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ONTOLOGY REPORT - ANNOTATIONS


Term:digestive system development
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Accession:GO:0055123 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.


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digestive system development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BARX1 BARX homeobox 1 JBrowse link 1 98,036,444 98,039,818 RGD:13508589
G HIP1R huntingtin interacting protein 1 related JBrowse link 26 6,623,583 6,639,107 RGD:13508589
G WDPCP WD repeat containing planar cell polarity effector JBrowse link 10 62,894,818 63,316,555 RGD:13508589
cloaca development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHI1 Abelson helper integration site 1 JBrowse link 1 27,966,101 28,199,163 RGD:13508589
cloacal septation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
G TP63 tumor protein p63 JBrowse link 34 21,766,861 21,985,095 RGD:13508589
G WNT11 Wnt family member 11 JBrowse link 21 22,442,496 22,463,040 RGD:13508589
determination of digestive tract left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCDC103 coiled-coil domain containing 103 JBrowse link 9 18,581,544 18,585,939 RGD:13508589
G CCDC40 coiled-coil domain containing 40 JBrowse link 9 1,616,029 1,656,043 RGD:13508589
G DNAAF1 dynein axonemal assembly factor 1 JBrowse link 5 68,184,532 68,205,651 RGD:13508589
G MEGF8 multiple EGF like domains 8 JBrowse link 1 112,020,344 112,063,120 RGD:13508589
G ZIC3 Zic family member 3 JBrowse link X 107,822,002 107,833,582 RGD:13508589
digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALX4 ALX homeobox 4 JBrowse link 18 44,922,042 44,967,557 RGD:13508589
G CCKBR cholecystokinin B receptor JBrowse link 21 29,602,066 29,606,343 RGD:13508589
G CLMP CXADR like membrane protein JBrowse link 5 11,255,054 11,289,578 RGD:13508589
G COL3A1 collagen type III alpha 1 chain JBrowse link 36 30,488,250 30,526,367 RGD:13508589
G DCHS1 dachsous cadherin-related 1 JBrowse link 21 29,927,713 29,955,742 RGD:13508589
G FAT4 FAT atypical cadherin 4 JBrowse link 19 15,157,595 15,332,821 RGD:13508589
G KIT KIT proto-oncogene, receptor tyrosine kinase JBrowse link 13 47,108,442 47,190,935 RGD:13508589
G MYOCD myocardin JBrowse link 5 36,674,476 36,774,435 RGD:13508589
G NIPBL NIPBL cohesin loading factor JBrowse link 4 71,583,118 71,780,986 RGD:13508589
G NKX2-6 NK2 homeobox 6 JBrowse link 25 33,781,294 33,787,460 RGD:13508589
G PDGFC platelet derived growth factor C JBrowse link 15 54,143,637 54,239,962 RGD:13508589
G PDX1 pancreatic and duodenal homeobox 1 JBrowse link 25 11,741,863 11,746,885 RGD:13508589
digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGR2 anterior gradient 2, protein disulphide isomerase family member JBrowse link 14 31,303,784 31,316,752 RGD:13508589
G BCL2 BCL2 apoptosis regulator JBrowse link 1 13,733,849 13,900,653 RGD:13508589
G EGFR epidermal growth factor receptor JBrowse link 18 5,983,669 6,044,092 RGD:13508589
G EPHB3 EPH receptor B3 JBrowse link 34 17,422,746 17,433,769 RGD:13508589
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 8 36,614,045 36,656,692 RGD:13508589
G NODAL nodal growth differentiation factor JBrowse link 4 21,366,828 21,374,623 RGD:13508589
G SFRP2 secreted frizzled related protein 2 JBrowse link 15 51,541,197 51,548,765 RGD:13508589
G SOX10 SRY-box transcription factor 10 JBrowse link 10 26,680,441 26,690,530 RGD:13508589
G STRA6 signaling receptor and transporter of retinol STRA6 JBrowse link 30 37,331,834 37,359,449 RGD:13508589
embryonic digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CXCL8 C-X-C motif chemokine ligand 8 JBrowse link 13 62,435,035 62,438,354 RGD:13508589
G FOXF2 forkhead box F2 JBrowse link 35 1,841,165 1,846,649 RGD:13508589
G GLI2 GLI family zinc finger 2 JBrowse link 19 29,128,401 29,383,324 RGD:13508589
G PCSK5 proprotein convertase subtilisin/kexin type 5 JBrowse link 1 82,088,090 82,506,131 RGD:13508589
G PKDCC protein kinase domain containing, cytoplasmic JBrowse link 17 33,659,352 33,669,237 RGD:13508589
G RARB retinoic acid receptor beta JBrowse link 23 18,207,253 18,931,128 RGD:13508589
G RARRES2 retinoic acid receptor responder 2 JBrowse link 16 14,671,345 14,675,000 RGD:13508589
G SALL1 spalt like transcription factor 1 JBrowse link 2 64,242,742 64,260,021 RGD:13508589
G STRA6 signaling receptor and transporter of retinol STRA6 JBrowse link 30 37,331,834 37,359,449 RGD:13508589
G TGFB2 transforming growth factor beta 2 JBrowse link 38 13,430,832 13,511,655 RGD:13508589
G TNF tumor necrosis factor JBrowse link 12 1,074,561 1,076,425 RGD:13508589
embryonic digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FGF10 fibroblast growth factor 10 JBrowse link 4 65,851,130 65,930,944 RGD:13508589
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
G HLX H2.0 like homeobox JBrowse link 38 15,538,744 15,543,686 RGD:13508589
G HNF1B HNF1 homeobox B JBrowse link 9 37,437,992 37,493,200 RGD:13508589
G NIPBL NIPBL cohesin loading factor JBrowse link 4 71,583,118 71,780,986 RGD:13508589
G PDGFRA platelet derived growth factor receptor alpha JBrowse link 13 46,729,722 46,775,828 RGD:13508589
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:13508589
