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ONTOLOGY REPORT - ANNOTATIONS


Term:digestive system development
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Accession:GO:0055123 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.


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digestive system development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Barx1 BARX homeobox 1 JBrowse link NW_004955515 4,230,713 4,234,189 RGD:9068941
G Gip gastric inhibitory polypeptide JBrowse link NW_004955451 12,390,938 12,396,599 RGD:9068941
G Hip1r huntingtin interacting protein 1 related JBrowse link NW_004955482 5,885,807 5,896,386 RGD:9068941
G Wdpcp WD repeat containing planar cell polarity effector JBrowse link NW_004955424 20,723,592 21,114,801 RGD:9068941
G Wdr19 WD repeat domain 19 JBrowse link NW_004955443 8,053,847 8,122,918 RGD:9068941
cloaca development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link NW_004955439 1,277,185 1,460,296 RGD:9068941
cloacal septation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
G Tp63 tumor protein p63 JBrowse link NW_004955420 18,178,639 18,384,786 RGD:9068941
G Wnt11 Wnt family member 11 JBrowse link NW_004955414 15,674,478 15,694,758 RGD:9068941
determination of digestive tract left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccdc103 coiled-coil domain containing 103 JBrowse link NW_004955451 17,690,148 17,693,285 RGD:9068941
G Ccdc39 coiled-coil domain containing 39 JBrowse link NW_004955420 9,689,076 9,727,806 RGD:9068941
G Ccdc40 coiled-coil domain containing 40 JBrowse link NW_004955506 2,783,837 2,840,248 RGD:9068941
G Dnaaf1 dynein axonemal assembly factor 1 JBrowse link NW_004955564 132,497 149,399 RGD:9068941
G Megf8 multiple EGF like domains 8 JBrowse link NW_004955555 549,921 591,978 RGD:9068941
G Zic3 Zic family member 3 JBrowse link NW_004955489 7,560,684 7,571,739 RGD:9068941
determination of intestine left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nphp3 nephrocystin 3 JBrowse link NW_004955501 5,799,879 5,837,022 RGD:9068941
determination of stomach left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nphp3 nephrocystin 3 JBrowse link NW_004955501 5,799,879 5,837,022 RGD:9068941
digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alx4 ALX homeobox 4 JBrowse link NW_004955422 3,278,615 3,290,799 RGD:9068941
G Cckbr cholecystokinin B receptor JBrowse link NW_004955414 22,001,351 22,011,275 RGD:9068941
G Ccnb1 cyclin B1 JBrowse link NW_004955446 140,661 149,500 RGD:9068941
G Chd8 chromodomain helicase DNA binding protein 8 JBrowse link NW_004955550 2,115,649 2,175,687 RGD:9068941
G Cldn18 claudin 18 JBrowse link NW_004955501 962,188 991,922 RGD:9068941
G Clmp CXADR like membrane protein JBrowse link NW_004955412 23,876,003 23,984,603 RGD:9068941
G Col3a1 collagen type III alpha 1 chain JBrowse link NW_004955403 9,720,831 9,758,019 RGD:9068941
G Dchs1 dachsous cadherin-related 1 JBrowse link NW_004955414 22,331,590 22,365,761 RGD:9068941
G Fat4 FAT atypical cadherin 4 JBrowse link NW_004955428 15,621,333 15,812,167 RGD:9068941
G Fgfr2 fibroblast growth factor receptor 2 JBrowse link NW_004955551 2,321,190 2,427,000 RGD:9068941
G Foxf1 forkhead box F1 JBrowse link NW_004955541 1,341,715 1,345,397 RGD:9068941
G Hrh2 histamine receptor H2 JBrowse link NW_004955408 28,186,316 28,225,146 RGD:9068941
G Kit KIT proto-oncogene, receptor tyrosine kinase JBrowse link NW_004955447 16,149,014 16,226,151 RGD:9068941
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 JBrowse link NW_004955476 6,611,102 6,629,294 RGD:9068941
