Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:retina morphogenesis in camera-type eye
go back to main search page
Accession:GO:0060042 term browser browse the term
Definition:The process in which the anatomical structure of the retina is generated and organized.
Synonyms:exact_synonym: retina morphogenesis in camera-style eye;   retinogenesis


show annotations for term's descendants           Sort by:
 
retina morphogenesis in camera-type eye term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 ISO MGI:MGI:3707409 (MGI:MGI:3703109|PMID:17092954) RGD PMID:17092954 MGI:MGI:3703109 NCBI chr 2:102,685,513...102,688,624
Ensembl chr 2:102,685,513...102,688,624
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:2675211|PMID:12915475), (MGI:MGI:3696487|PMID:17234588), (MGI:MGI:5608935|PMID:25147295) RGD PMID:12915475, PMID:17234588, PMID:25147295 MGI:MGI:2675211, MGI:MGI:3696487, MGI:MGI:5608935 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3848562|PMID:19389377)
Ensembl
UniProt
RGD
PMID:19389377 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3848562 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO (PMID:15346351) RGD PMID:15346351 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:2156191 (MGI:MGI:3823171|PMID:18985738) RGD PMID:18985738 MGI:MGI:3823171 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Man2a1 mannosidase, alpha, class 2A, member 1 ISO MGI:MGI:2159011|MGI:MGI:2673381 (MGI:MGI:4453938|PMID:20144606) RGD PMID:20144606 MGI:MGI:4453938 NCBI chr 9:112,293,388...112,451,677
Ensembl chr 9:112,293,388...112,451,677
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A ISO (MGI:MGI:5789479|PMID:27008858) RGD PMID:27008858 MGI:MGI:5789479 NCBI chr 5:140,642,865...140,657,759
Ensembl chr 5:140,642,885...140,657,745
JBrowse link
G Nectin3 nectin cell adhesion molecule 3 ISO MGI:MGI:3605481 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr11:57,897,879...57,995,193
Ensembl chr11:57,897,879...57,993,548
JBrowse link
G Prom1 prominin 1 ISO (PMID:18654668) RGD PMID:18654668 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO MGI:MGI:3701996 (MGI:MGI:3701413|PMID:17301087) RGD PMID:17301087 MGI:MGI:3701413 NCBI chr17:86,199,623...86,201,477
Ensembl chr17:86,199,623...86,201,477
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:MGI:4437581|PMID:20300562) RGD PMID:20300562 MGI:MGI:4437581 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO MGI:MGI:2386674 (MGI:MGI:1354839|PMID:10725384) RGD PMID:10725384 MGI:MGI:1354839 NCBI chr  X:14,271,012...14,331,745
Ensembl chr  X:14,271,017...14,331,486
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO MGI:MGI:3625176 (MGI:MGI:3624065|PMID:16651659) RGD PMID:16651659 MGI:MGI:3624065 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Vsx2 visual system homeobox 2 ISO MGI:MGI:1856112 (MGI:MGI:3701027|PMID:16854970), (MGI:MGI:79586|PMID:8630490) RGD PMID:8630490, PMID:16854970 MGI:MGI:3701027, MGI:MGI:79586 NCBI chr 6:108,285,031...108,308,588
Ensembl chr 6:108,285,822...108,308,587
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:37,004,776...37,599,866
Ensembl chr11:37,004,902...37,253,776
JBrowse link
G Prom1 prominin 1 ISO
IBA
(PMID:18654668)
PMID:21873635
(MGI:MGI:3838023|PMID:19228982)
RGD PMID:18654668, PMID:19228982, PMID:21873635 MGI:MGI:3838023, RGD:13792537 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:MGI:4437581|PMID:20300562) RGD PMID:20300562 MGI:MGI:4437581 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 ISO (MGI:MGI:5693671|PMID:26287463) RGD PMID:26287463 MGI:MGI:5693671 NCBI chr10:102,299,593...102,576,554