G SHOX2 short stature homeobox 2 JBrowse link 23 51,484,696 51,492,586 RGD:13508589
G SIX2 SIX homeobox 2 JBrowse link 10 47,399,152 47,403,503 RGD:13508589
G TCF21 transcription factor 21 JBrowse link 1 26,856,281 26,859,654 RGD:13508589
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXF1 forkhead box F1 JBrowse link 5 66,343,776 66,347,785 RGD:13508589
embryonic foregut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACVR2B activin A receptor type 2B JBrowse link 23 8,211,555 8,225,596 RGD:13508589
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
G FOXF1 forkhead box F1 JBrowse link 5 66,343,776 66,347,785 RGD:13508589
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:13508589
G SMAD3 SMAD family member 3 JBrowse link 30 31,246,313 31,360,098 RGD:13508589
G SOX17 SRY-box transcription factor 17 JBrowse link 29 5,979,092 5,981,504 RGD:13508589
endodermal digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SOX17 SRY-box transcription factor 17 JBrowse link 29 5,979,092 5,981,504 RGD:13508589
enteric smooth muscle cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EDNRB endothelin receptor type B JBrowse link 22 31,415,324 31,438,772 RGD:13508589
exocrine pancreas development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G INSR insulin receptor JBrowse link 20 52,017,261 52,136,061 RGD:13508589
G PDX1 pancreatic and duodenal homeobox 1 JBrowse link 25 11,741,863 11,746,885 RGD:13508589
G SRP54 signal recognition particle 54 JBrowse link 8 13,800,275 13,837,799 RGD:13508589
foregut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NOTCH1 notch receptor 1 JBrowse link 9 48,975,972 49,018,985 RGD:13508589
hindgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IFT172 intraflagellar transport 172 JBrowse link 17 21,389,462 21,426,970 RGD:13508589
hindgut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLI2 GLI family zinc finger 2 JBrowse link 19 29,128,401 29,383,324 RGD:13508589
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:13508589
G WNT5A Wnt family member 5A JBrowse link 20 34,756,430 34,790,937 RGD:13508589
intestinal epithelial cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 JBrowse link 14 22,863,861 22,902,232 RGD:13508589
G KLF5 Kruppel like factor 5 JBrowse link 22 27,163,179 27,185,241 RGD:13508589
G NKX3-2 NK3 homeobox 2 JBrowse link 3 66,543,046 66,546,779 RGD:13508589
G PRDM1 PR/SET domain 1 JBrowse link 12 63,454,242 63,495,278 RGD:13508589
G SPDEF SAM pointed domain containing ETS transcription factor JBrowse link 12 3,814,806 3,831,724 RGD:13508589
G TIGAR TP53 induced glycolysis regulatory phosphatase JBrowse link 27 40,521,751 40,549,304 RGD:13508589
intestinal epithelial cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CBFA2T2 CBFA2/RUNX1 partner transcriptional co-repressor 2 JBrowse link 24 22,722,902 22,871,098 RGD:13508589
G CDX2 caudal type homeobox 2 JBrowse link 25 11,701,134 11,707,883 RGD:13508589
G GATA4 GATA binding protein 4 JBrowse link 25 26,126,172 26,211,474 RGD:13508589
G GATA5 GATA binding protein 5 JBrowse link 24 46,417,404 46,427,617 RGD:13508589
G SAV1 salvador family WW domain containing protein 1 JBrowse link 8 27,034,606 27,061,926 RGD:13508589
intestinal epithelial cell maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 8 36,614,045 36,656,692 RGD:13508589
G HOXA5 homeobox A5 JBrowse link 14 40,315,409 40,319,001 RGD:13508589
midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXF1 forkhead box F1 JBrowse link 5 66,343,776 66,347,785 RGD:13508589
G WNT5A Wnt family member 5A JBrowse link 20 34,756,430 34,790,937 RGD:13508589
negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SFRP5 secreted frizzled related protein 5 JBrowse link 28 10,994,180 10,999,552 RGD:13508589
pharynx development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CRKL CRK like proto-oncogene, adaptor protein JBrowse link 26 30,542,276 30,582,479 RGD:13508589
G TBX2 T-box transcription factor 2 JBrowse link 9 35,237,323 35,245,066 RGD:13508589
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NKX2-3 NK2 homeobox 3 JBrowse link 28 12,466,319 12,469,467 RGD:13508589
posterior midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EDNRB endothelin receptor type B JBrowse link 22 31,415,324 31,438,772 RGD:13508589
stomach neuroendocrine cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ASCL1 achaete-scute family bHLH transcription factor 1 JBrowse link 15 41,694,021 41,696,933 RGD:13508589
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXL1 forkhead box L1 JBrowse link 5 66,281,543 66,287,357 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14457
    multicellular organismal process 4891
      multicellular organism development 3132
        system development 2866
          digestive system development 81
            digestive tract development + 76
            exocrine pancreas development 3
Path 2
Term Annotations click to browse term
  biological_process 14457
    developmental process 3812
      anatomical structure development 3522
        multicellular organism development 3132
          system development 2866
            digestive system development 81
              digestive tract development + 76
              exocrine pancreas development 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.