Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:digestive system development
go back to main search page
Accession:GO:0055123 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.


show annotations for term's descendants       view all columns           Sort by:
 
digestive system development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BARX1 BARX homeobox 1 JBrowse link 3 43,284,609 43,288,269 RGD:14298760
G HIP1R huntingtin interacting protein 1 related JBrowse link 14 29,996,388 30,024,343 RGD:14298760
G WDR19 WD repeat domain 19 JBrowse link 8 30,453,969 30,553,699 RGD:14298760
cloaca development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHI1 Abelson helper integration site 1 JBrowse link 1 28,566,279 28,760,471 RGD:14298760
cloacal septation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 1 183,415,989 183,422,888 RGD:14298760
G TP63 tumor protein p63 JBrowse link 13 127,115,990 127,347,082 RGD:14298760
G WNT11 Wnt family member 11 JBrowse link 9 10,413,182 10,435,158 RGD:14298760
determination of digestive tract left/right asymmetry term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCDC39 coiled-coil domain containing 39 JBrowse link 13 118,623,787 118,773,205 RGD:14298760
G CCDC40 coiled-coil domain containing 40 JBrowse link 12 2,341,953 2,384,066 RGD:14298760
G DNAAF1 dynein axonemal assembly factor 1 JBrowse link 6 4,457,283 4,483,641 RGD:14298760
G MEGF8 multiple EGF like domains 8 JBrowse link 6 49,572,905 49,619,120 RGD:14298760
G ZIC3 Zic family member 3 JBrowse link X 112,592,951 112,605,087 RGD:14298760
digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALX4 ALX homeobox 4 JBrowse link 2 18,070,726 18,085,685 RGD:14298760
G CHD8 chromodomain helicase DNA binding protein 8 JBrowse link 7 77,719,476 77,780,148 RGD:14298760
G CLDN18 claudin 18 JBrowse link 13 78,794,573 78,823,761 RGD:14298760
G COL3A1 collagen type III alpha 1 chain JBrowse link 15 93,556,914 93,595,678 RGD:14298760
G DCHS1 dachsous cadherin-related 1 JBrowse link 9 3,099,525 3,134,825 RGD:14298760
G HRH2 histamine receptor H2 JBrowse link 2 81,883,670 81,932,464 RGD:14298760
G KIT KIT proto-oncogene, receptor tyrosine kinase JBrowse link 8 41,402,334 41,492,306 RGD:14298760
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 JBrowse link 2 32,871,837 32,979,150 RGD:14298760
G MIXL1 Mix paired-like homeobox JBrowse link 10 14,102,273 14,105,544 RGD:14298760
G NIPBL NIPBL cohesin loading factor JBrowse link 16 22,152,455 22,364,373 RGD:14298760
G NKX2-2 NK2 homeobox 2 JBrowse link 17 29,275,656 29,279,572 RGD:14298760
G NKX2-6 NK2 homeobox 6 JBrowse link 14 7,811,200 7,815,553 RGD:14298760
G PDGFC platelet derived growth factor C JBrowse link 8 45,579,065 45,808,789 RGD:14298760
G PDX1 pancreatic and duodenal homeobox 1 JBrowse link 11 5,303,609 5,309,063 RGD:14298760
G RB1 RB transcriptional corepressor 1 JBrowse link 11 19,186,754 19,317,642 RGD:14298760
digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGR2 anterior gradient 2, protein disulphide isomerase family member JBrowse link 9 86,042,070 86,053,893 RGD:14298760
G EPHB3 EPH receptor B3 JBrowse link 13 122,467,561 122,488,296 RGD:14298760
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 1 190,625,436 190,673,926 RGD:14298760
G NODAL nodal growth differentiation factor JBrowse link 14 73,350,358 73,357,064 RGD:14298760
G SFRP1 secreted frizzled related protein 1 JBrowse link 17 10,436,414 10,489,773 RGD:14298760
G SFRP2 secreted frizzled related protein 2 JBrowse link 8 75,337,311 75,345,926 RGD:14298760
G SOX10 SRY-box transcription factor 10 JBrowse link 5 9,890,439 9,901,746 RGD:14298760
G STRA6 signaling receptor and transporter of retinol STRA6 JBrowse link 7 59,317,930 59,347,274 RGD:14298760
G VANGL2 VANGL planar cell polarity protein 2 JBrowse link 4 90,051,994 90,080,701 RGD:14298760
embryonic digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CXCL8 C-X-C motif chemokine ligand 8 JBrowse link 8 69,932,646 69,935,861 RGD:14298760
