ONTOLOGY REPORT - ANNOTATIONS


Term:retina development in camera-type eye
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Accession:GO:0060041 term browser browse the term
Definition:The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
Synonyms:exact_synonym: retina development in camera-style eye
 related_synonym: retinal development
 alt_id: GO:0002073


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retina development in camera-type eye term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ache acetylcholinesterase JBrowse link 12 22,472,358 22,477,052 RGD:1624291
RGD:1600115
G Actb actin, beta JBrowse link 12 13,715,843 13,718,813 RGD:9587758
G Agtpbp1 ATP/GTP binding protein 1 JBrowse link 17 5,510,009 5,614,416 RGD:1600115
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1624291
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:1624291
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:1624291
RGD:1600115
G Bmp4 bone morphogenetic protein 4 JBrowse link 15 20,776,060 20,791,013 RGD:2289001
G Bmpr1b bone morphogenetic protein receptor type 1B JBrowse link 2 247,392,195 247,662,026 RGD:1624291
RGD:1600115
G Bmpr2 bone morphogenetic protein receptor type 2 JBrowse link 9 66,568,074 66,683,019 RGD:5129487
G Cacna1f calcium voltage-gated channel subunit alpha1 F JBrowse link X 15,712,709 15,741,135 RGD:1624291
G Calb1 calbindin 1 JBrowse link 5 29,538,380 29,562,774 RGD:1624291
G Cep290 centrosomal protein 290 JBrowse link 7 40,217,269 40,306,327 RGD:1624291
G Chd7 chromodomain helicase DNA binding protein 7 JBrowse link 5 21,769,087 21,952,036 RGD:1624291
RGD:1600115
G Clcn2 chloride voltage-gated channel 2 JBrowse link 11 82,862,664 82,876,165 RGD:1624291
G Cln8 CLN8, transmembrane ER and ERGIC protein JBrowse link 16 79,828,321 79,838,212 RGD:1624291
RGD:1600115
G Crx cone-rod homeobox JBrowse link 1 77,744,593 77,758,913 RGD:1624291
G Dcx doublecortin JBrowse link X 115,098,675 115,175,515 RGD:13792537
G Dll1 delta like canonical Notch ligand 1 JBrowse link 1 57,318,621 57,326,732 RGD:1624291
RGD:1600115
G Drd4 dopamine receptor D4 JBrowse link 1 214,278,296 214,282,818 RGD:7175073
G Dtnbp1 dystrobrevin binding protein 1 JBrowse link 17 20,090,136 20,182,332 RGD:11251759
G Gdnf glial cell derived neurotrophic factor JBrowse link 2 56,884,181 56,912,964 RGD:2324945
G Gnat1 G protein subunit alpha transducin 1 JBrowse link 8 116,433,302 116,438,038 RGD:1624291
RGD:1600115
G Gnb1 G protein subunit beta 1 JBrowse link 5 172,914,025 172,981,403 RGD:1624291
RGD:1600115
G Grm6 glutamate metabotropic receptor 6 JBrowse link 10 36,345,503 36,363,416 RGD:1624291
RGD:1600115
G Hpca hippocalcin JBrowse link 5 147,295,124 147,305,757 RGD:9686441
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 JBrowse link 1 261,989,178 262,015,282 RGD:1624291
G Ift140 intraflagellar transport 140 JBrowse link 10 14,373,668 14,461,509 RGD:1624291
RGD:1600115
G Ikzf1 IKAROS family zinc finger 1 JBrowse link 14 91,782,281 91,867,828 RGD:1624291
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:7829830
G Impdh1 inosine monophosphate dehydrogenase 1 JBrowse link 4 56,478,383 56,493,987 RGD:5144133
G Impdh2 inosine monophosphate dehydrogenase 2 JBrowse link 8 117,346,983 117,351,619 RGD:5144133
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 10 105,781,752 105,787,803 RGD:1624291
