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ONTOLOGY REPORT - ANNOTATIONS


Term:digestive system development
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Accession:GO:0055123 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.


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digestive system development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BARX1 BARX homeobox 1 JBrowse link 9 93,133,691 93,212,391 RGD:9068941
G GIP gastric inhibitory polypeptide JBrowse link 17 8,554,736 8,561,849 RGD:9068941
G HIP1R huntingtin interacting protein 1 related JBrowse link 12 124,672,109 124,700,726 RGD:9068941
G WDPCP WD repeat containing planar cell polarity effector JBrowse link 2A 64,323,118 64,785,322 RGD:9068941
G WDR19 WD repeat domain 19 JBrowse link 4 39,365,204 39,470,074 RGD:9068941
cloaca development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHI1 Abelson helper integration site 1 JBrowse link 6 137,149,457 137,366,731 RGD:9068941
cloacal septation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 14 52,821,872 52,828,781 RGD:9068941
G TP63 tumor protein p63 JBrowse link 3 195,172,810 195,473,085 RGD:9068941
G WNT11 Wnt family member 11 JBrowse link 11 74,540,025 74,560,024 RGD:9068941
determination of digestive tract left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCDC103 coiled-coil domain containing 103 JBrowse link 17 12,591,698 12,595,664 RGD:9068941
G CCDC39 coiled-coil domain containing 39 JBrowse link 3 185,811,581 185,878,362 RGD:9068941
G CCDC40 coiled-coil domain containing 40 JBrowse link 17 79,656,287 79,722,565 RGD:9068941
G DNAAF1 dynein axonemal assembly factor 1 JBrowse link 16 84,153,949 84,184,991 RGD:9068941
G MEGF8 multiple EGF like domains 8 JBrowse link 19 47,805,307 47,858,636 RGD:9068941
G ZIC3 Zic family member 3 JBrowse link X 136,954,024 136,968,240 RGD:9068941
determination of intestine left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NPHP3 nephrocystin 3 JBrowse link 3 137,229,994 137,271,458 RGD:9068941
determination of stomach left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NPHP3 nephrocystin 3 JBrowse link 3 137,229,994 137,271,458 RGD:9068941
digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALX4 ALX homeobox 4 JBrowse link 11 44,714,503 44,729,758 RGD:9068941
G CCKBR cholecystokinin B receptor JBrowse link 11 6,075,816 6,088,145 RGD:9068941
G CCNB1 cyclin B1 JBrowse link 5 46,394,362 46,405,332 RGD:9068941
G CHD8 chromodomain helicase DNA binding protein 8 JBrowse link 14 20,281,422 20,326,361 RGD:9068941
G CLDN18 claudin 18 JBrowse link 3 142,478,031 142,512,548 RGD:9068941
G CLMP CXADR like membrane protein JBrowse link 11 121,824,389 121,942,055 RGD:9068941
G COBL cordon-bleu WH2 repeat protein JBrowse link 7 51,894,468 52,114,849 RGD:9068941
G COL3A1 collagen type III alpha 1 chain JBrowse link 2B 194,204,613 194,242,956 RGD:9068941
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 JBrowse link 15 73,284,566 73,290,636 RGD:9068941
G DCHS1 dachsous cadherin-related 1 JBrowse link 11 6,436,082 6,456,464 RGD:9068941
G FAT4 FAT atypical cadherin 4 JBrowse link 4 128,637,516 128,814,413 RGD:9068941
G FGFR2 fibroblast growth factor receptor 2 JBrowse link 10 121,469,735 121,588,815 RGD:9068941
G FOXF1 forkhead box F1 JBrowse link 16 86,515,150 86,519,949 RGD:9068941
G HRH2 histamine receptor H2 JBrowse link 5 177,928,039 177,955,714 RGD:9068941
