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ONTOLOGY REPORT - ANNOTATIONS


Term:convergent extension involved in gastrulation
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Accession:GO:0060027 term browser browse the term
Definition:The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis usually resulting in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm.


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convergent extension involved in gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 ISO UniProtKB:Q6AZT7 (PMID:18371931) RGD PMID:18371931 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 ISO MGI:MGI:106613 (MGI:MGI:3624185|PMID:16571627) RGD PMID:16571627 MGI:MGI:3624185 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO MGI:MGI:2135272|MGI:MGI:2429760|MGI:MGI:94941 (MGI:MGI:3624185|PMID:16571627) RGD PMID:16571627 MGI:MGI:3624185 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:MGI:106613|MGI:MGI:1857642 (MGI:MGI:3624185|PMID:16571627), (MGI:MGI:3703464|PMID:17229766) RGD PMID:16571627, PMID:17229766 MGI:MGI:3624185, MGI:MGI:3703464 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 ISO
IEA
MGI:MGI:108078|MGI:MGI:1860298 (MGI:MGI:3793375|PMID:18257070)
GO_REF:0000107
RGD
Ensembl
PMID:18257070 GO_REF:0000107, MGI:MGI:3793375 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
planar cell polarity pathway involved in gastrula mediolateral intercalation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt11 Wnt family member 11 ISO MGI:MGI:98958 (MGI:MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:MGI:5634837 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:101948 (MGI:MGI:5634837|PMID:25813538)
GO_REF:0000107
RGD
Ensembl
PMID:25813538 GO_REF:0000107, MGI:MGI:5634837 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      anatomical structure morphogenesis 2877
        embryonic morphogenesis 690
          convergent extension involved in gastrulation 7
            convergent extension involved in neural plate elongation + 3
            convergent extension involved in notochord morphogenesis + 0
            convergent extension involved in rhombomere morphogenesis + 0
            convergent extension involved in somitogenesis + 1
            dorsal convergence 0
            mediolateral intercalation + 2
            negative regulation of convergent extension involved in gastrulation + 0
            positive regulation of convergent extension involved in gastrulation + 0
            regulation of convergent extension involved in gastrulation + 0
Path 2
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      anatomical structure development 6269
        anatomical structure morphogenesis 2877
          tissue morphogenesis 698
            morphogenesis of an epithelium 586
              convergent extension 15
                convergent extension involved in gastrulation 7
                  convergent extension involved in neural plate elongation + 3
                  convergent extension involved in notochord morphogenesis + 0
                  convergent extension involved in rhombomere morphogenesis + 0
                  convergent extension involved in somitogenesis + 1
                  dorsal convergence 0
                  mediolateral intercalation + 2
                  negative regulation of convergent extension involved in gastrulation + 0
                  positive regulation of convergent extension involved in gastrulation + 0
                  regulation of convergent extension involved in gastrulation + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.