RGD:1600115
G Lama1 laminin subunit alpha 1 JBrowse link 9 115,916,907 116,042,123 RGD:1624291
G Lamb2 laminin subunit beta 2 JBrowse link 8 117,268,335 117,280,517 RGD:1624291
RGD:1600115
G Lamc3 laminin subunit gamma 3 JBrowse link 3 9,265,407 9,327,107 RGD:1624291
RGD:1600115
G Lhx1 LIM homeobox 1 JBrowse link 10 71,843,991 71,849,293 RGD:1624291
G Lhx2 LIM homeobox 2 JBrowse link 3 22,628,674 22,658,447 RGD:1624291
RGD:1600115
G Lif LIF, interleukin 6 family cytokine JBrowse link 14 84,482,652 84,500,574 RGD:2326157
G Lpcat1 lysophosphatidylcholine acyltransferase 1 JBrowse link 1 32,379,431 32,429,917 RGD:1624291
RGD:1600115
G Max MYC associated factor X JBrowse link 6 99,984,260 100,011,460 RGD:2316820
G Mdm1 Mdm1 nuclear protein JBrowse link 7 61,165,652 61,200,865 RGD:1624291
RGD:13792537
G Mertk MER proto-oncogene, tyrosine kinase JBrowse link 3 121,235,230 121,340,932 RGD:1624291
RGD:1600115
G Mfrp membrane frizzled-related protein JBrowse link 8 48,437,720 48,443,421 RGD:1624291
RGD:1600115
G Mir183 microRNA 183 JBrowse link 4 57,463,569 57,463,678 RGD:1624291
G Mir96 microRNA 96 JBrowse link 4 57,463,366 57,463,471 RGD:1624291
G Musk muscle associated receptor tyrosine kinase JBrowse link 5 75,392,790 75,498,694 RGD:2317091
G Myh10 myosin heavy chain 10 JBrowse link 10 55,274,910 55,406,738 RGD:1600115
RGD:1624291
G Nectin1 nectin cell adhesion molecule 1 JBrowse link 8 48,094,233 48,198,499 RGD:1624291
RGD:1600115
G Neurod4 neuronal differentiation 4 JBrowse link 7 9,699,964 9,712,067 RGD:2311603
G Nos3 nitric oxide synthase 3 JBrowse link 4 7,321,908 7,342,404 RGD:7771562
G Nphp1 nephrocystin 1 JBrowse link 3 120,316,048 120,370,089 RGD:1624291
G Nphp4 nephrocystin 4 JBrowse link 5 169,647,581 169,744,662 RGD:1624291
RGD:1600115
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 JBrowse link 20 47,286,843 47,306,318 RGD:1624291
RGD:1600115
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 JBrowse link 8 64,797,518 64,801,587 RGD:1624291
RGD:1600115
G Ntrk2 neurotrophic receptor tyrosine kinase 2 JBrowse link 17 5,934,651 6,245,778 RGD:1624291
RGD:1600115
G Opa1 OPA1, mitochondrial dynamin like GTPase JBrowse link 11 74,717,600 74,793,902 RGD:1547836
G Pax4 paired box 4 JBrowse link 4 55,735,640 55,753,461 RGD:2311636
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:2311636
RGD:1600115
RGD:1624291
G Pde6a phosphodiesterase 6A JBrowse link 18 56,544,652 56,617,480 RGD:1624291
RGD:13792537
G Pde6b phosphodiesterase 6B JBrowse link 14 2,328,690 2,371,913 RGD:1624291
RGD:13792537
G Pdgfb platelet derived growth factor subunit B JBrowse link 7 121,215,458 121,233,092 RGD:1624291
G Pfdn5 prefoldin subunit 5 JBrowse link 7 143,924,662 143,929,400 RGD:1624291
RGD:1600115
G Pou4f2 POU class 4 homeobox 2 JBrowse link 19 33,160,180 33,163,821 RGD:1624291
RGD:1600115
G Prph2 peripherin 2 JBrowse link 9 16,085,933 16,386,176 RGD:1624291
G Ptn pleiotrophin JBrowse link 4 64,239,156 64,330,996 RGD:9831439
RGD:9831456
G Rarb retinoic acid receptor, beta JBrowse link 15 9,915,223 10,262,599 RGD:1624291
G Rarg retinoic acid receptor, gamma JBrowse link 7 143,840,739 143,863,206 RGD:1624291
G Rbp4 retinol binding protein 4 JBrowse link 1 256,806,476 256,813,678 RGD:1624291
G Rd3 retinal degeneration 3, GUCY2D regulator JBrowse link 13 110,739,645 110,749,167 RGD:1624291