G LOC102010850 cytochrome P450 1A1 JBrowse link NW_004955450 3,183,958 3,189,488 RGD:9068941
G Mixl1 Mix paired-like homeobox JBrowse link NW_004955489 418,650 422,428 RGD:9068941
G Myocd myocardin JBrowse link NW_004955467 4,653,065 4,743,438 RGD:9068941
G Nipbl NIPBL cohesin loading factor JBrowse link NW_004955426 21,666,958 21,841,515 RGD:9068941
G Nkx2-2 NK2 homeobox 2 JBrowse link NW_004955415 29,263,741 29,268,259 RGD:9068941
G Nkx2-6 NK2 homeobox 6 JBrowse link NW_004955403 46,831,758 46,836,358 RGD:9068941
G Oxtr oxytocin receptor JBrowse link NW_004955561 340,387 354,499 RGD:9068941
G Pdgfc platelet derived growth factor C JBrowse link NW_004955471 10,318,683 10,500,624 RGD:9068941
G Pdx1 pancreatic and duodenal homeobox 1 JBrowse link NW_004955497 7,281,886 7,307,969 RGD:9068941
G Pkd1 polycystin 1, transient receptor potential channel interacting JBrowse link NW_004955442 15,132,555 15,178,377 RGD:9068941
G Rb1 RB transcriptional corepressor 1 JBrowse link NW_004955431 1,960,765 2,124,576 RGD:9068941
G Slc4a2 solute carrier family 4 member 2 JBrowse link NW_004955491 5,498,472 5,513,389 RGD:9068941
G Tgfb1 transforming growth factor beta 1 JBrowse link NW_004955555 274,405 288,441 RGD:9068941
G Tgfb3 transforming growth factor beta 3 JBrowse link NW_004955438 33,129 55,180 RGD:9068941
G Tgfbr2 transforming growth factor beta receptor 2 JBrowse link NW_004955430 21,919,338 21,999,688 RGD:9068941
digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agr2 anterior gradient 2, protein disulphide isomerase family member JBrowse link NW_004955410 19,984,768 19,995,446 RGD:9068941
G Bbs7 Bardet-Biedl syndrome 7 JBrowse link NW_004955428 18,682,072 18,724,560 RGD:9068941
G Bcl2 BCL2 apoptosis regulator JBrowse link NW_004955402 46,911,125 47,084,214 RGD:9068941
G Egfr epidermal growth factor receptor JBrowse link NW_004955456 321,222 456,431 RGD:9068941
G Ephb3 EPH receptor B3 JBrowse link NW_004955420 22,900,588 22,919,924 RGD:9068941
G Gli1 GLI family zinc finger 1 JBrowse link NW_004955458 5,181,761 5,193,500 RGD:9068941
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link NW_004955466 8,000,311 8,022,497 RGD:9068941
G Nodal nodal growth differentiation factor JBrowse link NW_004955437 20,828,448 20,835,486 RGD:9068941
G Percc1 proline and glutamate rich with coiled coil 1 JBrowse link NW_004955442 15,800,513 15,803,478 RGD:9068941
G Sfrp1 secreted frizzled related protein 1 JBrowse link NW_004955536 1,663,721 1,702,678 RGD:9068941
G Sfrp2 secreted frizzled related protein 2 JBrowse link NW_004955471 8,103,937 8,112,596 RGD:9068941
G Sox10 SRY-box transcription factor 10 JBrowse link NW_004955413 24,313,311 24,323,112 RGD:9068941
G Stra6 signaling receptor and transporter of retinol STRA6 JBrowse link NW_004955450 3,579,081 3,602,538 RGD:9068941
G Vangl2 VANGL planar cell polarity protein 2 JBrowse link NW_004955468 12,162,084 12,189,322 RGD:9068941
embryonic digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ada adenosine deaminase JBrowse link NW_004955445 12,696,096 12,717,488 RGD:9068941
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 JBrowse link NW_004955450 16,406,578 16,453,048 RGD:9068941
G Cxcl8 C-X-C motif chemokine ligand 8 JBrowse link NW_004955474 247,326 250,355 RGD:9068941
G Fgf9 fibroblast growth factor 9 JBrowse link NW_004955497 2,199,424 2,232,088 RGD:9068941
G Foxf2 forkhead box F2 JBrowse link NW_004955465 11,740,374 11,744,619 RGD:9068941
G Gli2 GLI family zinc finger 2 JBrowse link NW_004955459 8,892,917 9,124,672 RGD:9068941
G Gli3 GLI family zinc finger 3 JBrowse link NW_004955460 1,528,457 1,805,584 RGD:9068941