G KIT KIT proto-oncogene, receptor tyrosine kinase JBrowse link 4 75,761,946 75,844,473 RGD:9068941
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 JBrowse link 11 27,232,801 27,291,571 RGD:9068941
G MIXL1 Mix paired-like homeobox JBrowse link 1 206,671,344 206,679,904 RGD:9068941
G MYOCD myocardin JBrowse link 17 43,578,967 43,681,659 RGD:9068941
G NIPBL NIPBL cohesin loading factor JBrowse link 5 78,585,649 78,772,665 RGD:9068941
G NKX2-2 NK2 homeobox 2 JBrowse link 20 21,429,388 21,432,492 RGD:9068941
G NKX2-6 NK2 homeobox 6 JBrowse link 8 19,884,480 19,888,643 RGD:9068941
G OXTR oxytocin receptor JBrowse link 3 8,946,493 8,961,823 RGD:9068941
G PDGFC platelet derived growth factor C JBrowse link 4 160,921,353 161,132,308 RGD:9068941
G PDX1 pancreatic and duodenal homeobox 1 JBrowse link 13 27,545,855 27,553,118 RGD:9068941
G PKD1 polycystin 1, transient receptor potential channel interacting JBrowse link 16 2,176,778 2,185,337 RGD:9068941
G RB1 RB transcriptional corepressor 1 JBrowse link 13 48,155,608 48,326,396 RGD:9068941
G SLC4A2 solute carrier family 4 member 2 JBrowse link 7 154,799,256 154,815,919 RGD:9068941
G TGFB1 transforming growth factor beta 1 JBrowse link 19 46,831,659 46,852,973 RGD:9068941
G TGFB3 transforming growth factor beta 3 JBrowse link 14 75,359,505 75,382,412 RGD:9068941
G TGFBR2 transforming growth factor beta receptor 2 JBrowse link 3 30,854,071 30,941,378 RGD:9068941
digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGR2 anterior gradient 2, protein disulphide isomerase family member JBrowse link 7 16,773,281 16,785,721 RGD:9068941
G BBS7 Bardet-Biedl syndrome 7 JBrowse link 4 125,161,804 125,208,350 RGD:9068941
G BCL2 BCL2 apoptosis regulator JBrowse link 18 59,797,184 59,993,298 RGD:9068941
G EGFR epidermal growth factor receptor JBrowse link 7 56,048,212 56,117,642 RGD:9068941
G EPHB3 EPH receptor B3 JBrowse link 3 190,093,880 190,104,905 RGD:9068941
G GLI1 GLI family zinc finger 1 JBrowse link 12 31,710,051 31,722,473 RGD:9068941
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 60,552,374 60,604,885 RGD:9068941
G NODAL nodal growth differentiation factor JBrowse link 10 69,433,959 69,443,972 RGD:9068941
G SFRP1 secreted frizzled related protein 1 JBrowse link 8 37,956,423 38,001,865 RGD:9068941
G SFRP2 secreted frizzled related protein 2 JBrowse link 4 157,944,733 157,953,258 RGD:9068941
G SOX10 SRY-box transcription factor 10 JBrowse link 22 36,712,128 36,724,192 RGD:9068941
G STRA6 signaling receptor and transporter of retinol STRA6 JBrowse link 15 72,740,868 72,773,802 RGD:9068941
G VANGL2 VANGL planar cell polarity protein 2 JBrowse link 1 139,676,595 139,704,281 RGD:9068941
embryonic digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADA adenosine deaminase JBrowse link 20 42,044,613 42,076,868 RGD:9068941
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 JBrowse link 15 55,237,101 55,349,851 RGD:9068941
G CXCL8 C-X-C motif chemokine ligand 8 JBrowse link 4 56,285,026 56,288,308 RGD:9068941
G FGF9 fibroblast growth factor 9 JBrowse link 13 21,273,333 21,307,198 RGD:9068941
G FOXF2 forkhead box F2 JBrowse link 6 1,327,682 1,332,813 RGD:9068941
G GLI2 GLI family zinc finger 2 JBrowse link 2B 121,242,932 121,499,411 RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 7 42,056,566 42,322,865 RGD:9068941
G PCSK5 proprotein convertase subtilisin/kexin type 5 JBrowse link 9 74,745,187 75,224,347 RGD:9068941