RGD:13792537
G Ret ret proto-oncogene JBrowse link 4 150,202,170 150,249,196 RGD:2324945
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:1624291
RGD:1600115
G Rnpep arginyl aminopeptidase JBrowse link 13 52,092,863 52,124,006 RGD:2325937
G Rorb RAR-related orphan receptor B JBrowse link 1 234,252,757 234,442,597 RGD:1624291
RGD:1600115
G Rp1 RP1, axonemal microtubule associated JBrowse link 5 15,005,028 15,060,508 RGD:1624291
RGD:13792537
G Rp1l1 RP1 like 1 JBrowse link 15 47,344,380 47,384,461 RGD:13792537
G Rpe65 retinoid isomerohydrolase RPE65 JBrowse link 2 266,141,581 266,169,197 RGD:1624291
G Rpgrip1 RPGR interacting protein 1 JBrowse link 15 28,521,287 28,575,046 RGD:1624291
G Rpl24 ribosomal protein L24 JBrowse link 11 47,116,885 47,122,093 RGD:1624291
G Rrm1 ribonucleotide reductase catalytic subunit M1 JBrowse link 1 167,538,387 167,562,688 RGD:5133699
G Serpinf1 serpin family F member 1 JBrowse link 10 62,241,750 62,254,145 RGD:8655555
G Ski SKI proto-oncogene JBrowse link 5 172,556,196 172,623,878 RGD:1624291
G Slc4a5 solute carrier family 4 member 5 JBrowse link 4 114,918,488 115,002,290 RGD:1624291
RGD:1600115
G Sox8 SRY box 8 JBrowse link 10 14,932,348 14,937,336 RGD:1624291
RGD:1600115
G Sox9 SRY box 9 JBrowse link 10 101,288,528 101,294,030 RGD:1624291
RGD:1600115
G Tbc1d32 TBC1 domain family, member 32 JBrowse link 20 37,463,879 37,701,268 RGD:1624291
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 JBrowse link 1 219,126,687 219,139,466 RGD:1624291
RGD:1600115
G Tent2 terminal nucleotidyltransferase 2 JBrowse link 2 22,746,290 22,798,252 RGD:11041783
G Tgif1 TGFB-induced factor homeobox 1 JBrowse link 9 119,181,079 119,190,698 RGD:1624291
G Tgif2 TGFB-induced factor homeobox 2 JBrowse link 3 152,906,961 152,924,380 RGD:1624291
G Ttll5 tubulin tyrosine ligase like 5 JBrowse link 6 109,693,915 109,910,479 RGD:1624291
RGD:1600115
G Tub tubby bipartite transcription factor JBrowse link 1 173,550,929 173,629,550 RGD:1624291
RGD:1600115
G Tulp1 tubby like protein 1 JBrowse link 20 7,931,673 7,943,601 RGD:1624291
G Uchl3 ubiquitin C-terminal hydrolase L3 JBrowse link 15 86,153,624 86,198,127 RGD:1624291
G Ush2a usherin JBrowse link 13 106,750,738 107,434,195 RGD:634438
G Vax2 ventral anterior homeobox 2 JBrowse link 4 115,388,839 115,412,515 RGD:1624291
RGD:1600115
G Xrn2 5'-3' exoribonuclease 2 JBrowse link 3 141,224,858 141,298,272 RGD:11041783
G Zfp513 zinc finger protein 513 JBrowse link 6 26,537,707 26,541,051 RGD:1624291
RGD:1600115
amacrine cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxn4 forkhead box N4 JBrowse link 12 48,101,012 48,121,281 RGD:1624291
RGD:1600115
G Ikzf1 IKAROS family zinc finger 1 JBrowse link 14 91,782,281 91,867,828 RGD:1624291
G Miat myocardial infarction associated transcript JBrowse link 12 50,447,251 50,461,859 RGD:1624291
G Neurod1 neuronal differentiation 1 JBrowse link 3 66,414,314 66,417,617 RGD:1624291
RGD:1600115
G Neurod4 neuronal differentiation 4 JBrowse link 7 9,699,964 9,712,067 RGD:1624291
RGD:1600115
G Ptf1a pancreas associated transcription factor 1a JBrowse link 17 86,199,623 86,201,477 RGD:1624291
RGD:1600115
G Rorb RAR-related orphan receptor B JBrowse link 1 234,252,757 234,442,597 RGD:1624291
RGD:1600115
