Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:digestive system development
go back to main search page
Accession:GO:0055123 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.


show annotations for term's descendants       view all columns           Sort by:
 
digestive system development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BARX1 BARX homeobox 1 JBrowse link 9 93,951,627 93,955,355 RGD:2290271
G GIP gastric inhibitory polypeptide JBrowse link 17 48,958,554 48,968,596 RGD:2290271
G HIP1R huntingtin interacting protein 1 related JBrowse link 12 122,834,498 122,862,961 RGD:2290271
G WDPCP WD repeat containing planar cell polarity effector JBrowse link 2 63,119,559 63,588,733 RGD:2290271
G WDR19 WD repeat domain 19 JBrowse link 4 39,182,473 39,285,810 RGD:2290271
cloaca development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHI1 Abelson helper integration site 1 JBrowse link 6 135,283,532 135,497,771 RGD:2290271
cloacal septation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 14 53,949,736 53,956,891 RGD:2290271
G TP63 tumor protein p63 JBrowse link 3 189,596,746 189,897,279 RGD:2290271
G WNT11 Wnt family member 11 JBrowse link 11 76,186,325 76,210,842 RGD:2290271
determination of digestive tract left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCDC103 coiled-coil domain containing 103 JBrowse link 17 44,899,712 44,905,390 RGD:2290271
G CCDC39 coiled-coil domain containing 39 JBrowse link 3 180,614,008 180,679,489 RGD:2290271
G CCDC40 coiled-coil domain containing 40 JBrowse link 17 80,036,632 80,100,613 RGD:2290271
G DNAAF1 dynein axonemal assembly factor 1 JBrowse link 16 84,145,266 84,178,761 RGD:2290271
G MEGF8 multiple EGF like domains 8 JBrowse link 19 42,325,635 42,378,765 RGD:2290271
G ZIC3 Zic family member 3 JBrowse link X 137,566,127 137,577,691 RGD:2290271
determination of intestine left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NPHP3 nephrocystin 3 JBrowse link 3 132,680,609 132,722,409 RGD:2290271
determination of stomach left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NPHP3 nephrocystin 3 JBrowse link 3 132,680,609 132,722,409 RGD:2290271
digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALX4 ALX homeobox 4 JBrowse link 11 44,260,440 44,310,139 RGD:2290271
G CCKBR cholecystokinin B receptor JBrowse link 11 6,259,838 6,272,127 RGD:2290271
G CCNB1 cyclin B1 JBrowse link 5 69,167,010 69,178,245 RGD:2290271
G CHD8 chromodomain helicase DNA binding protein 8 JBrowse link 14 21,385,199 21,456,123 RGD:2290271
G CLDN18 claudin 18 JBrowse link 3 137,998,816 138,033,649 RGD:2290271
G CLMP CXADR like membrane protein JBrowse link 11 123,069,872 123,195,248 RGD:2290271
G COBL cordon-bleu WH2 repeat protein JBrowse link 7 51,016,212 51,316,861 RGD:2290271
G COL3A1 collagen type III alpha 1 chain JBrowse link 2 188,974,373 189,012,746 RGD:2290271
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 JBrowse link 15 74,719,542 74,725,528 RGD:2290271
G DCHS1 dachsous cadherin-related 1 JBrowse link 11 6,621,330 6,655,809 RGD:2290271
G FAT4 FAT atypical cadherin 4 JBrowse link 4 125,314,918 125,492,932 RGD:2290271
G FGFR2 fibroblast growth factor receptor 2 JBrowse link 10 121,478,330 121,598,458 RGD:2290271
G FOXF1 forkhead box F1 JBrowse link 16 86,510,527 86,515,422 RGD:2290271
G HRH2 histamine receptor H2 JBrowse link 5 175,657,762 175,710,756 RGD:2290271
G KIT KIT proto-oncogene, receptor tyrosine kinase JBrowse link 4 54,657,928 54,740,715 RGD:2290271