G Pcsk5 proprotein convertase subtilisin/kexin type 5 JBrowse link NW_004955512 2,914,834 3,333,440 RGD:9068941
G Pkdcc protein kinase domain containing, cytoplasmic JBrowse link NW_004955441 9,462,530 9,471,446 RGD:9068941
G Rarb retinoic acid receptor beta JBrowse link NW_004955430 17,067,536 17,457,558 RGD:9068941
G Rarres2 retinoic acid receptor responder 2 JBrowse link NW_004955491 4,954,809 4,957,724 RGD:9068941
G Sall1 spalt like transcription factor 1 JBrowse link NW_004955433 9,146,074 9,161,171 RGD:9068941
G Sct secretin JBrowse link NW_004955476 11,433,857 11,434,662 RGD:9068941
G Stra6 signaling receptor and transporter of retinol STRA6 JBrowse link NW_004955450 3,579,081 3,602,538 RGD:9068941
G Tgfb2 transforming growth factor beta 2 JBrowse link NW_004955406 174,949 249,248 RGD:9068941
G Tnf tumor necrosis factor JBrowse link NW_004955437 117,267 119,899 RGD:9068941
embryonic digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fgf10 fibroblast growth factor 10 JBrowse link NW_004955446 18,163,117 18,244,840 RGD:9068941
G Fgfr2 fibroblast growth factor receptor 2 JBrowse link NW_004955551 2,321,190 2,427,000 RGD:9068941
G Foxf1 forkhead box F1 JBrowse link NW_004955541 1,341,715 1,345,397 RGD:9068941
G Gli3 GLI family zinc finger 3 JBrowse link NW_004955460 1,528,457 1,805,584 RGD:9068941
G Hlx H2.0 like homeobox JBrowse link NW_004955520 2,937,131 2,941,170 RGD:9068941
G Hnf1b HNF1 homeobox B JBrowse link NW_004955451 320,283 371,420 RGD:9068941
G Id2 inhibitor of DNA binding 2 JBrowse link NW_004955487 878,326 880,783 RGD:9068941
G Ihh Indian hedgehog signaling molecule JBrowse link NW_004955453 14,376,665 14,382,536 RGD:9068941
G Nipbl NIPBL cohesin loading factor JBrowse link NW_004955426 21,666,958 21,841,515 RGD:9068941
G Ovol2 ovo like zinc finger 2 JBrowse link NW_004955415 26,825,284 26,843,438 RGD:9068941
G Pdgfra platelet derived growth factor receptor alpha JBrowse link NW_004955447 16,570,652 16,613,410 RGD:9068941
G Rbpms2 RNA binding protein, mRNA processing factor 2 JBrowse link NW_004955450 10,746,708 10,770,540 RGD:9068941
G Shh sonic hedgehog signaling molecule JBrowse link NW_004955491 8,647,133 8,657,381 RGD:9068941
G Shox2 short stature homeobox 2 JBrowse link NW_004955448 8,937,656 8,947,890 RGD:9068941
G Six2 SIX homeobox 2 JBrowse link NW_004955441 12,029,530 12,033,214 RGD:9068941
G Sox11 SRY-box transcription factor 11 JBrowse link NW_004955487 2,678,961 2,680,869 RGD:9068941
G Tcf21 transcription factor 21 JBrowse link NW_004955439 2,617,562 2,620,613 RGD:9068941
G Tcf7 transcription factor 7 JBrowse link NW_004955408 5,362,423 5,388,684 RGD:9068941
embryonic ectodermal digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vps52 VPS52 subunit of GARP complex JBrowse link NW_004955437 1,820,355 1,833,615 RGD:9068941
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxf1 forkhead box F1 JBrowse link NW_004955541 1,341,715 1,345,397 RGD:9068941
embryonic foregut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acvr2b activin A receptor type 2B JBrowse link NW_004955427 25,438,652 25,467,360 RGD:9068941
G Ctnnb1 catenin beta 1 JBrowse link NW_004955420 29,030,716 29,047,447 RGD:9068941
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 JBrowse link NW_004955459 9,641,926 9,783,718 RGD:9068941
G Foxf1 forkhead box F1 JBrowse link NW_004955541 1,341,715 1,345,397 RGD:9068941
G Gata4 GATA binding protein 4 JBrowse link NW_004955403 52,958,318 53,029,267 RGD:9068941
G Shh sonic hedgehog signaling molecule JBrowse link NW_004955491 8,647,133 8,657,381 RGD:9068941
G Smad2 SMAD family member 2 JBrowse link NW_004955402 33,131,760 33,217,144 RGD:9068941
