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ONTOLOGY REPORT - ANNOTATIONS


Term:retina development in camera-type eye
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Accession:GO:0060041 term browser browse the term
Definition:The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
Synonyms:exact_synonym: retina development in camera-style eye
 related_synonym: retinal development
 alt_id: GO:0002073


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retina development in camera-type eye term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase ISO
IEA
MGI:MGI:2179948 (MGI:MGI:3603700|PMID:15579149)
GO_REF:0000107
RGD
Ensembl
PMID:15579149 GO_REF:0000107, MGI:MGI:3603700 NCBI chr12:22,472,358...22,477,052
Ensembl chr12:22,472,358...22,478,753
JBrowse link
G Actb actin, beta IEP RGD PMID:22916200 RGD:9587758 NCBI chr12:13,715,843...13,718,813
Ensembl chr12:13,715,843...13,718,841
JBrowse link
G Agtpbp1 ATP/GTP binding protein 1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:5,510,009...5,614,416
Ensembl chr17:5,511,385...5,614,435
JBrowse link
G Ahi1 Abelson helper integration site 1 ISO MGI:MGI:4360696 (MGI:MGI:4461813|PMID:20592197) RGD PMID:20592197 MGI:MGI:4461813 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO MGI:MGI:1857951 (MGI:MGI:3699582|PMID:10982921) RGD PMID:10982921 MGI:MGI:3699582 NCBI chr18:27,011,710...27,106,323
Ensembl chr18:27,047,382...27,105,531
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO
IEA
MGI:MGI:1857429 (MGI:MGI:1277631|PMID:9699561)
GO_REF:0000107
RGD
Ensembl
PMID:9699561 GO_REF:0000107, MGI:MGI:1277631 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEP RGD PMID:17069773 RGD:2289001 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO MGI:MGI:2158497 (MGI:MGI:2654391|PMID:12654290) RGD PMID:12654290 MGI:MGI:2654391 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 IEP RGD PMID:10482474 RGD:5129487 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G C3 complement C3 ISO (MGI:MGI:5883383|PMID:28057640) RGD PMID:28057640 MGI:MGI:5883383 NCBI chr 9:9,721,137...9,747,084
Ensembl chr 9:9,721,105...9,747,167
JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F ISO MGI:MGI:3605845 (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr  X:15,712,709...15,741,135
Ensembl chr  X:15,712,713...15,741,103
JBrowse link
G Calb1 calbindin 1 ISO (PMID:10741426) RGD PMID:10741426 NCBI chr 5:29,538,380...29,562,774
Ensembl chr 5:29,538,380...29,562,773
JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link
G Cfd complement factor D ISO (MGI:MGI:5883383|PMID:28057640) RGD PMID:28057640 MGI:MGI:5883383 NCBI chr 7:12,634,216...12,635,939
Ensembl chr 7:12,634,216...12,635,943
JBrowse link
G Cfh complement factor H ISO (MGI:MGI:3760334|PMID:17921253), (MGI:MGI:5883383|PMID:28057640), (MGI:MGI:6304909|PMID:30705315) RGD PMID:17921253, PMID:28057640, PMID:30705315 MGI:MGI:3760334, MGI:MGI:5883383, MGI:MGI:6304909 NCBI chr13:56,979,155...57,080,540
Ensembl chr13:56,978,607...57,080,622
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 ISO (PMID:15300250) RGD PMID:15300250 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Clcn2 chloride voltage-gated channel 2 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr11:82,862,664...82,876,165
Ensembl chr11:83,883,879...83,897,394
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein ISO MGI:MGI:1856959 (MGI:MGI:3695117|PMID:15565184), (MGI:MGI:4849309|PMID:21052544) RGD PMID:15565184, PMID:21052544 MGI:MGI:3695117, MGI:MGI:4849309 NCBI chr16:79,828,321...79,838,212
Ensembl chr16:79,828,324...79,838,212
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:5315300|PMID:22447858), (MGI:MGI:5608935|PMID:25147295) RGD PMID:22447858, PMID:25147295 MGI:MGI:5315300, MGI:MGI:5608935 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Crx cone-rod homeobox ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 1:77,744,593...77,758,913
Ensembl chr 1:77,745,288...77,750,960
JBrowse link
G Dcx doublecortin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:115,098,675...115,175,515
Ensembl chr  X:115,098,675...115,175,299
JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO
ISS
(MGI:MGI:3848562|PMID:19389377)
GO_REF:0000024
RGD
UniProt
PMID:19389377 GO_REF:0000024, MGI:MGI:3848562 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Drd4 dopamine receptor D4 IEP RGD PMID:18778704 RGD:7175073 NCBI chr 1:214,278,296...214,282,818
Ensembl chr 1:214,278,296...214,281,483
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 IEP RGD PMID:23954924 RGD:11251759 NCBI chr17:20,090,136...20,182,332
Ensembl chr17:20,090,246...20,182,206
JBrowse link
G Gdnf glial cell derived neurotrophic factor IEP RGD PMID:16650834 RGD:2324945 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Gnb1 G protein subunit beta 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 5:172,914,025...172,981,403
Ensembl chr 5:172,934,990...172,979,986
JBrowse link
G Grm6 glutamate metabotropic receptor 6 ISO MGI:MGI:3605835 (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr10:36,345,503...36,363,416
Ensembl chr10:36,345,939...36,360,665
JBrowse link
G Hpca hippocalcin IEP RGD PMID:7789406 RGD:9686441 NCBI chr 5:147,295,124...147,305,757
Ensembl chr 5:147,294,820...147,303,346
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 1:261,989,178...262,015,282
Ensembl chr 1:261,989,178...262,015,153
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO MGI:MGI:2158690 (MGI:MGI:3831471|PMID:18940586) RGD PMID:18940586 MGI:MGI:3831471 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Il4 interleukin 4 IEP RGD PMID:23070471 RGD:7829830 NCBI chr10:38,963,979...38,969,531
Ensembl chr10:38,963,979...38,969,531
JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 4:56,478,383...56,493,987
Ensembl chr 4:56,478,384...56,493,923
JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 8:117,346,983...117,351,619
Ensembl chr 8:117,347,029...117,351,610
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISO MGI:MGI:3580706 (MGI:MGI:3580691|PMID:15345036) RGD PMID:15345036 MGI:MGI:3580691 NCBI chr10:105,781,752...105,787,803
Ensembl chr10:105,781,753...105,787,803
JBrowse link
G Lama1 laminin subunit alpha 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 9:115,916,907...116,042,123
Ensembl chr 9:115,916,907...116,042,123
JBrowse link
G Lamb2 laminin subunit beta 2 ISO
IEA
MGI:MGI:1344394 (MGI:MGI:4454394|PMID:19907020)
GO_REF:0000107
RGD
Ensembl
PMID:19907020 GO_REF:0000107, MGI:MGI:4454394 NCBI chr 8:117,268,335...117,280,517