G PKDCC protein kinase domain containing, cytoplasmic JBrowse link 2A 42,999,423 43,009,337 RGD:9068941
G RARB retinoic acid receptor beta JBrowse link 3 25,660,850 25,830,372 RGD:9068941
G RARRES2 retinoic acid receptor responder 2 JBrowse link 7 154,106,275 154,109,635 RGD:9068941
G SALL1 spalt like transcription factor 1 JBrowse link 16 50,274,081 50,280,239 RGD:9068941
G SCT secretin JBrowse link 11 661,461 662,008 RGD:9068941
G STRA6 signaling receptor and transporter of retinol STRA6 JBrowse link 15 72,740,868 72,773,802 RGD:9068941
G TGFB2 transforming growth factor beta 2 JBrowse link 1 198,758,718 198,856,853 RGD:9068941
G TNF tumor necrosis factor JBrowse link 6 32,126,618 32,129,389 RGD:9068941
embryonic digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FGF10 fibroblast growth factor 10 JBrowse link 5 71,028,324 71,111,713 RGD:9068941
G FGFR2 fibroblast growth factor receptor 2 JBrowse link 10 121,469,735 121,588,815 RGD:9068941
G FOXF1 forkhead box F1 JBrowse link 16 86,515,150 86,519,949 RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 7 42,056,566 42,322,865 RGD:9068941
G HLX H2.0 like homeobox JBrowse link 1 201,500,470 201,506,222 RGD:9068941
G HNF1B HNF1 homeobox B JBrowse link 17 19,633,424 19,691,863 RGD:9068941
G ID2 inhibitor of DNA binding 2 JBrowse link 2A 8,847,776 8,850,720 RGD:9068941
G IHH Indian hedgehog signaling molecule JBrowse link 2B 224,905,488 224,917,887 RGD:9068941
G NIPBL NIPBL cohesin loading factor JBrowse link 5 78,585,649 78,772,665 RGD:9068941
G OVOL2 ovo like zinc finger 2 JBrowse link 20 17,961,749 17,996,364 RGD:9068941
G PDGFRA platelet derived growth factor receptor alpha JBrowse link 4 76,200,871 76,271,105 RGD:9068941
G RBPMS2 RNA binding protein, mRNA processing factor 2 JBrowse link 15 61,970,407 62,034,027 RGD:9068941
G SHH sonic hedgehog signaling molecule JBrowse link 7 159,116,966 159,126,660 RGD:9068941
G SHOX2 short stature homeobox 2 JBrowse link 3 163,190,277 163,199,239 RGD:9068941
G SIX2 SIX homeobox 2 JBrowse link 2A 46,040,067 46,044,029 RGD:9068941
G SOX11 SRY-box transcription factor 11 JBrowse link 2A 5,840,399 5,841,762 RGD:9068941
G TCF21 transcription factor 21 JBrowse link 6 135,754,896 135,761,294 RGD:9068941
G TCF7 transcription factor 7 JBrowse link 5 135,671,630 135,704,417 RGD:9068941
embryonic ectodermal digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G VPS52 VPS52 subunit of GARP complex JBrowse link 6 33,936,683 33,958,404 RGD:9068941
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXF1 forkhead box F1 JBrowse link 16 86,515,150 86,519,949 RGD:9068941
embryonic foregut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACVR2B activin A receptor type 2B JBrowse link 3 38,633,097 38,671,843 RGD:9068941
G CTNNB1 catenin beta 1 JBrowse link 3 41,372,368 41,414,030 RGD:9068941
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 JBrowse link 2B 120,521,139 120,687,209 RGD:9068941
G FOXF1 forkhead box F1 JBrowse link 16 86,515,150 86,519,949 RGD:9068941
G GATA4 GATA binding protein 4 RGD:9068941
G SHH sonic hedgehog signaling molecule JBrowse link 7 159,116,966 159,126,660 RGD:9068941
G SMAD2 SMAD family member 2 JBrowse link 18 44,572,213 44,669,008 RGD:9068941
G SMAD3 SMAD family member 3 JBrowse link 15 64,284,949 64,414,185 RGD:9068941
G SOX17 SRY-box transcription factor 17 JBrowse link 8 48,257,287 48,259,808 RGD:9068941