G Smad3 SMAD family member 3 JBrowse link NW_004955450 8,747,651 8,842,003 RGD:9068941
G Sox17 SRY-box transcription factor 17 JBrowse link NW_004955454 13,689,403 13,690,019 RGD:9068941
embryonic hindgut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dact1 dishevelled binding antagonist of beta catenin 1 JBrowse link NW_004955466 12,367,760 12,374,141 RGD:9068941
G Hoxd13 homeobox D13 JBrowse link NW_004955403 20,568,314 20,575,579 RGD:9068941
G Tcf7 transcription factor 7 JBrowse link NW_004955408 5,362,423 5,388,684 RGD:9068941
endodermal digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Id2 inhibitor of DNA binding 2 JBrowse link NW_004955487 878,326 880,783 RGD:9068941
G Sox17 SRY-box transcription factor 17 JBrowse link NW_004955454 13,689,403 13,690,019 RGD:9068941
enteric smooth muscle cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ednrb endothelin receptor type B JBrowse link NW_004955404 29,394,253 29,425,358 RGD:9068941
exocrine pancreas development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cela1 chymotrypsin like elastase 1 JBrowse link NW_004955547 1,810,680 1,823,938 RGD:9068941
G Igf2 insulin like growth factor 2 JBrowse link NW_004955422 13,880,525 13,907,963 RGD:9068941
G Insr insulin receptor JBrowse link NW_004955563 1,867,400 2,011,845 RGD:9068941
G Pdx1 pancreatic and duodenal homeobox 1 JBrowse link NW_004955497 7,281,886 7,307,969 RGD:9068941
G Ptf1a pancreas associated transcription factor 1a JBrowse link NW_004955429 5,807,804 5,809,522 RGD:9068941
G Srp54 signal recognition particle 54 JBrowse link NW_004955409 25,977,226 26,016,351 RGD:9068941
G Wls Wnt ligand secretion mediator JBrowse link NW_004955423 23,374,401 23,465,308 RGD:9068941
G Xbp1 X-box binding protein 1 JBrowse link NW_004955455 3,037,885 3,041,827 RGD:9068941
foregut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Notch1 notch receptor 1 JBrowse link NW_004955513 4,225,939 4,264,875 RGD:9068941
hindgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ift172 intraflagellar transport 172 JBrowse link NW_004955469 9,418,599 9,455,026 RGD:9068941
hindgut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gli2 GLI family zinc finger 2 JBrowse link NW_004955459 8,892,917 9,124,672 RGD:9068941
G Gli3 GLI family zinc finger 3 JBrowse link NW_004955460 1,528,457 1,805,584 RGD:9068941
G Shh sonic hedgehog signaling molecule JBrowse link NW_004955491 8,647,133 8,657,381 RGD:9068941
G Wnt5a Wnt family member 5A JBrowse link NW_004955430 5,304,817 5,325,684 RGD:9068941
intestinal epithelial cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 JBrowse link NW_004955432 14,298,873 14,353,824 RGD:9068941
G Klf5 Kruppel like factor 5 JBrowse link NW_004955404 33,642,604 33,665,445 RGD:9068941
G Nkx3-2 NK3 homeobox 2 JBrowse link NW_004955480 10,212,929 10,215,814 RGD:9068941
G Prdm1 PR/SET domain 1 JBrowse link NW_004955411 31,434,503 31,455,995 RGD:9068941
G Spdef SAM pointed domain containing ETS transcription factor JBrowse link NW_004955437 2,667,499 2,679,940 RGD:9068941
G Tigar TP53 induced glycolysis regulatory phosphatase JBrowse link NW_004955413 2,129,719 2,153,873 RGD:9068941
G Yipf6 Yip1 domain family member 6 JBrowse link NW_004955475 8,085,017 8,101,624 RGD:9068941
intestinal epithelial cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbfa2t2 CBFA2/RUNX1 partner transcriptional co-repressor 2 JBrowse link NW_004955422 27,671,215 27,809,384 RGD:9068941
G Cdx2 caudal type homeobox 2 JBrowse link NW_004955497 7,316,372 7,321,627 RGD:9068941