Ensembl chr 8:117,268,337...117,280,517
JBrowse link
G Lamc3 laminin subunit gamma 3 ISO MGI:MGI:99916 (MGI:MGI:4454394|PMID:19907020) RGD PMID:19907020 MGI:MGI:4454394 NCBI chr 3:9,265,407...9,327,107
Ensembl chr 3:9,267,122...9,326,993
JBrowse link
G Lhx1 LIM homeobox 1 ISO (PMID:10741426) RGD PMID:10741426 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lhx2 LIM homeobox 2 ISO
IEA
MGI:MGI:97490 (MGI:MGI:3836385|PMID:19146846)
GO_REF:0000107
RGD
Ensembl
PMID:19146846 GO_REF:0000107, MGI:MGI:3836385 NCBI chr 3:22,628,674...22,658,447
Ensembl chr 3:22,640,545...22,658,446
JBrowse link
G Lif LIF, interleukin 6 family cytokine IDA RGD PMID:16643897 RGD:2326157 NCBI chr14:84,482,652...84,500,574
Ensembl chr14:84,482,674...84,500,642
JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 1:32,379,431...32,429,917
Ensembl chr 1:32,379,432...32,429,917
JBrowse link
G Max MYC associated factor X IEP RGD PMID:14603520 RGD:2316820 NCBI chr 6:99,984,260...100,011,460
Ensembl chr 6:99,984,260...100,011,388
JBrowse link
G Mdm1 Mdm1 nuclear protein ISO
IBA
MGI:MGI:2664154 (MGI:MGI:4849309|PMID:21052544)
PMID:21873635
RGD PMID:21052544, PMID:21873635 MGI:MGI:4849309, RGD:13792537 NCBI chr 7:61,165,652...61,200,865
Ensembl chr 7:61,165,640...61,200,879
JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 3:121,235,230...121,340,932
Ensembl chr 3:121,235,119...121,342,444
JBrowse link
G Mfrp membrane frizzled-related protein ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 8:48,437,720...48,443,421
Ensembl chr 8:48,437,918...48,443,421
JBrowse link
G Mir183 microRNA 183 ISO MGI:MGI:2676846|MGI:MGI:3619440 (MGI:MGI:5469752|PMID:23341629), (MGI:MGI:6108693|PMID:28819115) RGD PMID:23341629, PMID:28819115 MGI:MGI:5469752, MGI:MGI:6108693 NCBI chr 4:57,463,569...57,463,678
Ensembl chr 4:57,463,569...57,463,678
JBrowse link
G Mir96 microRNA 96 ISO MGI:MGI:2676846|MGI:MGI:2676847 (MGI:MGI:5469752|PMID:23341629), (MGI:MGI:6108693|PMID:28819115) RGD PMID:23341629, PMID:28819115 MGI:MGI:5469752, MGI:MGI:6108693 NCBI chr 4:57,463,366...57,463,471
Ensembl chr 4:57,463,366...57,463,471
JBrowse link
G Musk muscle associated receptor tyrosine kinase IEP RGD PMID:16899069 RGD:2317091 NCBI chr 5:75,392,790...75,498,694
Ensembl chr 5:75,392,790...75,498,694
JBrowse link
G Myh10 myosin heavy chain 10 IEA
ISO
GO_REF:0000107
MGI:MGI:2386445 (MGI:MGI:1099556|PMID:9356462), (MGI:MGI:1933038|PMID:11283949)
Ensembl
RGD
PMID:9356462, PMID:11283949 GO_REF:0000107, MGI:MGI:1099556, MGI:MGI:1933038 NCBI chr10:55,274,910...55,406,738
Ensembl chr10:55,275,411...55,406,732
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO MGI:MGI:3605480 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr 8:48,094,233...48,198,499
Ensembl chr 8:48,094,673...48,157,305
JBrowse link
G Neurod4 neuronal differentiation 4 IEP RGD PMID:15345241 RGD:2311603 NCBI chr 7:9,699,964...9,712,067
Ensembl chr 7:9,699,961...9,711,928
JBrowse link
G Nos3 nitric oxide synthase 3 IEP RGD PMID:16639026 RGD:7771562 NCBI chr 4:7,321,908...7,342,404
Ensembl chr 4:7,320,668...7,342,410
JBrowse link
G Nphp1 nephrocystin 1 ISO (MGI:MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:MGI:3839506 NCBI chr 3:120,316,048...120,370,089
Ensembl chr 3:120,316,047...120,373,500
JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 5:169,647,581...169,744,662
Ensembl chr 5:169,659,188...169,744,660
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 ISO MGI:MGI:2176490|MGI:MGI:2176560 (MGI:MGI:2151063|PMID:11997145), (MGI:MGI:3624573|PMID:16702404) RGD PMID:11997145, PMID:16702404 MGI:MGI:2151063, MGI:MGI:3624573 NCBI chr20:47,286,843...47,306,318
Ensembl chr20:47,288,137...47,306,318
JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 ISO MGI:MGI:1346317 (MGI:MGI:3624051|PMID:12407160), (MGI:MGI:4849309|PMID:21052544) RGD PMID:12407160, PMID:21052544 MGI:MGI:3624051, MGI:MGI:4849309 NCBI chr 8:64,797,518...64,801,587
Ensembl chr 8:64,797,518...64,800,467
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO (MGI:MGI:5619875|PMID:25542970) RGD PMID:25542970 MGI:MGI:5619875 NCBI chr17:5,934,651...6,245,778
Ensembl chr17:5,933,729...6,244,676
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IEP RGD PMID:15505078 RGD:1547836 NCBI chr11:74,717,600...74,793,902
Ensembl chr11:74,720,254...74,793,803
JBrowse link
G Pax4 paired box 4 IEP RGD PMID:19012751 RGD:2311636 NCBI chr 4:55,735,640...55,753,461
Ensembl chr 4:55,735,682...55,740,627
JBrowse link
G Pax6 paired box 6 IEP
IEA
ISO
GO_REF:0000107
MGI:MGI:96785 (MGI:MGI:3836385|PMID:19146846)
Ensembl
RGD
PMID:19146846, PMID:19012751 GO_REF:0000107, MGI:MGI:3836385, RGD:2311636 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pde6a phosphodiesterase 6A ISO
IBA
(MGI:MGI:4849309|PMID:21052544)
PMID:21873635
RGD PMID:21052544, PMID:21873635 MGI:MGI:4849309, RGD:13792537 NCBI chr18:56,544,652...56,617,480
Ensembl chr18:56,544,652...56,617,480
JBrowse link
G Pde6b phosphodiesterase 6B ISO
IBA
(MGI:MGI:4849309|PMID:21052544)
PMID:21873635
RGD PMID:21052544, PMID:21873635 MGI:MGI:4849309, RGD:13792537 NCBI chr14:2,328,690...2,371,913
Ensembl chr14:2,328,750...2,371,883
JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO MGI:MGI:2670574 (MGI:MGI:5607451|PMID:25224828) RGD PMID:25224828 MGI:MGI:5607451 NCBI chr 7:121,215,458...121,233,092
Ensembl chr 7:121,214,628...121,232,741
JBrowse link
G Pfdn5 prefoldin subunit 5 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 7:143,924,662...143,929,400
Ensembl chr 7:143,924,662...143,929,397
JBrowse link
G Pou4f2 POU class 4 homeobox 2 ISO MGI:MGI:2176272|MGI:MGI:3582493 (MGI:MGI:3621691|PMID:9630743), (MGI:MGI:80981|PMID:8637595) RGD PMID:8637595, PMID:9630743 MGI:MGI:3621691, MGI:MGI:80981 NCBI chr19:33,160,180...33,163,821
Ensembl chr19:33,160,180...33,163,821
JBrowse link
G Prph2 peripherin 2 ISO MGI:MGI:1856523|MGI:MGI:6367794|MGI:MGI:97998 (MGI:MGI:3610839|PMID:15964665), (MGI:MGI:4849309|PMID:21052544), (MGI:MGI:5905515|PMID:28053051) RGD PMID:15964665, PMID:21052544, PMID:28053051 MGI:MGI:3610839, MGI:MGI:4849309, MGI:MGI:5905515 NCBI chr 9:16,085,933...16,386,176 JBrowse link
G Ptn pleiotrophin IEP RGD PMID:16914133, PMID:8453763 RGD:9831439, RGD:9831456 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Rarb retinoic acid receptor, beta ISO MGI:MGI:97858 (MGI:MGI:81656|PMID:8681798) RGD PMID:8681798 MGI:MGI:81656 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:MGI:97857 (MGI:MGI:81656|PMID:8681798) RGD PMID:8681798 MGI:MGI:81656 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Rbp4 retinol binding protein 4 ISO MGI:MGI:2445721 (MGI:MGI:2150869|PMID:11562477) RGD PMID:11562477 MGI:MGI:2150869 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