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dscam DS cell adhesion molecule JBrowse link 11 37,004,776 37,599,866 RGD:1600115
G Prom1 prominin 1 JBrowse link 14 71,532,321 71,637,400 RGD:1624291
RGD:13792537
G Rom1 retinal outer segment membrane protein 1 JBrowse link 1 225,126,732 225,128,740 RGD:1624291
RGD:1600115
G Sdk2 sidekick cell adhesion molecule 2 JBrowse link 10 102,299,593 102,576,554 RGD:1624291
RGD:1600115
G Slc4a7 solute carrier family 4 member 7 JBrowse link 15 11,832,611 11,912,923 RGD:1624291
G Ttc8 tetratricopeptide repeat domain 8 JBrowse link 6 122,920,308 122,974,525 RGD:1624291
RGD:1600115
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ihh Indian hedgehog signaling molecule JBrowse link 9 82,208,223 82,214,440 RGD:1624291
RGD:1600115
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdon cell adhesion associated, oncogene regulated JBrowse link 8 36,625,757 36,712,091 RGD:1624291
RGD:1600115
G Hipk1 homeodomain interacting protein kinase 1 JBrowse link 2 206,224,015 206,274,910 RGD:1624291
RGD:1600115
G Hipk2 homeodomain interacting protein kinase 2 JBrowse link 4 66,438,390 66,625,183 RGD:1624291
RGD:1600115
G Lhx1 LIM homeobox 1 JBrowse link 10 71,843,991 71,849,293 RGD:1624291
RGD:1600115
G Lrp6 LDL receptor related protein 6 JBrowse link 4 168,194,054 168,323,962 RGD:1624291
RGD:13792537
G Prox1 prospero homeobox 1 JBrowse link 13 108,382,536 108,444,107 RGD:1624291
RGD:1600115
G Rbp4 retinol binding protein 4 JBrowse link 1 256,806,476 256,813,678 RGD:1624291
horizontal cell localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lhx1 LIM homeobox 1 JBrowse link 10 71,843,991 71,849,293 RGD:1624291
RGD:1600115
negative regulation of amacrine cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casz1 castor zinc finger 1 JBrowse link 5 165,625,119 165,777,053 RGD:1624291
G Pou4f2 POU class 4 homeobox 2 JBrowse link 19 33,160,180 33,163,821 RGD:1624291
RGD:1600115
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casz1 castor zinc finger 1 JBrowse link 5 165,625,119 165,777,053 RGD:1624291
neural retina development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actl6a actin-like 6A JBrowse link 2 119,112,776 119,128,870 RGD:1624291
RGD:1600115
G Atoh7 atonal bHLH transcription factor 7 JBrowse link 20 27,082,961 27,083,410 RGD:1624291
RGD:1600115
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 JBrowse link 7 41,114,606 41,223,138 RGD:2317729
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 JBrowse link 4 145,704,779 145,948,997 RGD:2317729
G Atp2b3 ATPase plasma membrane Ca2+ transporting 3 JBrowse link X 157,236,400 157,312,028 RGD:2317729
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 JBrowse link 13 50,091,644 50,153,808 RGD:2317729
G Casp2 caspase 2 JBrowse link 4 71,652,358 71,670,228 RGD:4107085
G Gpm6a glycoprotein m6a JBrowse link 16 39,367,697 39,719,292 RGD:1624291
RGD:1600115
G Optn optineurin JBrowse link 17 77,167,700 77,218,374 RGD:7800681
G Psen1 presenilin 1 JBrowse link 6 107,169,514 107,221,000 RGD:729595
G Rab11fip4 RAB11 family interacting protein 4 JBrowse link 10 66,942,363 67,051,672 RGD:1624291
RGD:1600115
G Rpe65 retinoid isomerohydrolase RPE65 JBrowse link 2 266,141,581 266,169,197 RGD:9585660
G Sdhaf4 succinate dehydrogenase complex assembly factor 4 JBrowse link 9 30,243,261 30,251,478 RGD:1624291
RGD:1600115