G Gata4 GATA binding protein 4 JBrowse link NW_004955403 52,958,318 53,029,267 RGD:9068941
G Gata5 GATA binding protein 5 JBrowse link NW_004955528 1,595,231 1,604,979 RGD:9068941
G Npy neuropeptide Y JBrowse link NW_004955410 26,348,388 26,355,232 RGD:9068941
G Ptk6 protein tyrosine kinase 6 JBrowse link NW_004955528 687,996 695,596 RGD:9068941
G Sav1 salvador family WW domain containing protein 1 JBrowse link NW_004955409 12,200,721 12,221,520 RGD:9068941
intestinal epithelial cell maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdkn1a cyclin dependent kinase inhibitor 1A JBrowse link NW_004955437 6,254,638 6,261,278 RGD:9068941
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link NW_004955466 8,000,311 8,022,497 RGD:9068941
G Hoxa5 homeobox A5 JBrowse link NW_004955410 28,835,795 28,838,244 RGD:9068941
G Tyms thymidylate synthetase JBrowse link NW_004955402 9,295,862 9,304,952 RGD:9068941
midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 JBrowse link NW_004955450 16,406,578 16,453,048 RGD:9068941
G Ass1 argininosuccinate synthase 1 JBrowse link NW_004955513 443,372 485,190 RGD:9068941
G Cps1 carbamoyl-phosphate synthase 1 JBrowse link NW_004955457 4,848,116 4,961,384 RGD:9068941
G Dab1 DAB adaptor protein 1 JBrowse link NW_004955464 2,325,529 2,721,497 RGD:9068941
G Egfr epidermal growth factor receptor JBrowse link NW_004955456 321,222 456,431 RGD:9068941
G Foxf1 forkhead box F1 JBrowse link NW_004955541 1,341,715 1,345,397 RGD:9068941
G Otc ornithine carbamoyltransferase JBrowse link NW_004955601 481,524 543,176 RGD:9068941
G Smo smoothened, frizzled class receptor JBrowse link NW_004955479 9,963,377 9,991,670 RGD:9068941
G Wnt5a Wnt family member 5A JBrowse link NW_004955430 5,304,817 5,325,684 RGD:9068941
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hes1 hes family bHLH transcription factor 1 JBrowse link NW_004955420 14,565,921 14,568,447 RGD:9068941
negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sfrp5 secreted frizzled related protein 5 JBrowse link NW_004955507 3,836,607 3,841,910 RGD:9068941
pharynx development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crkl CRK like proto-oncogene, adaptor protein JBrowse link NW_004955442 19,358,202 19,388,552 RGD:9068941
G Foxe1 forkhead box E1 JBrowse link NW_004955419 27,616,606 27,619,908 RGD:9068941
G Tbx2 T-box transcription factor 2 JBrowse link NW_004955451 2,458,612 2,466,264 RGD:9068941
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nkx2-3 NK2 homeobox 3 JBrowse link NW_004955507 5,454,871 5,457,247 RGD:9068941
posterior midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ednrb endothelin receptor type B JBrowse link NW_004955404 29,394,253 29,425,358 RGD:9068941
G Ret ret proto-oncogene JBrowse link NW_004955546 1,221,995 1,252,147 RGD:9068941
stomach neuroendocrine cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link NW_004955405 37,941,243 37,943,641 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14616
    multicellular organismal process 6713
      multicellular organism development 5040
        system development 4518
          digestive system development 138
            digestive tract development + 126
            exocrine pancreas development 8
Path 2
Term Annotations click to browse term
  biological_process 14616
    developmental process 5921
      anatomical structure development 5490
        multicellular organism development 5040
          system development 4518
            digestive system development 138
              digestive tract development + 126
              exocrine pancreas development 8
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.