G Rd3 retinal degeneration 3, GUCY2D regulator IBA
ISO
PMID:21873635
(MGI:MGI:4849309|PMID:21052544), (MGI:MGI:52860|PMID:8486383)
RGD PMID:8486383, PMID:21052544, PMID:21873635 MGI:MGI:4849309, MGI:MGI:52860, RGD:13792537 NCBI chr13:110,739,645...110,749,167
Ensembl chr13:110,743,098...110,748,365
JBrowse link
G Ret ret proto-oncogene IEP RGD PMID:16650834 RGD:2324945 NCBI chr 4:150,202,170...150,249,196
Ensembl chr 4:150,202,058...150,244,372
JBrowse link
G Rho rhodopsin ISO
IEA
(MGI:MGI:4849309|PMID:21052544)
GO_REF:0000107
RGD
Ensembl
PMID:21052544 GO_REF:0000107, MGI:MGI:4849309 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
G Rnpep arginyl aminopeptidase IEP RGD PMID:15500823 RGD:2325937 NCBI chr13:52,092,863...52,124,006
Ensembl chr13:52,092,859...52,111,363
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO MGI:MGI:102791|MGI:MGI:2181662 (MGI:MGI:5905515|PMID:28053051) RGD PMID:28053051 MGI:MGI:5905515 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
G Rorb RAR-related orphan receptor B ISO
ISS
(MGI:MGI:5546314|PMID:23652001)
GO_REF:0000024
RGD
UniProt
PMID:23652001 GO_REF:0000024, MGI:MGI:5546314 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO
IBA
(MGI:MGI:4849309|PMID:21052544)
PMID:21873635
RGD PMID:21052544, PMID:21873635 MGI:MGI:4849309, RGD:13792537 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rp1l1 RP1 like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:47,344,380...47,384,461
Ensembl chr15:47,373,120...47,383,508
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
JBrowse link
G Rpl24 ribosomal protein L24 ISO MGI:MGI:1856685 (MGI:MGI:1097191|PMID:9331275), (MGI:MGI:1332363|PMID:10049578) RGD PMID:9331275, PMID:10049578 MGI:MGI:1097191, MGI:MGI:1332363 NCBI chr11:47,116,885...47,122,093
Ensembl chr11:47,116,886...47,122,095
JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 IEP RGD PMID:2647502 RGD:5133699 NCBI chr 1:167,538,387...167,562,688
Ensembl chr 1:167,538,263...167,562,688
JBrowse link
G Serpinf1 serpin family F member 1 IEP RGD PMID:21738387 RGD:8655555 NCBI chr10:62,241,750...62,254,145
Ensembl chr10:62,241,756...62,254,287
JBrowse link
G Ski SKI proto-oncogene ISO MGI:MGI:2177555 (MGI:MGI:3693412|PMID:17003410) RGD PMID:17003410 MGI:MGI:3693412 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Slc4a5 solute carrier family 4 member 5 ISO (MGI:MGI:5292606|PMID:21705333) RGD PMID:21705333 MGI:MGI:5292606 NCBI chr 4:114,918,488...115,002,290
Ensembl chr 4:114,918,488...115,002,300
JBrowse link
G Sox8 SRY-box transcription factor 8 ISO
ISS
MGI:MGI:98371 (MGI:MGI:4368088|PMID:19490914)
GO_REF:0000024
RGD
UniProt
PMID:19490914 GO_REF:0000024, MGI:MGI:4368088 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO
ISS
MGI:MGI:98370 (MGI:MGI:4368088|PMID:19490914)
GO_REF:0000024
RGD
UniProt
PMID:19490914 GO_REF:0000024, MGI:MGI:4368088 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 ISO MGI:MGI:4440463 (MGI:MGI:4439200|PMID:20159594) RGD PMID:20159594 MGI:MGI:4439200 NCBI chr20:37,463,879...37,701,268
Ensembl chr20:37,465,278...37,700,937
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO MGI:MGI:3852642 (MGI:MGI:4819740|PMID:20711468) RGD PMID:20711468 MGI:MGI:4819740 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 2:22,746,290...22,798,252
Ensembl chr 2:22,747,547...22,798,214
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 ISO (MGI:MGI:3826282|PMID:18973577) RGD PMID:18973577 MGI:MGI:3826282 NCBI chr 9:119,181,079...119,190,698
Ensembl chr 9:119,181,083...119,190,698
JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 ISO (MGI:MGI:3826300|PMID:18926818) RGD PMID:18926818 MGI:MGI:3826300 NCBI chr 3:152,906,961...152,924,380
Ensembl chr 3:152,909,189...152,924,377
JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 ISO (PMID:24791901) RGD PMID:24791901 NCBI chr 6:109,693,915...109,910,479
Ensembl chr 6:109,710,781...109,879,607
JBrowse link
G Tub TUB bipartite transcription factor ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 1:173,550,929...173,629,550
Ensembl chr 1:173,607,101...173,625,550
JBrowse link
G Tulp1 TUB like protein 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr20:7,931,673...7,943,601
Ensembl chr20:7,931,674...7,943,575
JBrowse link
G Uchl3 ubiquitin C-terminal hydrolase L3 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr15:86,153,624...86,198,127
Ensembl chr15:86,153,628...86,198,127
JBrowse link
G Ush2a usherin IEP RGD PMID:12160733 RGD:634438 NCBI chr13:106,750,738...107,434,195
Ensembl chr13:106,751,625...107,427,329
JBrowse link
G Vax2 ventral anterior homeobox 2 ISO
IEA
(MGI:MGI:1349226|PMID:10595508)
GO_REF:0000107
RGD
Ensembl
PMID:10595508 GO_REF:0000107, MGI:MGI:1349226 NCBI chr 4:115,388,839...115,412,515
Ensembl chr 4:115,388,839...115,412,515
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 3:141,224,858...141,298,272
Ensembl chr 3:141,225,290...141,298,265
JBrowse link
G Zfp513 zinc finger protein 513 ISO
ISS
(PMID:20797688)
GO_REF:0000024
RGD
UniProt
PMID:20797688 GO_REF:0000024 NCBI chr 6:26,537,707...26,541,051
Ensembl chr 6:26,537,707...26,541,048
JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn4 forkhead box N4 ISO (MGI:MGI:3054139|PMID:15363391) RGD PMID:15363391 MGI:MGI:3054139 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Miat myocardial infarction associated transcript ISO (MGI:MGI:4458994|PMID:20459797) RGD PMID:20459797 MGI:MGI:4458994 NCBI chr12:50,447,251...50,461,859 JBrowse link
G Neurod1 neuronal differentiation 1 ISO
ISS
(MGI:MGI:2158684|PMID:11861467)
GO_REF:0000024
RGD
UniProt
PMID:11861467 GO_REF:0000024, MGI:MGI:2158684 NCBI chr 3:66,414,314...66,417,617
Ensembl chr 3:66,414,308...66,417,741
JBrowse link
G Neurod4 neuronal differentiation 4 ISO (MGI:MGI:2158684|PMID:11861467) RGD PMID:11861467 MGI:MGI:2158684 NCBI chr 7:9,699,964...9,712,067
Ensembl chr 7:9,699,961...9,711,928
JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO
ISS
(MGI:MGI:3691257|PMID:17075007)
GO_REF:0000024
RGD
UniProt
PMID:17075007 GO_REF:0000024, MGI:MGI:3691257 NCBI chr17:86,199,623...86,201,477
Ensembl chr17:86,199,623...86,201,477
JBrowse link
G Rorb RAR-related orphan receptor B ISO
ISS
(MGI:MGI:5546314|PMID:23652001)
GO_REF:0000024
RGD
UniProt
PMID:23652001 GO_REF:0000024, MGI:MGI:5546314 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:37,004,776...37,599,866