G Slc17a6 solute carrier family 17 member 6 JBrowse link 1 106,980,463 107,038,717 RGD:9999162
G Slc17a7 solute carrier family 17 member 7 JBrowse link 1 101,161,265 101,172,292 RGD:9999162
G Slc17a8 solute carrier family 17 member 8 JBrowse link 7 30,215,231 30,274,993 RGD:9999162
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:1624291
RGD:1600115
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 JBrowse link 4 7,076,710 7,108,334 RGD:1624291
RGD:1600115
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:1624291
positive regulation of amacrine cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dlx1 distal-less homeobox 1 JBrowse link 3 58,164,931 58,169,521 RGD:1600115
RGD:1624291
G Dlx2 distal-less homeobox 2 JBrowse link 3 58,180,088 58,181,971 RGD:1600115
RGD:1624291
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccdc66 coiled-coil domain containing 66 JBrowse link 16 3,107,119 3,139,188 RGD:1624291
G Dscam DS cell adhesion molecule JBrowse link 11 37,004,776 37,599,866 RGD:1624291
RGD:1600115
G Grk1 G protein-coupled receptor kinase 1 JBrowse link 16 81,153,489 81,165,442 RGD:1624291
regulation of neural retina development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dll4 delta like canonical Notch ligand 4 JBrowse link 3 111,135,011 111,146,746 RGD:1624291
RGD:1600115
G Ptf1a pancreas associated transcription factor 1a JBrowse link 17 86,199,623 86,201,477 RGD:1624291
RGD:1600115
G Six3 SIX homeobox 3 JBrowse link 6 8,886,730 8,891,094 RGD:1624291
regulation of retina development in camera-type eye term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Celf4 CUGBP, Elav-like family member 4 JBrowse link 18 17,689,090 18,079,835 RGD:1624291
retina layer formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1624291
RGD:1600115
G Arl6 ADP-ribosylation factor like GTPase 6 JBrowse link 11 42,858,476 42,884,324 RGD:1624291
RGD:1600115
G Atp8a2 ATPase phospholipid transporting 8A2 JBrowse link 15 39,955,689 40,488,737 RGD:1624291
RGD:1600115
G Calb1 calbindin 1 JBrowse link 5 29,538,380 29,562,774 RGD:1624291
RGD:1600115
G Dscam DS cell adhesion molecule JBrowse link 11 37,004,776 37,599,866 RGD:1600115
G Fat3 FAT atypical cadherin 3 JBrowse link 8 14,417,039 15,011,596 RGD:1624291
G Fjx1 four-jointed box kinase 1 JBrowse link 3 92,288,818 92,290,919 RGD:1624291
RGD:1600115
G Foxn4 forkhead box N4 JBrowse link 12 48,101,012 48,121,281 RGD:1624291
RGD:1600115
G Hipk1 homeodomain interacting protein kinase 1 JBrowse link 2 206,224,015 206,274,910 RGD:1624291
RGD:1600115
G Hipk2 homeodomain interacting protein kinase 2 JBrowse link 4 66,438,390 66,625,183 RGD:1624291
RGD:1600115
G Irx6 iroquois homeobox 6 JBrowse link 19 15,726,633 15,733,442 RGD:1624291
G Lhx1 LIM homeobox 1 JBrowse link 10 71,843,991 71,849,293 RGD:1600115
RGD:1624291
G Megf11 multiple EGF-like-domains 11 JBrowse link 8 69,859,256 70,191,070 RGD:1624291
G Prom1 prominin 1 JBrowse link 14 71,532,321 71,637,400 RGD:1624291
G Ptf1a pancreas associated transcription factor 1a JBrowse link 17 86,199,623 86,201,477 RGD:1624291
RGD:1600115
G Ptprm protein tyrosine phosphatase, receptor type, M JBrowse link 9 114,846,095 115,555,261 RGD:1624291
RGD:1600115
G Rdh13 retinol dehydrogenase 13 JBrowse link 1 72,956,017 72,983,811 RGD:1624291
RGD:1600115