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 JBrowse link 11 27,365,961 27,472,790 RGD:2290271
G MIXL1 Mix paired-like homeobox JBrowse link 1 226,223,664 226,227,060 RGD:2290271
G MYOCD myocardin JBrowse link 17 12,665,890 12,768,949 RGD:2290271
G NIPBL NIPBL cohesin loading factor JBrowse link 5 36,876,769 37,066,413 RGD:2290271
G NKX2-2 NK2 homeobox 2 JBrowse link 20 21,511,010 21,514,064 RGD:2290271
G NKX2-6 NK2 homeobox 6 JBrowse link 8 23,702,451 23,706,598 RGD:2290271
G OXTR oxytocin receptor JBrowse link 3 8,750,403 8,769,614 RGD:2290271
G PDGFC platelet derived growth factor C JBrowse link 4 156,760,454 156,971,799 RGD:2290271
G PDX1 pancreatic and duodenal homeobox 1 JBrowse link 13 27,919,982 27,926,313 RGD:2290271
G PKD1 polycystin 1, transient receptor potential channel interacting JBrowse link 16 2,088,708 2,135,898 RGD:2290271
G RB1 RB transcriptional corepressor 1 JBrowse link 13 48,303,751 48,481,890 RGD:2290271
G SLC4A2 solute carrier family 4 member 2 JBrowse link 7 151,058,200 151,076,527 RGD:2290271
G TGFB1 transforming growth factor beta 1 JBrowse link 19 41,330,323 41,353,922 RGD:2290271
G TGFB3 transforming growth factor beta 3 JBrowse link 14 75,958,061 75,983,011 RGD:2290271
G TGFBR2 transforming growth factor beta receptor 2 JBrowse link 3 30,606,472 30,694,142 RGD:2290271
digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGR2 anterior gradient 2, protein disulphide isomerase family member JBrowse link 7 16,791,811 16,804,999 RGD:2290271
G BBS7 Bardet-Biedl syndrome 7 JBrowse link 4 121,824,329 121,870,497 RGD:2290271
G BCL2 BCL2 apoptosis regulator JBrowse link 18 63,123,346 63,320,280 RGD:2290271
G EGFR epidermal growth factor receptor JBrowse link 7 55,019,017 55,211,628 RGD:2290271
G EPHB3 EPH receptor B3 JBrowse link 3 184,561,785 184,582,408 RGD:2290271
G GLI1 GLI family zinc finger 1 JBrowse link 12 57,459,785 57,472,451 RGD:2290271
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 61,695,513 61,748,259 RGD:2290271
G NODAL nodal growth differentiation factor JBrowse link 10 70,431,936 70,447,948 RGD:2290271
G PERCC1 proline and glutamate rich with coiled coil 1 JBrowse link 16 1,431,078 1,434,441 RGD:2290271
G SFRP1 secreted frizzled related protein 1 JBrowse link 8 41,261,962 41,309,473 RGD:2290271
G SFRP2 secreted frizzled related protein 2 JBrowse link 4 153,780,591 153,789,083 RGD:2290271
G SOX10 SRY-box transcription factor 10 JBrowse link 22 37,972,312 37,984,555 RGD:2290271
G STRA6 signaling receptor and transporter of retinol STRA6 JBrowse link 15 74,179,466 74,212,267 RGD:2290271
G VANGL2 VANGL planar cell polarity protein 2 JBrowse link 1 160,400,564 160,428,674 RGD:2290271
embryonic digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADA adenosine deaminase JBrowse link 20 44,619,519 44,651,758 RGD:2290271
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 JBrowse link 15 57,953,424 58,065,923 RGD:2290271
G CXCL8 C-X-C motif chemokine ligand 8 JBrowse link 4 73,740,569 73,743,716 RGD:2290271
G FGF9 fibroblast growth factor 9 JBrowse link 13 21,671,073 21,704,501 RGD:2290271
G FOXF2 forkhead box F2 JBrowse link 6 1,389,576 1,395,603 RGD:2290271
G GLI2 GLI family zinc finger 2 JBrowse link 2 120,735,868 120,992,653 RGD:2290271
G GLI3 GLI family zinc finger 3 JBrowse link 7 41,960,949 42,237,209 RGD:2290271
G PCSK5 proprotein convertase subtilisin/kexin type 5 JBrowse link 9 75,890,644 76,362,975 RGD:2290271