Ensembl chr10:102,303,028...102,576,878
JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO GO:0060219 (MGI:MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:MGI:2680888 NCBI chr15:11,832,611...11,912,923
Ensembl chr15:11,836,286...11,912,916
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 ISO MGI:MGI:5140723 (MGI:MGI:5014119|PMID:21646512) RGD PMID:21646512 MGI:MGI:5014119 NCBI chr 6:122,920,308...122,974,525
Ensembl chr 6:122,920,317...122,974,522
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated ISO
IEA
MGI:MGI:2653120 (MGI:MGI:4422144|PMID:19754878)
GO_REF:0000107
RGD
Ensembl
PMID:19754878 GO_REF:0000107, MGI:MGI:4422144 NCBI chr 8:36,625,757...36,712,091
Ensembl chr 8:36,625,733...36,710,949
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
(MGI:MGI:3772525|PMID:18094249)
GO_REF:0000024
RGD
UniProt
PMID:18094249 GO_REF:0000024, MGI:MGI:3772525 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:4415718 (MGI:MGI:4413396|PMID:19653321)
PMID:21873635
RGD PMID:19653321, PMID:21873635 MGI:MGI:4413396, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:12692551) RGD PMID:12692551 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Rbp4 retinol binding protein 4 ISO (MGI:MGI:1344892|PMID:10469643) RGD PMID:10469643 MGI:MGI:1344892 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
horizontal cell localization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 ISO (MGI:MGI:3772525|PMID:18094249) RGD PMID:18094249 MGI:MGI:3772525 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO MGI:MGI:3052661|MGI:MGI:4841554 (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc66 coiled-coil domain containing 66 ISO MGI:MGI:3893603 (MGI:MGI:5141557|PMID:21680557) RGD PMID:21680557 MGI:MGI:5141557 NCBI chr16:3,107,119...3,139,188
Ensembl chr16:3,110,239...3,139,177
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:2675211|PMID:12915475), (MGI:MGI:3051713|PMID:15316081), (MGI:MGI:3690408|PMID:16885194) RGD PMID:12915475, PMID:15316081, PMID:16885194 MGI:MGI:2675211, MGI:MGI:3051713, MGI:MGI:3690408 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Dscam DS cell adhesion molecule ISO
IEA
MGI:MGI:3761008 (MGI:MGI:3768917|PMID:18216855)
GO_REF:0000107
RGD
Ensembl
PMID:18216855 GO_REF:0000107, MGI:MGI:3768917 NCBI chr11:37,004,776...37,599,866
Ensembl chr11:37,004,902...37,253,776
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO MGI:MGI:2668595 (MGI:MGI:1334014|PMID:10097103) RGD PMID:10097103 MGI:MGI:1334014 NCBI chr16:81,153,489...81,165,442
Ensembl chr16:81,153,489...81,165,442
JBrowse link
retina layer formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO
ISS
UniProtKB:F8W3V6 (MGI:MGI:5306539|PMID:21959375)
GO_REF:0000024
RGD
UniProt
PMID:21959375 GO_REF:0000024, MGI:MGI:5306539 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Arl6 ADP-ribosylation factor like GTPase 6 ISO MGI:MGI:4442928|MGI:MGI:5310744 (MGI:MGI:4442100|PMID:20333246), (MGI:MGI:5306530|PMID:22139371) RGD PMID:20333246, PMID:22139371 MGI:MGI:4442100, MGI:MGI:5306530 NCBI chr11:42,858,476...42,884,324
Ensembl chr11:42,858,478...42,884,603
JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr15:39,955,689...40,488,737
Ensembl chr15:40,000,322...40,428,800
JBrowse link
G Calb1 calbindin 1 ISO (PMID:10741426) RGD PMID:10741426 NCBI chr 5:29,538,380...29,562,774
Ensembl chr 5:29,538,380...29,562,773