Ensembl chr11:37,004,902...37,253,776
JBrowse link
G Prom1 prominin 1 ISO
IBA
(PMID:18654668)
PMID:21873635
(MGI:MGI:3838023|PMID:19228982)
RGD PMID:18654668, PMID:19228982, PMID:21873635 MGI:MGI:3838023, RGD:13792537 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:MGI:4437581|PMID:20300562) RGD PMID:20300562 MGI:MGI:4437581 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 ISO (MGI:MGI:5693671|PMID:26287463) RGD PMID:26287463 MGI:MGI:5693671 NCBI chr10:102,299,593...102,576,554
Ensembl chr10:102,303,028...102,576,878
JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO GO:0060219 (MGI:MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:MGI:2680888 NCBI chr15:11,832,611...11,912,923
Ensembl chr15:11,836,286...11,912,916
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 ISO MGI:MGI:5140723 (MGI:MGI:5014119|PMID:21646512) RGD PMID:21646512 MGI:MGI:5014119 NCBI chr 6:122,920,308...122,974,525
Ensembl chr 6:122,920,317...122,974,522
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated ISO
IEA
MGI:MGI:2653120 (MGI:MGI:4422144|PMID:19754878)
GO_REF:0000107
RGD
Ensembl
PMID:19754878 GO_REF:0000107, MGI:MGI:4422144 NCBI chr 8:36,625,757...36,712,091
Ensembl chr 8:36,625,733...36,710,949
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
(MGI:MGI:3772525|PMID:18094249)
GO_REF:0000024
RGD
UniProt
PMID:18094249 GO_REF:0000024, MGI:MGI:3772525 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:4415718 (MGI:MGI:4413396|PMID:19653321)
PMID:21873635
RGD PMID:19653321, PMID:21873635 MGI:MGI:4413396, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:12692551) RGD PMID:12692551 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Rbp4 retinol binding protein 4 ISO (MGI:MGI:1344892|PMID:10469643) RGD PMID:10469643 MGI:MGI:1344892 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
horizontal cell localization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 ISO (MGI:MGI:3772525|PMID:18094249) RGD PMID:18094249 MGI:MGI:3772525 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO MGI:MGI:3052661|MGI:MGI:4841554 (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
G Pou4f2 POU class 4 homeobox 2 ISO
ISS
(MGI:MGI:5316576|PMID:21875655)
GO_REF:0000024
RGD
UniProt
PMID:21875655 GO_REF:0000024, MGI:MGI:5316576 NCBI chr19:33,160,180...33,163,821
Ensembl chr19:33,160,180...33,163,821
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO MGI:MGI:3052661|MGI:MGI:4841554 (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
neural retina development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A ISO (PMID:18816825) RGD PMID:18816825 NCBI chr 2:119,112,776...119,128,870
Ensembl chr 2:119,112,513...119,129,751
JBrowse link
G Atoh7 atonal bHLH transcription factor 7 ISO MGI:MGI:2159015 (MGI:MGI:5288596|PMID:21441919)
(PMID:21441919)
RGD PMID:21441919 MGI:MGI:5288596 NCBI chr20:27,082,961...27,083,410
Ensembl chr20:27,082,961...27,083,410
JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 7:41,114,606...41,223,138
Ensembl chr 7:41,114,697...41,220,579
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Atp2b3 ATPase plasma membrane Ca2+ transporting 3 IEP RGD PMID:16079002 RGD:2317729 NCBI chr  X:157,236,400...157,312,028
Ensembl chr  X:157,239,306...157,312,028
JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 IEP RGD PMID:16079002 RGD:2317729 NCBI chr13:50,091,644...50,153,808
Ensembl chr13:50,091,430...50,153,823
JBrowse link
G Bsg basigin (Ok blood group) ISS
ISO
GO_REF:0000024
(MGI:MGI:1888850|PMID:10967074), (MGI:MGI:1932603|PMID:11273674), (MGI:MGI:3610672|PMID:11853760)
UniProt
RGD
PMID:10967074, PMID:11273674, PMID:11853760 GO_REF:0000024, MGI:MGI:1888850, MGI:MGI:1932603, MGI:MGI:3610672 NCBI chr 7:12,875,536...12,882,753
Ensembl chr 7:12,875,537...12,882,753
JBrowse link
G Casp2 caspase 2 IEP RGD PMID:9809666 RGD:4107085 NCBI chr 4:71,652,358...71,670,228
Ensembl chr 4:71,652,354...71,670,239
JBrowse link
G Gpm6a glycoprotein m6a ISO
ISS
(MGI:MGI:3811956|PMID:18776950)
GO_REF:0000024
RGD
UniProt
PMID:18776950 GO_REF:0000024, MGI:MGI:3811956 NCBI chr16:39,367,697...39,719,292
Ensembl chr16:39,367,692...39,719,187
JBrowse link
G Optn optineurin IEP RGD PMID:17687037 RGD:7800681 NCBI chr17:77,167,700...77,218,374
Ensembl chr17:77,167,740...77,218,389
JBrowse link
G Psen1 presenilin 1 IEP RGD PMID:12401445 RGD:729595 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Rab11fip4 RAB11 family interacting protein 4 ISO (MGI:MGI:3694624|PMID:17089410) RGD PMID:17089410 MGI:MGI:3694624 NCBI chr10:66,942,363...67,051,672
Ensembl chr10:66,942,398...67,048,308
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IDA RGD PMID:2631392 RGD:9585660 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
G Slc17a6 solute carrier family 17 member 6 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:106,980,463...107,038,717
Ensembl chr 1:106,998,623...107,038,704
JBrowse link
G Slc17a7 solute carrier family 17 member 7 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:101,161,265...101,172,292
Ensembl chr 1:101,161,252...101,173,174
JBrowse link
G Slc17a8 solute carrier family 17 member 8 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 7:30,215,231...30,274,993
Ensembl chr 7:30,216,104...30,274,984
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO
IEA
(PMID:18816825)
GO_REF:0000107
RGD
Ensembl
PMID:18816825 GO_REF:0000107 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 ISO (PMID:18816825) RGD PMID:18816825 NCBI chr 4:7,076,710...7,108,334
Ensembl chr 4:7,076,759...7,108,328
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (MGI:MGI:894212|PMID:9217007) RGD PMID:9217007 MGI:MGI:894212 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5316576|PMID:21875655)
Ensembl
UniProt
RGD
PMID:21875655 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5316576 NCBI chr 3:58,164,931...58,169,521
Ensembl chr 3:58,164,931...58,169,521
JBrowse link
G Dlx2 distal-less homeobox 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5316576|PMID:21875655)
Ensembl
UniProt
RGD
PMID:21875655 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5316576 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc66 coiled-coil domain containing 66 ISO MGI:MGI:3893603 (MGI:MGI:5141557|PMID:21680557) RGD PMID:21680557 MGI:MGI:5141557 NCBI chr16:3,107,119...3,139,188
Ensembl chr16:3,110,239...3,139,177
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:2675211|PMID:12915475), (MGI:MGI:3051713|PMID:15316081), (MGI:MGI:3690408|PMID:16885194) RGD PMID:12915475, PMID:15316081, PMID:16885194 MGI:MGI:2675211, MGI:MGI:3051713, MGI:MGI:3690408 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Dscam DS cell adhesion molecule ISO