G FGF9 fibroblast growth factor 9 JBrowse link 11 1,554,648 1,581,938 RGD:14298760
G FOXF2 forkhead box F2 JBrowse link 7 715,001 719,781 RGD:14298760
G GLI2 GLI family zinc finger 2 JBrowse link 15 30,312,528 30,580,272 RGD:14298760
G PCSK5 proprotein convertase subtilisin/kexin type 5 JBrowse link 1 228,854,587 229,308,054 RGD:14298760
G PKDCC protein kinase domain containing, cytoplasmic JBrowse link 3 98,258,456 98,268,539 RGD:14298760
G RARRES2 retinoic acid receptor responder 2 JBrowse link 18 55,903,693 55,906,976 RGD:14298760
G SALL1 spalt like transcription factor 1 JBrowse link 6 33,731,666 33,748,698 RGD:14298760
G STRA6 signaling receptor and transporter of retinol STRA6 JBrowse link 7 59,317,930 59,347,274 RGD:14298760
G TGFB2 transforming growth factor beta 2 JBrowse link 10 8,306,136 8,435,307 RGD:14298760
G TNF tumor necrosis factor JBrowse link 7 23,699,635 23,702,393 RGD:14298760
embryonic digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FGF10 fibroblast growth factor 10 JBrowse link 16 28,695,465 28,779,953 RGD:14298760
G GLI3 GLI family zinc finger 3 JBrowse link 18 52,403,463 52,697,906 RGD:14298760
G HNF1B HNF1 homeobox B JBrowse link 12 39,143,119 39,201,631 RGD:14298760
G ID2 inhibitor of DNA binding 2 JBrowse link 3 127,500,759 127,503,207 RGD:14298760
G IHH Indian hedgehog signaling molecule JBrowse link 15 121,083,750 121,090,548 RGD:14298760
G NIPBL NIPBL cohesin loading factor JBrowse link 16 22,152,455 22,364,373 RGD:14298760
G PDGFRA platelet derived growth factor receptor alpha JBrowse link 8 40,966,568 41,021,440 RGD:14298760
G SHH sonic hedgehog signaling molecule JBrowse link 18 2,546,202 2,555,484 RGD:14298760
G SHOX2 short stature homeobox 2 JBrowse link 13 97,879,586 97,892,276 RGD:14298760
G SIX2 SIX homeobox 2 JBrowse link 3 95,460,046 95,463,428 RGD:14298760
G SOX11 SRY-box transcription factor 11 JBrowse link 3 129,797,438 129,800,568 RGD:14298760
G TCF21 transcription factor 21 JBrowse link 1 29,975,280 29,978,273 RGD:14298760
embryonic ectodermal digestive tract development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G VPS52 VPS52 subunit of GARP complex JBrowse link 7 29,624,224 29,639,168 RGD:14298760
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXF1 forkhead box F1 JBrowse link 6 2,579,348 2,598,122 RGD:14298760
embryonic foregut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACVR2B activin A receptor type 2B JBrowse link 13 23,237,699 23,276,086 RGD:14298760
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 JBrowse link 15 31,159,214 31,295,891 RGD:14298760
G FOXF1 forkhead box F1 JBrowse link 6 2,579,348 2,598,122 RGD:14298760
G SHH sonic hedgehog signaling molecule JBrowse link 18 2,546,202 2,555,484 RGD:14298760
G SMAD2 SMAD family member 2 JBrowse link 1 97,415,360 97,511,388 RGD:14298760
G SOX17 SRY-box transcription factor 17 JBrowse link 4 76,854,218 76,857,143 RGD:14298760
endodermal digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ID2 inhibitor of DNA binding 2 JBrowse link 3 127,500,759 127,503,207 RGD:14298760
G SOX17 SRY-box transcription factor 17 JBrowse link 4 76,854,218 76,857,143 RGD:14298760
enteric smooth muscle cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EDNRB endothelin receptor type B JBrowse link 11 50,073,300 50,102,879 RGD:14298760
exocrine pancreas development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G INSR insulin receptor JBrowse link 2 71,797,209 71,939,923 RGD:14298760
G PDX1 pancreatic and duodenal homeobox 1 JBrowse link 11 5,303,609 5,309,063 RGD:14298760
G WLS Wnt ligand secretion mediator JBrowse link 6 144,242,639 144,529,659 RGD:14298760
G XBP1 X-box binding protein 1 JBrowse link 14 46,011,239 46,016,526 RGD:14298760
foregut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NOTCH1 notch receptor 1 RGD:14298760
hindgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IFT172 intraflagellar transport 172 JBrowse link 3 111,683,674 111,718,504 RGD:14298760