G Rs1 retinoschisin 1 JBrowse link X 35,749,957 35,777,243 RGD:1624291
RGD:1600115
G Sdk2 sidekick cell adhesion molecule 2 JBrowse link 10 102,299,593 102,576,554 RGD:1624291
RGD:13792537
G Tfap2a transcription factor AP-2 alpha JBrowse link 17 24,653,342 24,670,457 RGD:1624291
G Tfap2b transcription factor AP-2 beta JBrowse link 9 25,410,669 25,440,568 RGD:1624291
RGD:1600115
G Tspan12 tetraspanin 12 JBrowse link 4 48,852,823 48,953,240 RGD:1624291
RGD:1600115
retina morphogenesis in camera-type eye term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bhlhe22 basic helix-loop-helix family, member e22 JBrowse link 2 102,685,513 102,688,624 RGD:1624291
G Dll1 delta like canonical Notch ligand 1 JBrowse link 1 57,318,621 57,326,732 RGD:1600115
RGD:1624291
G Lrp5 LDL receptor related protein 5 JBrowse link 1 218,816,833 218,920,147 RGD:1624291
G Lrp6 LDL receptor related protein 6 JBrowse link 4 168,194,054 168,323,962 RGD:1624291
G Man2a1 mannosidase, alpha, class 2A, member 1 JBrowse link 9 112,293,388 112,451,677 RGD:1624291
RGD:1600115
G Nectin3 nectin cell adhesion molecule 3 JBrowse link 11 57,897,879 57,995,193 RGD:1624291
G Prom1 prominin 1 JBrowse link 14 71,532,321 71,637,400 RGD:1624291
G Ptf1a pancreas associated transcription factor 1a JBrowse link 17 86,199,623 86,201,477 RGD:1624291
G Rom1 retinal outer segment membrane protein 1 JBrowse link 1 225,126,732 225,128,740 RGD:1624291
G Rp1 RP1, axonemal microtubule associated JBrowse link 5 15,005,028 15,060,508 RGD:1624291
G Rpe65 retinoid isomerohydrolase RPE65 JBrowse link 2 266,141,581 266,169,197 RGD:1624291
RGD:1600115
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link X 14,271,012 14,331,745 RGD:1624291
G Sox2 SRY box 2 JBrowse link 2 121,165,137 121,167,545 RGD:1624291
G Vsx2 visual system homeobox 2 JBrowse link 6 108,285,031 108,308,588 RGD:1624291
retina vasculature development in camera-type eye term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acvr2b activin A receptor type 2B JBrowse link 8 128,087,308 128,126,776 RGD:1624291
RGD:1600115
G Acvrl1 activin A receptor like type 1 JBrowse link 7 142,769,942 142,787,336 RGD:1624291
RGD:1600115
G Bmpr2 bone morphogenetic protein receptor type 2 JBrowse link 9 66,568,074 66,683,019 RGD:1624291
RGD:1600115
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 JBrowse link 6 2,308,179 2,316,739 RGD:1624291
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:1624291
RGD:1600115
G Mir218-2 microRNA 218-2 JBrowse link 10 20,428,661 20,428,770 RGD:1624291
G Mir23a microRNA 23a JBrowse link 19 25,318,582 25,318,656 RGD:1624291
G Mir23b microRNA 23b JBrowse link 17 823,222 823,318 RGD:1624291
G Mir24-2 microRNA 24-2 JBrowse link 19 25,318,863 25,318,970 RGD:1624291
G Mir27a microRNA 27a JBrowse link 19 25,318,736 25,318,822 RGD:1624291
G Mir27b microRNA 27b JBrowse link 17 823,461 823,557 RGD:1624291
G Pdgfb platelet derived growth factor subunit B JBrowse link 7 121,215,458 121,233,092 RGD:1624291
G Pdgfra platelet derived growth factor receptor alpha JBrowse link 14 35,527,926 35,581,130 RGD:1600115
RGD:1624291
G Pdgfrb platelet derived growth factor receptor beta JBrowse link 18 56,364,586 56,406,381 RGD:1600115
RGD:1624291
G Rom1 retinal outer segment membrane protein 1 JBrowse link 1 225,126,732 225,128,740 RGD:1624291
RGD:1600115