IEA
MGI:MGI:3761008 (MGI:MGI:3768917|PMID:18216855)
GO_REF:0000107
RGD
Ensembl
PMID:18216855 GO_REF:0000107, MGI:MGI:3768917 NCBI chr11:37,004,776...37,599,866
Ensembl chr11:37,004,902...37,253,776
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO MGI:MGI:2668595 (MGI:MGI:1334014|PMID:10097103) RGD PMID:10097103 MGI:MGI:1334014 NCBI chr16:81,153,489...81,165,442
Ensembl chr16:81,153,489...81,165,442
JBrowse link
regulation of neural retina development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 ISO (MGI:MGI:5314555|PMID:22323600) RGD PMID:22323600 MGI:MGI:5314555 NCBI chr 3:111,135,011...111,146,746
Ensembl chr 3:111,135,021...111,145,986
JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO
ISS
(MGI:MGI:3691257|PMID:17075007)
GO_REF:0000024
RGD
UniProt
PMID:17075007 GO_REF:0000024, MGI:MGI:3691257 NCBI chr17:86,199,623...86,201,477
Ensembl chr17:86,199,623...86,201,477
JBrowse link
G Six3 SIX homeobox 3 ISO (MGI:MGI:4837018|PMID:20890044) RGD PMID:20890044 MGI:MGI:4837018 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Vsx2 visual system homeobox 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:108,285,031...108,308,588
Ensembl chr 6:108,285,822...108,308,587
JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf4 CUGBP, Elav-like family member 4 ISO (MGI:MGI:5523751|PMID:23932931) RGD PMID:23932931 MGI:MGI:5523751 NCBI chr18:17,689,090...18,079,835
Ensembl chr18:17,698,038...17,716,880
JBrowse link
retina layer formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO
ISS
UniProtKB:F8W3V6 (MGI:MGI:5306539|PMID:21959375)
GO_REF:0000024
RGD
UniProt
PMID:21959375 GO_REF:0000024, MGI:MGI:5306539 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Arl6 ADP-ribosylation factor like GTPase 6 ISO MGI:MGI:4442928|MGI:MGI:5310744 (MGI:MGI:4442100|PMID:20333246), (MGI:MGI:5306530|PMID:22139371) RGD PMID:20333246, PMID:22139371 MGI:MGI:4442100, MGI:MGI:5306530 NCBI chr11:42,858,476...42,884,324
Ensembl chr11:42,858,478...42,884,603
JBrowse link
G Calb1 calbindin 1 ISO (PMID:10741426) RGD PMID:10741426 NCBI chr 5:29,538,380...29,562,774
Ensembl chr 5:29,538,380...29,562,773
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:3696487|PMID:17234588) RGD PMID:17234588 MGI:MGI:3696487 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Dscam DS cell adhesion molecule ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:37,004,776...37,599,866
Ensembl chr11:37,004,902...37,253,776
JBrowse link
G Fat3 FAT atypical cadherin 3 ISO MGI:MGI:1341907 (MGI:MGI:5292419|PMID:21903076) RGD PMID:21903076 MGI:MGI:5292419 NCBI chr 8:14,417,039...15,011,596
Ensembl chr 8:14,417,584...14,880,644
JBrowse link
G Fjx1 four-jointed box kinase 1 ISO MGI:MGI:2444314 (MGI:MGI:5292419|PMID:21903076) RGD PMID:21903076 MGI:MGI:5292419 NCBI chr 3:92,288,818...92,290,919
Ensembl chr 3:92,288,818...92,290,919
JBrowse link
G Foxn4 forkhead box N4 ISO (MGI:MGI:3054139|PMID:15363391) RGD PMID:15363391 MGI:MGI:3054139 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Igfn1 immunoglobulin-like and fibronectin type III domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:52,791,188...52,823,037
Ensembl chr13:52,791,606...52,834,134
JBrowse link
G Irx6 iroquois homeobox 6 ISO MGI:MGI:5448232 (MGI:MGI:5447580|PMID:23172916) RGD PMID:23172916 MGI:MGI:5447580 NCBI chr19:15,726,633...15,733,442
Ensembl chr19:15,727,514...15,733,412
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:3772525|PMID:18094249), (PMID:10741426)
UniProt
RGD
PMID:10741426, PMID:18094249 GO_REF:0000024, MGI:MGI:3772525 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Megf11 multiple EGF-like-domains 11 ISO (MGI:MGI:5316136|PMID:22407321) RGD PMID:22407321 MGI:MGI:5316136 NCBI chr 8:69,859,256...70,191,070
Ensembl chr 8:69,971,778...70,184,742
JBrowse link
G Obsl1 obscurin like cytoskeletal adaptor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:82,673,871...82,699,577
Ensembl chr 9:82,680,384...82,699,551
JBrowse link
G Prom1 prominin 1 ISO (MGI:MGI:3838023|PMID:19228982) RGD PMID:19228982 MGI:MGI:3838023 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO
ISS
(MGI:MGI:3691257|PMID:17075007)
GO_REF:0000024
RGD
UniProt
PMID:17075007 GO_REF:0000024, MGI:MGI:3691257 NCBI chr17:86,199,623...86,201,477
Ensembl chr17:86,199,623...86,201,477
JBrowse link
G Ptprm protein tyrosine phosphatase, receptor type, M ISO
ISS
(PMID:14623235)
GO_REF:0000024
RGD
UniProt
PMID:14623235 GO_REF:0000024 NCBI chr 9:114,846,095...115,555,261
Ensembl chr 9:114,846,095...115,555,261
JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO MGI:MGI:5467544 (MGI:MGI:5462166|PMID:22605914) RGD PMID:22605914 MGI:MGI:5462166 NCBI chr 1:72,956,017...72,983,811
Ensembl chr 1:72,956,026...72,984,350
JBrowse link
G Rs1 retinoschisin 1 ISO MGI:MGI:2179757|MGI:MGI:3056058 (MGI:MGI:2179152|PMID:11983912), (MGI:MGI:3055638|PMID:15326152) RGD PMID:11983912, PMID:15326152 MGI:MGI:2179152, MGI:MGI:3055638 NCBI chr  X:35,749,957...35,777,243
Ensembl chr  X:35,749,957...35,777,243
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 ISO
IBA
(MGI:MGI:5693671|PMID:26287463)
PMID:21873635
RGD PMID:26287463, PMID:21873635 MGI:MGI:5693671, RGD:13792537 NCBI chr10:102,299,593...102,576,554
Ensembl chr10:102,303,028...102,576,878
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
IEA
(PMID:20607706)
GO_REF:0000107
RGD
Ensembl
PMID:20607706 GO_REF:0000107 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tfap2b transcription factor AP-2 beta ISO (PMID:20607706) RGD PMID:20607706 NCBI chr 9:25,410,669...25,440,568
Ensembl chr 9:25,410,669...25,440,411
JBrowse link
G Tspan12 tetraspanin 12 ISO
ISS
(MGI:MGI:4410396|PMID:19837033)
GO_REF:0000024
RGD
UniProt
PMID:19837033 GO_REF:0000024, MGI:MGI:4410396 NCBI chr 4:48,852,823...48,953,240
Ensembl chr 4:48,852,827...48,928,372
JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 ISO MGI:MGI:3707409 (MGI:MGI:3703109|PMID:17092954) RGD PMID:17092954 MGI:MGI:3703109 NCBI chr 2:102,685,513...102,688,624
Ensembl chr 2:102,685,513...102,688,624
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:2675211|PMID:12915475), (MGI:MGI:3696487|PMID:17234588), (MGI:MGI:5608935|PMID:25147295) RGD PMID:12915475, PMID:17234588, PMID:25147295 MGI:MGI:2675211, MGI:MGI:3696487, MGI:MGI:5608935 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3848562|PMID:19389377)
Ensembl
UniProt
RGD