embryonic hindgut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DACT1 dishevelled binding antagonist of beta catenin 1 JBrowse link 14 57,498,901 57,510,019 RGD:9068941
G HOXD13 homeobox D13 JBrowse link 2B 181,081,518 181,085,295 RGD:9068941
G TCF7 transcription factor 7 JBrowse link 5 135,671,630 135,704,417 RGD:9068941
endodermal digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ID2 inhibitor of DNA binding 2 JBrowse link 2A 8,847,776 8,850,720 RGD:9068941
G SOX17 SRY-box transcription factor 17 JBrowse link 8 48,257,287 48,259,808 RGD:9068941
enteric smooth muscle cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EDNRB endothelin receptor type B JBrowse link 13 78,153,026 78,177,281 RGD:9068941
exocrine pancreas development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELA1 chymotrypsin like elastase 1 JBrowse link 12 38,291,831 38,310,331 RGD:9068941
G IGF2 insulin like growth factor 2 JBrowse link 11 2,202,764 2,228,890 RGD:9068941
G INSR insulin receptor JBrowse link 19 7,255,444 7,411,916 RGD:9068941
G PDX1 pancreatic and duodenal homeobox 1 JBrowse link 13 27,545,855 27,553,118 RGD:9068941
G PTF1A pancreas associated transcription factor 1a JBrowse link 10 23,731,808 23,732,880 RGD:9068941
G SRP54 signal recognition particle 54 JBrowse link 14 33,920,330 33,966,023 RGD:9068941
G WLS Wnt ligand secretion mediator JBrowse link 1 69,291,878 69,425,652 RGD:9068941
G XBP1 X-box binding protein 1 JBrowse link 22 27,566,423 27,572,627 RGD:9068941
foregut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NOTCH1 notch receptor 1 JBrowse link 9 136,544,639 136,595,511 RGD:9068941
hindgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IFT172 intraflagellar transport 172 JBrowse link 2A 27,536,534 27,580,406 RGD:9068941
hindgut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLI2 GLI family zinc finger 2 JBrowse link 2B 121,242,932 121,499,411 RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 7 42,056,566 42,322,865 RGD:9068941
G SHH sonic hedgehog signaling molecule JBrowse link 7 159,116,966 159,126,660 RGD:9068941
G WNT5A Wnt family member 5A JBrowse link 3 56,617,006 56,639,367 RGD:9068941
intestinal epithelial cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 JBrowse link 7 7,260,615 7,355,079 RGD:9068941
G KLF5 Kruppel like factor 5 JBrowse link 13 73,062,147 73,084,730 RGD:9068941
G NKX3-2 NK3 homeobox 2 JBrowse link 4 13,258,949 13,262,458 RGD:9068941
G PRDM1 PR/SET domain 1 JBrowse link 6 107,773,229 107,796,815 RGD:9068941
G SPDEF SAM pointed domain containing ETS transcription factor JBrowse link 6 35,202,983 35,209,639 RGD:9068941
G TIGAR TP53 induced glycolysis regulatory phosphatase JBrowse link 12 4,353,272 4,386,758 RGD:9068941
G YIPF6 Yip1 domain family member 6 JBrowse link X 67,803,914 67,879,812 RGD:9068941
intestinal epithelial cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CBFA2T2 CBFA2/RUNX1 partner transcriptional co-repressor 2 JBrowse link 20 31,002,486 31,078,304 RGD:9068941
G CDX2 caudal type homeobox 2 JBrowse link 13 27,585,194 27,593,632 RGD:9068941
G GATA4 GATA binding protein 4 RGD:9068941
G GATA5 GATA binding protein 5 JBrowse link 20 60,147,020 60,158,901 RGD:9068941
G GATA6 GATA binding protein 6 JBrowse link 18 19,046,132 19,078,398 RGD:9068941
G NPY neuropeptide Y JBrowse link 7 24,566,963 24,574,657 RGD:9068941