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arhgef15 Rho guanine nucleotide exchange factor 15 JBrowse link 10 55,532,097 55,545,675 RGD:1624291
RGD:1600115
G Clic4 chloride intracellular channel 4 JBrowse link 5 153,568,937 153,625,669 RGD:1624291
RGD:1600115
G Fzd4 frizzled class receptor 4 JBrowse link 1 153,589,471 153,598,376 RGD:1624291
RGD:13792537
G Lrp5 LDL receptor related protein 5 JBrowse link 1 218,816,833 218,920,147 RGD:1624291
G Ndp norrin cystine knot growth factor NDP JBrowse link X 6,791,090 6,815,586 RGD:1624291
G Nrp1 neuropilin 1 JBrowse link 19 61,332,351 61,486,166 RGD:1624291
RGD:1600115
G Rhoj ras homolog family member J JBrowse link 6 98,284,361 98,367,122 RGD:1624291
RGD:1600115
G Slc4a7 solute carrier family 4 member 7 JBrowse link 15 11,832,611 11,912,923 RGD:1624291
retinal bipolar neuron differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bhlhe22 basic helix-loop-helix family, member e22 JBrowse link 2 102,685,513 102,688,624 RGD:1624291
G Cabp4 calcium binding protein 4 JBrowse link 1 219,383,452 219,388,009 RGD:1624291
RGD:1600115
G Casz1 castor zinc finger 1 JBrowse link 5 165,625,119 165,777,053 RGD:1624291
G Ikzf1 IKAROS family zinc finger 1 JBrowse link 14 91,782,281 91,867,828 RGD:1624291
G Irx5 iroquois homeobox 5 JBrowse link 19 16,415,813 16,421,088 RGD:1624291
RGD:1600115
G Irx6 iroquois homeobox 6 JBrowse link 19 15,726,633 15,733,442 RGD:1624291
G Vsx1 visual system homeobox 1 JBrowse link 3 146,484,235 146,494,757 RGD:1624291
RGD:1600115
G Vsx2 visual system homeobox 2 JBrowse link 6 108,285,031 108,308,588 RGD:1624291
G Zhx2 zinc fingers and homeoboxes 2 JBrowse link 7 97,559,653 97,707,872 RGD:1624291
RGD:1600115
retinal blood vessel morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col4a1 collagen type IV alpha 1 chain JBrowse link 16 83,522,162 83,632,153 RGD:1624291
RGD:1600115
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 JBrowse link 6 2,308,179 2,316,739 RGD:1600115
RGD:1624291
G Fzd4 frizzled class receptor 4 JBrowse link 1 153,589,471 153,598,376 RGD:1624291
RGD:1600115
G Lama1 laminin subunit alpha 1 JBrowse link 9 115,916,907 116,042,123 RGD:1624291
RGD:1600115
G Lrp5 LDL receptor related protein 5 JBrowse link 1 218,816,833 218,920,147 RGD:1624291
RGD:13792537
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1624291
retinal cone cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1624291
G Cabp4 calcium binding protein 4 JBrowse link 1 219,383,452 219,388,009 RGD:1624291
RGD:1600115
G Cnga3 cyclic nucleotide gated channel alpha 3 JBrowse link 9 43,807,412 43,858,225 RGD:1624291
G Dio3 iodothyronine deiodinase 3 JBrowse link 6 134,627,278 134,629,139 RGD:1624291
G Gnat2 G protein subunit alpha transducin 2 JBrowse link 2 210,880,754 210,890,765 RGD:1624291
RGD:1600115
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 JBrowse link 2 50,099,576 50,499,799 RGD:1624291
RGD:1600115
G Mir124-1 microRNA 124-1 JBrowse link 15 47,964,298 47,964,382 RGD:1624291
G Mir124-2 microRNA 124-2 JBrowse link 2 102,311,603 102,311,711 RGD:1624291
G Mir183 microRNA 183 JBrowse link 4 57,463,569 57,463,678 RGD:1624291
G Mir96 microRNA 96 JBrowse link 4 57,463,366 57,463,471 RGD:1624291
G Pde6c phosphodiesterase 6C JBrowse link 1 256,822,099 256,885,879 RGD:1624291
RGD:1600115