PMID:19389377 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3848562 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO (PMID:15346351) RGD PMID:15346351 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:2156191 (MGI:MGI:3823171|PMID:18985738) RGD PMID:18985738 MGI:MGI:3823171 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Man2a1 mannosidase, alpha, class 2A, member 1 ISO MGI:MGI:2159011|MGI:MGI:2673381 (MGI:MGI:4453938|PMID:20144606) RGD PMID:20144606 MGI:MGI:4453938 NCBI chr 9:112,293,388...112,451,677
Ensembl chr 9:112,293,388...112,451,677
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A ISO (MGI:MGI:5789479|PMID:27008858) RGD PMID:27008858 MGI:MGI:5789479 NCBI chr 5:140,642,865...140,657,759
Ensembl chr 5:140,642,885...140,657,745
JBrowse link
G Nectin3 nectin cell adhesion molecule 3 ISO MGI:MGI:3605481 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr11:57,897,879...57,995,193
Ensembl chr11:57,897,879...57,993,548
JBrowse link
G Prom1 prominin 1 ISO (PMID:18654668) RGD PMID:18654668 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO MGI:MGI:3701996 (MGI:MGI:3701413|PMID:17301087) RGD PMID:17301087 MGI:MGI:3701413 NCBI chr17:86,199,623...86,201,477
Ensembl chr17:86,199,623...86,201,477
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:MGI:4437581|PMID:20300562) RGD PMID:20300562 MGI:MGI:4437581 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO MGI:MGI:2386674 (MGI:MGI:1354839|PMID:10725384) RGD PMID:10725384 MGI:MGI:1354839 NCBI chr  X:14,271,012...14,331,745
Ensembl chr  X:14,271,017...14,331,486
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO MGI:MGI:3625176 (MGI:MGI:3624065|PMID:16651659) RGD PMID:16651659 MGI:MGI:3624065 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Vsx2 visual system homeobox 2 ISO MGI:MGI:1856112 (MGI:MGI:3701027|PMID:16854970), (MGI:MGI:79586|PMID:8630490) RGD PMID:8630490, PMID:16854970 MGI:MGI:3701027, MGI:MGI:79586 NCBI chr 6:108,285,031...108,308,588
Ensembl chr 6:108,285,822...108,308,587
JBrowse link
retina vasculature development in camera-type eye term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B ISO
IEA
(MGI:MGI:4436974|PMID:19903896)
GO_REF:0000107
RGD
Ensembl
PMID:19903896 GO_REF:0000107, MGI:MGI:4436974 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Acvrl1 activin A receptor like type 1 ISO (MGI:MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:MGI:4436974 NCBI chr 7:142,769,942...142,787,336
Ensembl chr 7:142,776,252...142,787,335
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO (MGI:MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:MGI:4436974 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 ISO MGI:MGI:2154690 (MGI:MGI:3829820|PMID:19005183) RGD PMID:19005183 MGI:MGI:3829820 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO
IEA
MGI:MGI:2386679 (MGI:MGI:4950335|PMID:21212189)
GO_REF:0000107
RGD
Ensembl
PMID:21212189 GO_REF:0000107, MGI:MGI:4950335 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Mir218-2 microRNA 218-2 ISO (MGI:MGI:5297649|PMID:20947829) RGD PMID:20947829 MGI:MGI:5297649 NCBI chr10:20,428,661...20,428,770
Ensembl chr10:20,428,661...20,428,770
JBrowse link
G Mir23a microRNA 23a ISO (MGI:MGI:5002393|PMID:21536891) RGD PMID:21536891 MGI:MGI:5002393 NCBI chr19:25,318,582...25,318,656
Ensembl chr19:25,318,582...25,318,656
JBrowse link
G Mir23b microRNA 23b ISO (MGI:MGI:5002393|PMID:21536891) RGD PMID:21536891 MGI:MGI:5002393 NCBI chr17:823,222...823,318
Ensembl chr17:823,222...823,318
JBrowse link
G Mir24-2 microRNA 24-2 ISO (MGI:MGI:5002393|PMID:21536891) RGD PMID:21536891 MGI:MGI:5002393 NCBI chr19:25,318,863...25,318,970
Ensembl chr19:25,318,863...25,318,970
JBrowse link
G Mir27a microRNA 27a ISO (MGI:MGI:5002393|PMID:21536891) RGD PMID:21536891 MGI:MGI:5002393 NCBI chr19:25,318,736...25,318,822
Ensembl chr19:25,318,736...25,318,822
JBrowse link
G Mir27b microRNA 27b ISO (MGI:MGI:5002393|PMID:21536891) RGD PMID:21536891 MGI:MGI:5002393 NCBI chr17:823,461...823,557
Ensembl chr17:823,461...823,557
JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO MGI:MGI:2670574 (MGI:MGI:5607451|PMID:25224828) RGD PMID:25224828 MGI:MGI:5607451 NCBI chr 7:121,215,458...121,233,092
Ensembl chr 7:121,214,628...121,232,741
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
UniProtKB:P05622 (MGI:MGI:1931346|PMID:11239463)
Ensembl
UniProt
RGD
PMID:11239463 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1931346 NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta ISS
ISO
GO_REF:0000024
UniProtKB:P26618 (MGI:MGI:1931346|PMID:11239463), (MGI:MGI:2680741|PMID:14624252)
UniProt
RGD
PMID:11239463, PMID:14624252 GO_REF:0000024, MGI:MGI:1931346, MGI:MGI:2680741 NCBI chr18:56,364,586...56,406,381
Ensembl chr18:56,364,620...56,406,381
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:MGI:4437581|PMID:20300562) RGD PMID:20300562 MGI:MGI:4437581 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef15 Rho guanine nucleotide exchange factor 15 ISO MGI:MGI:3812708 (MGI:MGI:5441394|PMID:22535667) RGD PMID:22535667 MGI:MGI:5441394 NCBI chr10:55,532,097...55,545,675
Ensembl chr10:55,532,077...55,544,429
JBrowse link
G Clic4 chloride intracellular channel 4 ISO
IEA
MGI:MGI:3838012 (MGI:MGI:3837628|PMID:19197003)
GO_REF:0000107
RGD
Ensembl
PMID:19197003 GO_REF:0000107, MGI:MGI:3837628 NCBI chr 5:153,568,937...153,625,669
Ensembl chr 5:153,568,745...153,625,869
JBrowse link
G Fzd4 frizzled class receptor 4 ISO
IBA
MGI:MGI:102570|MGI:MGI:1278315|MGI:MGI:4412057 (MGI:MGI:4366716|PMID:19837032)
PMID:21873635
(PMID:12172548), (PMID:15024691)
RGD PMID:12172548, PMID:15024691, PMID:19837032, PMID:21873635 MGI:MGI:4366716, RGD:13792537 NCBI chr 1:153,589,471...153,598,376
Ensembl chr 1:153,589,471...153,598,375
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO MGI:MGI:102570|MGI:MGI:108520|MGI:MGI:2183279|MGI:MGI:3774282 (MGI:MGI:2178168|PMID:11956231), (MGI:MGI:3790936|PMID:18263894), (MGI:MGI:4366716|PMID:19837032) RGD PMID:11956231, PMID:18263894, PMID:19837032 MGI:MGI:2178168, MGI:MGI:3790936, MGI:MGI:4366716 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Ndp norrin cystine knot growth factor NDP ISO MGI:MGI:108520|MGI:MGI:1278315 (MGI:MGI:4366716|PMID:19837032) RGD PMID:19837032 MGI:MGI:4366716 NCBI chr  X:6,791,090...6,815,586
Ensembl chr  X:6,791,136...6,815,583
Ensembl chr  X:6,791,136...6,815,583
JBrowse link
G Nrp1 neuropilin 1 ISO (MGI:MGI:5562961|PMID:24401374) RGD PMID:24401374 MGI:MGI:5562961 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Rhoj ras homolog family member J ISO MGI:MGI:4365246 (MGI:MGI:5441394|PMID:22535667) RGD PMID:22535667 MGI:MGI:5441394 NCBI chr 6:98,284,361...98,367,122