G PTK6 protein tyrosine kinase 6 JBrowse link 20 61,453,386 61,462,951 RGD:9068941
G PYY peptide YY JBrowse link 17 13,595,066 13,608,832 RGD:9068941
G SAV1 salvador family WW domain containing protein 1 JBrowse link 14 49,525,687 49,560,347 RGD:9068941
intestinal epithelial cell maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDKN1A cyclin dependent kinase inhibitor 1A JBrowse link 6 37,436,963 37,445,599 RGD:9068941
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 60,552,374 60,604,885 RGD:9068941
G HOXA5 homeobox A5 JBrowse link 7 27,385,175 27,388,990 RGD:9068941
G TYMS thymidylate synthetase JBrowse link 18 17,295,182 17,310,311 RGD:9068941
midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 JBrowse link 15 55,237,101 55,349,851 RGD:9068941
G ASS1 argininosuccinate synthase 1 JBrowse link 9 130,219,993 130,276,036 RGD:9068941
G CPS1 carbamoyl-phosphate synthase 1 JBrowse link 2B 216,136,857 216,337,728 RGD:9068941
G DAB1 DAB adaptor protein 1 JBrowse link 1 57,989,170 59,234,011 RGD:9068941
G EGFR epidermal growth factor receptor JBrowse link 7 56,048,212 56,117,642 RGD:9068941
G FOXF1 forkhead box F1 JBrowse link 16 86,515,150 86,519,949 RGD:9068941
G OTC ornithine carbamoyltransferase JBrowse link X 38,505,232 38,575,819 RGD:9068941
G SMO smoothened, frizzled class receptor JBrowse link 7 133,668,523 133,693,048 RGD:9068941
G WNT5A Wnt family member 5A JBrowse link 3 56,617,006 56,639,367 RGD:9068941
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES1 hes family bHLH transcription factor 1 JBrowse link 3 201,749,044 201,751,591 RGD:9068941
negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SFRP5 secreted frizzled related protein 5 JBrowse link 10 97,877,790 97,882,846 RGD:9068941
pharynx development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CRKL CRK like proto-oncogene, adaptor protein JBrowse link 22 19,632,359 19,668,858 RGD:9068941
G FOXE1 forkhead box E1 JBrowse link 9 97,065,256 97,068,012 RGD:9068941
G TBX2 T-box transcription factor 2 JBrowse link 17 60,617,169 60,631,148 RGD:9068941
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NKX2-3 NK2 homeobox 3 JBrowse link 10 99,640,589 99,643,924 RGD:9068941
posterior midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EDNRB endothelin receptor type B JBrowse link 13 78,153,026 78,177,281 RGD:9068941
G RET ret proto-oncogene JBrowse link 10 43,256,437 43,286,340 RGD:9068941
stomach neuroendocrine cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ASCL1 achaete-scute family bHLH transcription factor 1 JBrowse link 12 103,931,707 103,934,554 RGD:9068941
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXL1 forkhead box L1 JBrowse link 16 86,580,646 86,583,593 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15758
    multicellular organismal process 7176
      multicellular organism development 5210
        system development 4662
          digestive system development 141
            digestive tract development + 129
            exocrine pancreas development 8
Path 2
Term Annotations click to browse term
  biological_process 15758
    developmental process 6130
      anatomical structure development 5679
        multicellular organism development 5210
          system development 4662
            digestive system development 141
              digestive tract development + 129
              exocrine pancreas development 8
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.