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ONTOLOGY REPORT - ANNOTATIONS


Term:convergent extension
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Accession:GO:0060026 term browser browse the term
Definition:The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis.
Synonyms:xref: Wikipedia:Convergent_extension


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convergent extension term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:98958 (MGI:MGI:4413372|PMID:19795512)
PMID:21873635
RGD PMID:19795512, PMID:21873635 MGI:MGI:4413372, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Ptk7 protein tyrosine kinase 7 ISO MGI:MGI:3640803 (MGI:MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:MGI:4830023 NCBI chr 9:16,662,588...16,729,888
Ensembl chr 9:16,702,460...16,729,030
JBrowse link
G Wnt5a Wnt family member 5A ISO MGI:MGI:1857617 (MGI:MGI:3714704|PMID:17433286) RGD PMID:17433286 MGI:MGI:3714704 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
cardioblast migration to the midline involved in heart field formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (MGI:MGI:1339460|PMID:10393122) RGD PMID:10393122 MGI:MGI:1339460 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
convergent extension involved in axis elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:MGI:108078|MGI:MGI:1860298 (MGI:MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:MGI:3793375 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Sfrp5 secreted frizzled-related protein 5 ISO MGI:MGI:108078|MGI:MGI:892014 (MGI:MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:MGI:3793375 NCBI chr 1:261,442,108...261,446,570
Ensembl chr 1:261,442,108...261,446,570
JBrowse link
G Trim28 tripartite motif-containing 28 ISO MGI:MGI:1928907 (MGI:MGI:5300649|PMID:22110054) RGD PMID:22110054 MGI:MGI:5300649 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:MGI:1857642 (MGI:MGI:3703464|PMID:17229766) RGD PMID:17229766 MGI:MGI:3703464 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
G Wnt11 Wnt family member 11 ISO MGI:MGI:98958 (MGI:MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:MGI:5634837 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:101948|MGI:MGI:1857617 (MGI:MGI:5634837|PMID:25813538)
GO_REF:0000107
RGD
Ensembl
PMID:25813538 GO_REF:0000107, MGI:MGI:5634837 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 ISO UniProtKB:Q6AZT7 (PMID:18371931) RGD PMID:18371931 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 ISO MGI:MGI:106613 (MGI:MGI:3624185|PMID:16571627) RGD PMID:16571627 MGI:MGI:3624185 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO MGI:MGI:2135272|MGI:MGI:2429760|MGI:MGI:94941 (MGI:MGI:3624185|PMID:16571627) RGD PMID:16571627 MGI:MGI:3624185 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:MGI:106613|MGI:MGI:1857642 (MGI:MGI:3624185|PMID:16571627), (MGI:MGI:3703464|PMID:17229766) RGD PMID:16571627, PMID:17229766 MGI:MGI:3624185, MGI:MGI:3703464 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
convergent extension involved in organogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 ISO MGI:MGI:106613|MGI:MGI:2137230 (MGI:MGI:3589836|PMID:16116426) RGD PMID:16116426 MGI:MGI:3589836 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO MGI:MGI:94941 (MGI:MGI:3589836|PMID:16116426) RGD PMID:16116426 MGI:MGI:3589836 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Frzb frizzled-related protein ISO MGI:MGI:98958 (MGI:MGI:3714704|PMID:17433286) RGD PMID:17433286 MGI:MGI:3714704 NCBI chr 3:67,635,604...67,668,772
Ensembl chr 3:67,635,607...67,668,772
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:MGI:98958 (MGI:MGI:3714704|PMID:17433286) RGD PMID:17433286 MGI:MGI:3714704 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO
GO_REF:0000107
MGI:MGI:1298218|MGI:MGI:2135272 (MGI:MGI:3714704|PMID:17433286), (MGI:MGI:4413372|PMID:19795512)
Ensembl
RGD
PMID:17433286, PMID:19795512 GO_REF:0000107, MGI:MGI:3714704, MGI:MGI:4413372 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 ISO
IEA
MGI:MGI:108078|MGI:MGI:1860298 (MGI:MGI:3793375|PMID:18257070)
GO_REF:0000107
RGD
Ensembl
PMID:18257070 GO_REF:0000107, MGI:MGI:3793375 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
negative regulation of convergent extension involved in axis elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkd1 NKD inhibitor of WNT signaling pathway 1 ISO (MGI:MGI:5437442|PMID:11274398) RGD PMID:11274398 MGI:MGI:5437442 NCBI chr19:19,434,720...19,509,087
Ensembl chr19:19,436,333...19,509,087
JBrowse link
planar cell polarity pathway involved in gastrula mediolateral intercalation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt11 Wnt family member 11 ISO MGI:MGI:98958 (MGI:MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:MGI:5634837 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:101948 (MGI:MGI:5634837|PMID:25813538)
GO_REF:0000107
RGD
Ensembl
PMID:25813538 GO_REF:0000107, MGI:MGI:5634837 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      anatomical structure morphogenesis 2877
        tissue morphogenesis 698
          morphogenesis of an epithelium 586
            convergent extension 15
              convergent extension involved in axis elongation + 8
              convergent extension involved in gastrulation + 7
              convergent extension involved in organogenesis + 6
Path 2
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      anatomical structure development 6269
        anatomical structure morphogenesis 2877
          tissue morphogenesis 698
            morphogenesis of an epithelium 586
              convergent extension 15
                convergent extension involved in axis elongation + 8
                convergent extension involved in gastrulation + 7
                convergent extension involved in organogenesis + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.