Ensembl chr 6:98,284,170...98,367,756
JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO MGI:MGI:2682641 (MGI:MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:MGI:2680888 NCBI chr15:11,832,611...11,912,923
Ensembl chr15:11,836,286...11,912,916
JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 ISO MGI:MGI:3707409 (MGI:MGI:3703109|PMID:17092954) RGD PMID:17092954 MGI:MGI:3703109 NCBI chr 2:102,685,513...102,688,624
Ensembl chr 2:102,685,513...102,688,624
JBrowse link
G Cabp4 calcium binding protein 4 ISO MGI:MGI:3056615 (MGI:MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:MGI:3609280 NCBI chr 1:219,383,452...219,388,009
Ensembl chr 1:219,383,452...219,388,009
JBrowse link
G Casz1 castor zinc finger 1 ISO (MGI:MGI:5630049|PMID:24467707) RGD PMID:24467707 MGI:MGI:5630049 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Irx5 iroquois homeobox 5 ISO MGI:MGI:1890816 (MGI:MGI:3776945|PMID:18322081) RGD PMID:18322081 MGI:MGI:3776945 NCBI chr19:16,415,813...16,421,088
Ensembl chr19:16,415,636...16,421,191
JBrowse link
G Irx6 iroquois homeobox 6 ISO MGI:MGI:5448232 (MGI:MGI:5447580|PMID:23172916) RGD PMID:23172916 MGI:MGI:5447580 NCBI chr19:15,726,633...15,733,442
Ensembl chr19:15,727,514...15,733,412
JBrowse link
G Vsx1 visual system homeobox 1 ISO MGI:MGI:1859086|MGI:MGI:3033929|MGI:MGI:3040317 (MGI:MGI:3029641|PMID:14745032), (MGI:MGI:3039332|PMID:15043821), (MGI:MGI:3776945|PMID:18322081) RGD PMID:14745032, PMID:15043821, PMID:18322081 MGI:MGI:3029641, MGI:MGI:3039332, MGI:MGI:3776945 NCBI chr 3:146,484,235...146,494,757
Ensembl chr 3:146,484,238...146,491,837
JBrowse link
G Vsx2 visual system homeobox 2 ISO MGI:MGI:1856112 (MGI:MGI:79586|PMID:8630490) RGD PMID:8630490 MGI:MGI:79586 NCBI chr 6:108,285,031...108,308,588
Ensembl chr 6:108,285,822...108,308,587
JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 ISO (MGI:MGI:6214404|PMID:30146259) RGD PMID:30146259 MGI:MGI:6214404 NCBI chr 7:97,559,653...97,707,872
Ensembl chr 7:97,559,841...97,695,739
JBrowse link
retinal blood vessel morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034833.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:53,872...54,885 JBrowse link
G AABR07071701.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:126,975,833...126,976,850 JBrowse link
G Col4a1 collagen type IV alpha 1 chain ISO (PMID:20818663) RGD PMID:20818663 NCBI chr16:83,522,162...83,632,153
Ensembl chr16:83,522,162...83,632,153
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:4431324|PMID:20032512)
Ensembl
UniProt
RGD
PMID:20032512 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4431324 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722
JBrowse link
G Fzd4 frizzled class receptor 4 ISO (MGI:MGI:3621833|PMID:15035989) RGD PMID:15035989 MGI:MGI:3621833 NCBI chr 1:153,589,471...153,598,376
Ensembl chr 1:153,589,471...153,598,375
JBrowse link
G Lama1 laminin subunit alpha 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 9:115,916,907...116,042,123
Ensembl chr 9:115,916,907...116,042,123
JBrowse link
G LOC102554748 nidogen-2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:380,313...427,615
Ensembl chr 7:380,741...381,732
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO
IBA
(PMID:15024691), (PMID:15346351)
(MGI:MGI:6092915|PMID:27031698)
PMID:21873635
RGD PMID:15024691, PMID:15346351, PMID:27031698, PMID:21873635 MGI:MGI:6092915, RGD:13792537 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
retinal cone cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:MGI:4437526 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Cabp4 calcium binding protein 4 ISO MGI:MGI:3056615 (MGI:MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:MGI:3609280 NCBI chr 1:219,383,452...219,388,009
Ensembl chr 1:219,383,452...219,388,009
JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 ISO MGI:MGI:3608770 (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 9:43,807,412...43,858,225
Ensembl chr 9:43,807,677...43,854,396
JBrowse link
G Dio3 iodothyronine deiodinase 3 ISO MGI:MGI:2664293 (MGI:MGI:4441081|PMID:20203194) RGD PMID:20203194 MGI:MGI:4441081 NCBI chr 6:134,627,278...134,629,139
Ensembl chr 6:134,627,278...134,629,138
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO MGI:MGI:3588845 (MGI:MGI:3714271|PMID:17065522), (MGI:MGI:4849309|PMID:21052544) RGD PMID:17065522, PMID:21052544 MGI:MGI:3714271, MGI:MGI:4849309 NCBI chr 2:210,880,754...210,890,765
Ensembl chr 2:210,880,777...210,889,881
JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 ISO
IEA
(MGI:MGI:4849309|PMID:21052544)
GO_REF:0000107
RGD
Ensembl
PMID:21052544 GO_REF:0000107, MGI:MGI:4849309 NCBI chr 2:50,099,576...50,499,799
Ensembl chr 2:50,099,576...50,499,799
JBrowse link
G Mir124-1 microRNA 124-1 ISO MGI:MGI:3618700|MGI:MGI:5307015|MGI:MGI:5307017 (MGI:MGI:5303045|PMID:21857657) RGD PMID:21857657 MGI:MGI:5303045 NCBI chr15:47,964,298...47,964,382
Ensembl chr15:47,964,298...47,964,382
JBrowse link
G Mir124-2 microRNA 124-2 ISO MGI:MGI:2676807 (MGI:MGI:5303045|PMID:21857657) RGD PMID:21857657 MGI:MGI:5303045 NCBI chr 2:102,311,603...102,311,711
Ensembl chr 2:102,311,603...102,311,711
JBrowse link
G Mir183 microRNA 183 ISO MGI:MGI:2676846|MGI:MGI:3619440 (MGI:MGI:5469752|PMID:23341629) RGD PMID:23341629 MGI:MGI:5469752 NCBI chr 4:57,463,569...57,463,678
Ensembl chr 4:57,463,569...57,463,678
JBrowse link
G Mir96 microRNA 96 ISO MGI:MGI:2676846|MGI:MGI:2676847 (MGI:MGI:5469752|PMID:23341629) RGD PMID:23341629 MGI:MGI:5469752 NCBI chr 4:57,463,366...57,463,471
Ensembl chr 4:57,463,366...57,463,471
JBrowse link
G Pde6c phosphodiesterase 6C ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 1:256,822,099...256,885,879
Ensembl chr 1:256,822,334...256,877,810
JBrowse link
G Rorb RAR-related orphan receptor B IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3652638|PMID:16574740)
Ensembl
UniProt
RGD
PMID:16574740 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3652638 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (MGI:MGI:2676521|PMID:14507858) RGD PMID:14507858 MGI:MGI:2676521 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Thrb thyroid hormone receptor beta IEA
ISO
GO_REF:0000107
(MGI:MGI:4441081|PMID:20203194)
Ensembl
RGD
PMID:20203194 GO_REF:0000107, MGI:MGI:4441081 NCBI chr15:8,890,578...9,239,815
Ensembl chr15:8,890,578...9,086,282
JBrowse link
G Thy1 Thy-1 cell surface antigen ISO