G PKDCC protein kinase domain containing, cytoplasmic JBrowse link 2 42,048,021 42,058,517 RGD:2290271
G RARB retinoic acid receptor beta JBrowse link 3 24,829,323 25,597,932 RGD:2290271
G RARRES2 retinoic acid receptor responder 2 JBrowse link 7 150,338,329 150,341,685 RGD:2290271
G SALL1 spalt like transcription factor 1 JBrowse link 16 51,135,975 51,151,270 RGD:2290271
G SCT secretin JBrowse link 11 626,095 627,692 RGD:2290271
G STRA6 signaling receptor and transporter of retinol STRA6 JBrowse link 15 74,179,466 74,212,267 RGD:2290271
G TGFB2 transforming growth factor beta 2 JBrowse link 1 218,345,284 218,444,619 RGD:2290271
G TNF tumor necrosis factor JBrowse link 6 31,575,565 31,578,336 RGD:2290271
embryonic digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FGF10 fibroblast growth factor 10 JBrowse link 5 44,300,247 44,389,706 RGD:2290271
G FGFR2 fibroblast growth factor receptor 2 JBrowse link 10 121,478,330 121,598,458 RGD:2290271
G FOXF1 forkhead box F1 JBrowse link 16 86,510,527 86,515,422 RGD:2290271
G GLI3 GLI family zinc finger 3 JBrowse link 7 41,960,949 42,237,209 RGD:2290271
G HLX H2.0 like homeobox JBrowse link 1 220,879,443 220,885,059 RGD:2290271
G HNF1B HNF1 homeobox B JBrowse link 17 37,686,431 37,745,059 RGD:2290271
G ID2 inhibitor of DNA binding 2 JBrowse link 2 8,682,056 8,684,461 RGD:2290271
G IHH Indian hedgehog signaling molecule JBrowse link 2 219,054,424 219,060,921 RGD:2290271
G NIPBL NIPBL cohesin loading factor JBrowse link 5 36,876,769 37,066,413 RGD:2290271
G OVOL2 ovo like zinc finger 2 JBrowse link 20 18,024,152 18,059,188 RGD:2290271
G PDGFRA platelet derived growth factor receptor alpha JBrowse link 4 54,229,127 54,298,247 RGD:2290271
G RBPMS2 RNA binding protein, mRNA processing factor 2 JBrowse link 15 64,739,891 64,775,589 RGD:2290271
G SHH sonic hedgehog signaling molecule JBrowse link 7 155,799,980 155,812,463 RGD:2290271
G SHOX2 short stature homeobox 2 JBrowse link 3 158,095,905 158,106,420 RGD:2290271
G SIX2 SIX homeobox 2 JBrowse link 2 45,005,182 45,009,645 RGD:2290271
G SOX11 SRY-box transcription factor 11 JBrowse link 2 5,692,384 5,701,385 RGD:2290271
G TCF21 transcription factor 21 JBrowse link 6 133,889,113 133,895,537 RGD:2290271
G TCF7 transcription factor 7 JBrowse link 5 134,114,681 134,148,229 RGD:2290271
embryonic ectodermal digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G VPS52 VPS52 subunit of GARP complex JBrowse link 6 33,250,272 33,271,965 RGD:2290271
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXF1 forkhead box F1 JBrowse link 16 86,510,527 86,515,422 RGD:2290271
embryonic foregut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACVR2B activin A receptor type 2B JBrowse link 3 38,453,890 38,493,142 RGD:2290271
G CTNNB1 catenin beta 1 JBrowse link 3 41,199,422 41,240,445 RGD:2290271
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 JBrowse link 2 120,013,032 120,179,119 RGD:2290271
G FOXF1 forkhead box F1 JBrowse link 16 86,510,527 86,515,422 RGD:2290271
G GATA4 GATA binding protein 4 JBrowse link 8 11,676,931 11,760,002 RGD:2290271
G SHH sonic hedgehog signaling molecule JBrowse link 7 155,799,980 155,812,463 RGD:2290271
G SMAD2 SMAD family member 2 JBrowse link 18 47,808,957 47,931,188 RGD:2290271
G SMAD3 SMAD family member 3 JBrowse link 15 67,065,602 67,195,195 RGD:2290271
G SOX17 SRY-box transcription factor 17 JBrowse link 8 54,457,935 54,460,892 RGD:2290271
