MGI:MGI:5510713 (MGI:MGI:6102264|PMID:25565927) RGD PMID:25565927 MGI:MGI:6102264 NCBI chr11:87,338,606...87,356,644
Ensembl chr11:87,778,312...87,815,043
JBrowse link
G Foxe1 forkhead box E1 ISO (PMID:15494458) RGD PMID:15494458 NCBI chr 5:61,954,549...61,957,357
Ensembl chr 5:61,954,549...61,957,357
JBrowse link
G Tbx2 T-box transcription factor 2 ISO (MGI:MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:MGI:3487212 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
JBrowse link
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-3 NK2 homeobox 3 ISO MGI:MGI:2448069 (MGI:MGI:1888604|PMID:10926756) RGD PMID:10926756 MGI:MGI:1888604 NCBI chr 1:263,361,238...263,371,043
Ensembl chr 1:263,367,266...263,370,219
JBrowse link
posterior midgut development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B ISO MGI:MGI:1856149 (MGI:MGI:77408|PMID:8582288) RGD PMID:8582288 MGI:MGI:77408 NCBI chr15:88,004,775...88,036,354
Ensembl chr15:88,006,977...88,036,354
JBrowse link
stomach development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 ISO (MGI:MGI:6160687|PMID:29700203) RGD PMID:29700203 MGI:MGI:6160687 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
stomach neuroendocrine cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI:MGI:1857470 (MGI:MGI:3804618|PMID:18173746) RGD PMID:18173746 MGI:MGI:3804618 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxl1 forkhead box L1 ISO MGI:MGI:2178230 (MGI:MGI:893314|PMID:9203584) RGD PMID:9203584 MGI:MGI:893314 NCBI chr19:53,054,887...53,058,624
Ensembl chr19:53,055,745...53,056,770
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    multicellular organismal process 9055
      multicellular organism development 5735
        system development 5272
          digestive system development 179
            digestive tract development + 164
            exocrine pancreas development 10
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            digestive system development 179
              digestive tract development + 164
              exocrine pancreas development 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.