IBA
ISS
(MGI:MGI:1349255|PMID:10567740)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:10567740, PMID:21873635 GO_REF:0000024, MGI:MGI:1349255, RGD:13792537 NCBI chr 8:48,382,121...48,387,271
Ensembl chr 8:48,382,121...48,386,935
JBrowse link
G Ush1c USH1 protein network component harmonin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
JBrowse link
retinal pigment epithelium development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfh complement factor H ISO (MGI:MGI:5532224|PMID:23844226), (MGI:MGI:5648643|PMID:25991857) RGD PMID:23844226, PMID:25991857 MGI:MGI:5532224, MGI:MGI:5648643 NCBI chr13:56,979,155...57,080,540
Ensembl chr13:56,978,607...57,080,622
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Med1 mediator complex subunit 1 ISO (MGI:MGI:2158098|PMID:11724781) RGD PMID:11724781 MGI:MGI:2158098 NCBI chr10:86,101,560...86,145,271
Ensembl chr10:86,103,600...86,144,880
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A ISO (MGI:MGI:5789479|PMID:27008858) RGD PMID:27008858 MGI:MGI:5789479 NCBI chr 5:140,642,865...140,657,759
Ensembl chr 5:140,642,885...140,657,745
JBrowse link
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:84247|PMID:8951055)
GO_REF:0000024
RGD
UniProt
PMID:8951055 GO_REF:0000024, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Rarb retinoic acid receptor, beta ISO MGI:MGI:97858 (MGI:MGI:81656|PMID:8681798) RGD PMID:8681798 MGI:MGI:81656 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:MGI:97857 (MGI:MGI:81656|PMID:8681798) RGD PMID:8681798 MGI:MGI:81656 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 ISO MGI:MGI:4440463 (MGI:MGI:4439200|PMID:20159594) RGD PMID:20159594 MGI:MGI:4439200 NCBI chr20:37,463,879...37,701,268
Ensembl chr20:37,465,278...37,700,937
JBrowse link
retinal rod cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:MGI:4437526 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein ISO MGI:MGI:3576051 (MGI:MGI:3588454|PMID:16000322) RGD PMID:16000322 MGI:MGI:3588454 NCBI chr 4:117,371,544...117,472,310
Ensembl chr 4:117,371,659...117,472,198
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO MGI:MGI:3045473 (MGI:MGI:3044824|PMID:15173597) RGD PMID:15173597 MGI:MGI:3044824 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 ISO MGI:MGI:3054837 (MGI:MGI:3814679|PMID:17255172) RGD PMID:17255172 MGI:MGI:3814679 NCBI chr 3:176,279,997...176,282,211
Ensembl chr 3:176,279,997...176,282,211
JBrowse link
G Ccdc66 coiled-coil domain containing 66 ISO MGI:MGI:3893603 (MGI:MGI:5141557|PMID:21680557) RGD PMID:21680557 MGI:MGI:5141557 NCBI chr16:3,107,119...3,139,188
Ensembl chr16:3,110,239...3,139,177
JBrowse link
G Cfh complement factor H ISO (MGI:MGI:3760334|PMID:17921253) RGD PMID:17921253 MGI:MGI:3760334 NCBI chr13:56,979,155...57,080,540
Ensembl chr13:56,978,607...57,080,622
JBrowse link
G Miat myocardial infarction associated transcript ISO MGI:MGI:3665263 (MGI:MGI:3655931|PMID:16877424) RGD PMID:16877424 MGI:MGI:3655931 NCBI chr12:50,447,251...50,461,859 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase ISO MGI:MGI:1934018 (MGI:MGI:3769195|PMID:17712420) RGD PMID:17712420 MGI:MGI:3769195 NCBI chr10:88,979,363...88,986,879
Ensembl chr10:88,979,383...88,986,867
JBrowse link
G Nrl neural retina leucine zipper ISO
IBA
MGI:MGI:2152376 (MGI:MGI:2385798|PMID:11694879)
PMID:21873635
RGD PMID:11694879, PMID:21873635 MGI:MGI:2385798, RGD:13792537 NCBI chr15:34,197,115...34,201,408
Ensembl chr15:34,197,193...34,198,921
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO
IEA
MGI:MGI:3039928 (MGI:MGI:3039190|PMID:10516311)
GO_REF:0000107
RGD
Ensembl
PMID:10516311 GO_REF:0000107, MGI:MGI:3039190 NCBI chr17:5,934,651...6,245,778
Ensembl chr17:5,933,729...6,244,676
JBrowse link
G Rorb RAR-related orphan receptor B IEA
ISO
ISS
GO_REF:0000107
(MGI:MGI:3652638|PMID:16574740), (MGI:MGI:4366105|PMID:19805139)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:16574740, PMID:19805139 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3652638, MGI:MGI:4366105 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (MGI:MGI:2676521|PMID:14507858) RGD PMID:14507858 MGI:MGI:2676521 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rpgrip1l Rpgrip1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 ISO
IEA
MGI:MGI:4421441 (MGI:MGI:4420740|PMID:19966281)
GO_REF:0000107
RGD
Ensembl
PMID:19966281 GO_REF:0000107, MGI:MGI:4420740 NCBI chr 1:124,983,391...125,101,759
Ensembl chr 1:124,983,452...125,099,573
JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin IMP RGD PMID:16914133 RGD:9831439 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Sox8 SRY-box transcription factor 8 ISO
ISS
MGI:MGI:98371 (MGI:MGI:4368088|PMID:19490914)
GO_REF:0000024
RGD
UniProt
PMID:19490914 GO_REF:0000024, MGI:MGI:4368088 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO
ISS
MGI:MGI:98370 (MGI:MGI:4368088|PMID:19490914)
GO_REF:0000024
RGD
UniProt
PMID:19490914 GO_REF:0000024, MGI:MGI:4368088 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO MGI:MGI:3052661|MGI:MGI:4841554 (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin IEP RGD PMID:16914133 RGD:9831439 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        retina development in camera-type eye 208
          negative regulation of retina development in camera-type eye + 2
          neural retina development + 90
          positive regulation of retina development in camera-type eye + 2
          regulation of retina development in camera-type eye + 9
          retina morphogenesis in camera-type eye + 77
          retina vasculature development in camera-type eye + 28
          retinal pigment epithelium development 8
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            animal organ development 4027
              sensory organ development 693
                eye development 459
                  camera-type eye development 410
                    retina development in camera-type eye 208
                      negative regulation of retina development in camera-type eye + 2
                      neural retina development + 90
                      positive regulation of retina development in camera-type eye + 2
                      regulation of retina development in camera-type eye + 9
                      retina morphogenesis in camera-type eye + 77
                      retina vasculature development in camera-type eye + 28
                      retinal pigment epithelium development 8
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.