embryonic hindgut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DACT1 dishevelled binding antagonist of beta catenin 1 JBrowse link 14 58,634,061 58,648,321 RGD:2290271
G HOXD13 homeobox D13 JBrowse link 2 176,087,487 176,095,944 RGD:2290271
G TCF7 transcription factor 7 JBrowse link 5 134,114,681 134,148,229 RGD:2290271
endodermal digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ID2 inhibitor of DNA binding 2 JBrowse link 2 8,682,056 8,684,461 RGD:2290271
G SOX17 SRY-box transcription factor 17 JBrowse link 8 54,457,935 54,460,892 RGD:2290271
enteric smooth muscle cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EDNRB endothelin receptor type B JBrowse link 13 77,895,481 77,975,527 RGD:2290271
exocrine pancreas development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELA1 chymotrypsin like elastase 1 JBrowse link 12 51,328,442 51,346,679 RGD:2290271
G IGF2 insulin like growth factor 2 JBrowse link 11 2,129,112 2,149,603 RGD:2290271
G INSR insulin receptor JBrowse link 19 7,112,257 7,294,414 RGD:2290271
G PDX1 pancreatic and duodenal homeobox 1 JBrowse link 13 27,919,982 27,926,313 RGD:2290271
G PTF1A pancreas associated transcription factor 1a JBrowse link 10 23,192,312 23,194,245 RGD:2290271
G SRP54 signal recognition particle 54 JBrowse link 14 34,982,898 35,029,567 RGD:2290271
G WLS Wnt ligand secretion mediator JBrowse link 1 68,098,459 68,233,018 RGD:2290271
G XBP1 X-box binding protein 1 JBrowse link 22 28,794,560 28,800,572 RGD:2290271
foregut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NOTCH1 notch receptor 1 JBrowse link 9 136,494,433 136,546,048 RGD:2290271
hindgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IFT172 intraflagellar transport 172 JBrowse link 2 27,444,373 27,489,819 RGD:2290271
hindgut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLI2 GLI family zinc finger 2 JBrowse link 2 120,735,868 120,992,653 RGD:2290271
G GLI3 GLI family zinc finger 3 JBrowse link 7 41,960,949 42,237,209 RGD:2290271
G SHH sonic hedgehog signaling molecule JBrowse link 7 155,799,980 155,812,463 RGD:2290271
G WNT5A Wnt family member 5A JBrowse link 3 55,465,715 55,505,261 RGD:2290271
intestinal epithelial cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 JBrowse link 7 7,182,544 7,248,616 RGD:2290271
G KLF5 Kruppel like factor 5 JBrowse link 13 73,054,976 73,077,542 RGD:2290271
G NKX3-2 NK3 homeobox 2 JBrowse link 4 13,540,830 13,544,508 RGD:2290271
G PRDM1 PR/SET domain 1 JBrowse link 6 106,046,729 106,109,938 RGD:2290271
G SPDEF SAM pointed domain containing ETS transcription factor JBrowse link 6 34,537,800 34,556,333 RGD:2290271
G TIGAR TP53 induced glycolysis regulatory phosphatase JBrowse link 12 4,321,213 4,360,028 RGD:2290271
G YIPF6 Yip1 domain family member 6 JBrowse link X 68,498,362 68,572,459 RGD:2290271
intestinal epithelial cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CBFA2T2 CBFA2/RUNX1 partner transcriptional co-repressor 2 JBrowse link 20 33,490,070 33,650,031 RGD:2290271
G CDX2 caudal type homeobox 2 JBrowse link 13 27,960,918 27,969,368 RGD:2290271
G GATA4 GATA binding protein 4 JBrowse link 8 11,676,931 11,760,002 RGD:2290271
G GATA5 GATA binding protein 5 JBrowse link 20 62,463,497 62,475,995 RGD:2290271
G GATA6 GATA binding protein 6 JBrowse link 18 22,169,589 22,202,528 RGD:2290271
G NPY neuropeptide Y JBrowse link 7 24,284,190 24,291,862 RGD:2290271
G PTK6 protein tyrosine kinase 6 JBrowse link 20 63,528,001 63,537,376 RGD:2290271