hindgut morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLI2 GLI family zinc finger 2 JBrowse link 15 30,312,528 30,580,272 RGD:14298760
G GLI3 GLI family zinc finger 3 JBrowse link 18 52,403,463 52,697,906 RGD:14298760
G SHH sonic hedgehog signaling molecule JBrowse link 18 2,546,202 2,555,484 RGD:14298760
G WNT5A Wnt family member 5A JBrowse link 13 37,344,684 37,367,215 RGD:14298760
intestinal epithelial cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KLF5 Kruppel like factor 5 JBrowse link 11 45,370,009 45,386,673 RGD:14298760
G NKX3-2 NK3 homeobox 2 JBrowse link 8 9,179,061 9,183,340 RGD:14298760
G PRDM1 PR/SET domain 1 JBrowse link 1 72,309,096 72,335,474 RGD:14298760
G SPDEF SAM pointed domain containing ETS transcription factor JBrowse link 7 30,515,925 30,538,095 RGD:14298760
G TIGAR TP53 induced glycolysis regulatory phosphatase JBrowse link 5 66,044,679 66,067,571 RGD:14298760
G YIPF6 Yip1 domain family member 6 JBrowse link X 54,661,771 54,687,988 RGD:14298760
intestinal epithelial cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CBFA2T2 CBFA2/RUNX1 partner transcriptional co-repressor 2 JBrowse link 17 36,990,075 37,150,390 RGD:14298760
G CDX2 caudal type homeobox 2 JBrowse link 11 5,339,727 5,346,081 RGD:14298760
G GATA4 GATA binding protein 4 JBrowse link 14 14,858,470 14,938,156 RGD:14298760
G GATA5 GATA binding protein 5 JBrowse link 17 61,824,891 61,834,742 RGD:14298760
G GATA6 GATA binding protein 6 JBrowse link 6 107,282,709 107,314,725 RGD:14298760
G PTK6 protein tyrosine kinase 6 JBrowse link 17 62,538,853 62,547,866 RGD:14298760
G SAV1 salvador family WW domain containing protein 1 JBrowse link 1 180,404,871 180,434,458 RGD:14298760
intestinal epithelial cell maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 1 190,625,436 190,673,926 RGD:14298760
midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXF1 forkhead box F1 JBrowse link 6 2,579,348 2,598,122 RGD:14298760
G SMO smoothened, frizzled class receptor JBrowse link 18 19,450,730 19,478,796 RGD:14298760
G WNT5A Wnt family member 5A JBrowse link 13 37,344,684 37,367,215 RGD:14298760
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES1 hes family bHLH transcription factor 1 JBrowse link 13 131,135,970 131,137,865 RGD:14298760
negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SFRP5 secreted frizzled related protein 5 JBrowse link 14 109,120,382 109,125,655 RGD:14298760
pharynx development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CRKL CRK like proto-oncogene, adaptor protein JBrowse link 14 50,528,950 50,558,664 RGD:14298760
G FOXE1 forkhead box E1 JBrowse link 1 239,727,769 239,732,461 RGD:14298760
G TBX2 T-box transcription factor 2 JBrowse link 12 36,878,662 36,887,513 RGD:14298760
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NKX2-3 NK2 homeobox 3 JBrowse link 14 110,720,384 110,724,002 RGD:14298760
posterior midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EDNRB endothelin receptor type B JBrowse link 11 50,073,300 50,102,879 RGD:14298760
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXL1 forkhead box L1 JBrowse link 6 2,540,748 2,544,978 RGD:14298760

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15166
    multicellular organismal process 5841
      multicellular organism development 3485
        system development 3187
          digestive system development 91
            digestive tract development + 85
            exocrine pancreas development 4
Path 2
Term Annotations click to browse term
  biological_process 15166
    developmental process 4237
      anatomical structure development 3929
        multicellular organism development 3485
          system development 3187
            digestive system development 91
              digestive tract development + 85
              exocrine pancreas development 4
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.