G Rorb RAR-related orphan receptor B JBrowse link 1 234,252,757 234,442,597 RGD:1600115
RGD:1624291
G Rp1 RP1, axonemal microtubule associated JBrowse link 5 15,005,028 15,060,508 RGD:1624291
RGD:1600115
G Thrb thyroid hormone receptor beta JBrowse link 15 8,890,578 9,239,815 RGD:1600115
RGD:1624291
G Thy1 Thy-1 cell surface antigen JBrowse link 8 48,382,121 48,387,271 RGD:1624291
RGD:13792537
RGD:1600115
G Ush1c USH1 protein network component harmonin JBrowse link 1 102,207,096 102,256,779 RGD:13792537
retinal pigment epithelium development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ihh Indian hedgehog signaling molecule JBrowse link 9 82,208,223 82,214,440 RGD:1624291
RGD:1600115
G Med1 mediator complex subunit 1 JBrowse link 10 86,101,560 86,145,271 RGD:1624291
RGD:1600115
G Pax2 paired box 2 JBrowse link 1 264,493,579 264,585,073 RGD:1624291
RGD:1600115
G Rarb retinoic acid receptor, beta JBrowse link 15 9,915,223 10,262,599 RGD:1624291
G Rarg retinoic acid receptor, gamma JBrowse link 7 143,840,739 143,863,206 RGD:1624291
G Tbc1d32 TBC1 domain family, member 32 JBrowse link 20 37,463,879 37,701,268 RGD:1624291
RGD:1600115
retinal rod cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ptn pleiotrophin JBrowse link 4 64,239,156 64,330,996 RGD:9831439
G Sox8 SRY box 8 JBrowse link 10 14,932,348 14,937,336 RGD:1624291
RGD:1600115
G Sox9 SRY box 9 JBrowse link 10 101,288,528 101,294,030 RGD:1624291
RGD:1600115
retinal rod cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casz1 castor zinc finger 1 JBrowse link 5 165,625,119 165,777,053 RGD:1624291
rod bipolar cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ptn pleiotrophin JBrowse link 4 64,239,156 64,330,996 RGD:9831439

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17896
    developmental process 6323
      anatomical structure development 5930
        retina development in camera-type eye 194
          negative regulation of retina development in camera-type eye + 2
          neural retina development + 78
          positive regulation of retina development in camera-type eye + 2
          regulation of retina development in camera-type eye + 8
          retina morphogenesis in camera-type eye + 64
          retina vasculature development in camera-type eye + 26
          retinal pigment epithelium development 6
Path 2
Term Annotations click to browse term
  biological_process 17896
    developmental process 6323
      anatomical structure development 5930
        multicellular organism development 5425
          system development 5004
            animal organ development 3820
              sensory organ development 650
                eye development 425
                  camera-type eye development 374
                    retina development in camera-type eye 194
                      negative regulation of retina development in camera-type eye + 2
                      neural retina development + 78
                      positive regulation of retina development in camera-type eye + 2
                      regulation of retina development in camera-type eye + 8
                      retina morphogenesis in camera-type eye + 64
                      retina vasculature development in camera-type eye + 26
                      retinal pigment epithelium development 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.