G PYY peptide YY JBrowse link 17 43,952,733 44,004,469 RGD:2290271
G SAV1 salvador family WW domain containing protein 1 JBrowse link 14 50,633,104 50,668,306 RGD:2290271
intestinal epithelial cell maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDKN1A cyclin dependent kinase inhibitor 1A JBrowse link 6 36,676,463 36,687,332 RGD:2290271
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 61,695,513 61,748,259 RGD:2290271
G HOXA5 homeobox A5 JBrowse link 7 27,141,052 27,143,681 RGD:2290271
G TYMS thymidylate synthetase JBrowse link 18 657,653 673,578 RGD:2290271
midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 JBrowse link 15 57,953,424 58,065,923 RGD:2290271
G ASS1 argininosuccinate synthase 1 JBrowse link 9 130,444,707 130,501,274 RGD:2290271
G CPS1 carbamoyl-phosphate synthase 1 JBrowse link 2 210,477,685 210,679,107 RGD:2290271
G DAB1 DAB adaptor protein 1 JBrowse link 1 56,994,778 58,250,547 RGD:2290271
G EGFR epidermal growth factor receptor JBrowse link 7 55,019,017 55,211,628 RGD:2290271
G FOXF1 forkhead box F1 JBrowse link 16 86,510,527 86,515,422 RGD:2290271
G OTC ornithine carbamoyltransferase JBrowse link X 38,352,528 38,421,446 RGD:2290271
G REG1A regenerating family member 1 alpha JBrowse link 2 79,120,488 79,123,409 RGD:2290271
G SMO smoothened, frizzled class receptor JBrowse link 7 129,188,633 129,213,548 RGD:2290271
G WNT5A Wnt family member 5A JBrowse link 3 55,465,715 55,505,261 RGD:2290271
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES1 hes family bHLH transcription factor 1 JBrowse link 3 194,136,148 194,138,732 RGD:2290271
negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SFRP5 secreted frizzled related protein 5 JBrowse link 10 97,766,751 97,771,999 RGD:2290271
pharynx development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CRKL CRK like proto-oncogene, adaptor protein JBrowse link 22 20,917,407 20,953,747 RGD:2290271
G FOXE1 forkhead box E1 JBrowse link 9 97,853,226 97,856,717 RGD:2290271
G TBX2 T-box transcription factor 2 JBrowse link 17 61,399,843 61,409,466 RGD:2290271
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NKX2-3 NK2 homeobox 3 JBrowse link 10 99,532,942 99,536,524 RGD:2290271
posterior midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EDNRB endothelin receptor type B JBrowse link 13 77,895,481 77,975,527 RGD:2290271
G RET ret proto-oncogene JBrowse link 10 43,077,027 43,130,351 RGD:2290271
stomach neuroendocrine cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ASCL1 achaete-scute family bHLH transcription factor 1 JBrowse link 12 102,957,674 102,960,513 RGD:2290271
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXL1 forkhead box L1 JBrowse link 16 86,578,549 86,583,478 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18105
    multicellular organismal process 7933
      multicellular organism development 5566
        system development 4986
          digestive system development 143
            digestive tract development + 131
            exocrine pancreas development 8
Path 2
Term Annotations click to browse term
  biological_process 18105
    developmental process 6593
      anatomical structure development 6069
        multicellular organism development 5566
          system development 4986
            digestive system development 143
              digestive tract development + 131
              exocrine pancreas development 8
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.