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:3696487|PMID:17234588) RGD PMID:17234588 MGI:MGI:3696487 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Dscam DS cell adhesion molecule ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:37,004,776...37,599,866
Ensembl chr11:37,004,902...37,253,776
JBrowse link
G Fat3 FAT atypical cadherin 3 ISO MGI:MGI:1341907 (MGI:MGI:5292419|PMID:21903076) RGD PMID:21903076 MGI:MGI:5292419 NCBI chr 8:14,417,039...15,011,596
Ensembl chr 8:14,417,584...14,880,644
JBrowse link
G Fjx1 four-jointed box kinase 1 ISO MGI:MGI:2444314 (MGI:MGI:5292419|PMID:21903076) RGD PMID:21903076 MGI:MGI:5292419 NCBI chr 3:92,288,818...92,290,919
Ensembl chr 3:92,288,818...92,290,919
JBrowse link
G Foxn4 forkhead box N4 ISO (MGI:MGI:3054139|PMID:15363391) RGD PMID:15363391 MGI:MGI:3054139 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Igfn1 immunoglobulin-like and fibronectin type III domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:52,791,188...52,823,037
Ensembl chr13:52,791,606...52,834,134
JBrowse link
G Irx6 iroquois homeobox 6 ISO MGI:MGI:5448232 (MGI:MGI:5447580|PMID:23172916) RGD PMID:23172916 MGI:MGI:5447580 NCBI chr19:15,726,633...15,733,442
Ensembl chr19:15,727,514...15,733,412
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:3772525|PMID:18094249), (PMID:10741426)
UniProt
RGD
PMID:10741426, PMID:18094249 GO_REF:0000024, MGI:MGI:3772525 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Megf11 multiple EGF-like-domains 11 ISO (MGI:MGI:5316136|PMID:22407321) RGD PMID:22407321 MGI:MGI:5316136 NCBI chr 8:69,859,256...70,191,070
Ensembl chr 8:69,971,778...70,184,742
JBrowse link
G Obsl1 obscurin like cytoskeletal adaptor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:82,673,871...82,699,577
Ensembl chr 9:82,680,384...82,699,551
JBrowse link
G Prom1 prominin 1 ISO (MGI:MGI:3838023|PMID:19228982) RGD PMID:19228982 MGI:MGI:3838023 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO
ISS
(MGI:MGI:3691257|PMID:17075007)
GO_REF:0000024
RGD
UniProt
PMID:17075007 GO_REF:0000024, MGI:MGI:3691257 NCBI chr17:86,199,623...86,201,477
Ensembl chr17:86,199,623...86,201,477
JBrowse link
G Ptprm protein tyrosine phosphatase, receptor type, M ISO
ISS
(PMID:14623235)
GO_REF:0000024
RGD
UniProt
PMID:14623235 GO_REF:0000024 NCBI chr 9:114,846,095...115,555,261
Ensembl chr 9:114,846,095...115,555,261
JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO MGI:MGI:5467544 (MGI:MGI:5462166|PMID:22605914) RGD PMID:22605914 MGI:MGI:5462166 NCBI chr 1:72,956,017...72,983,811
Ensembl chr 1:72,956,026...72,984,350
JBrowse link
G Rs1 retinoschisin 1 ISO MGI:MGI:2179757|MGI:MGI:3056058 (MGI:MGI:2179152|PMID:11983912), (MGI:MGI:3055638|PMID:15326152) RGD PMID:11983912, PMID:15326152 MGI:MGI:2179152, MGI:MGI:3055638 NCBI chr  X:35,749,957...35,777,243
Ensembl chr  X:35,749,957...35,777,243
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 ISO
IBA
(MGI:MGI:5693671|PMID:26287463)
PMID:21873635
RGD PMID:26287463, PMID:21873635 MGI:MGI:5693671, RGD:13792537 NCBI chr10:102,299,593...102,576,554
Ensembl chr10:102,303,028...102,576,878
JBrowse link
G Slc1a1 solute carrier family 1 member 1 ISO MGI:MGI:2655190 (MGI:MGI:4414613|PMID:19766171) RGD PMID:19766171 MGI:MGI:4414613 NCBI chr 1:246,955,017...247,035,159
Ensembl chr 1:246,954,980...247,037,056
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
IEA
(PMID:20607706)
GO_REF:0000107
RGD
Ensembl
PMID:20607706 GO_REF:0000107 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tfap2b transcription factor AP-2 beta ISO (PMID:20607706) RGD PMID:20607706 NCBI chr 9:25,410,669...25,440,568
Ensembl chr 9:25,410,669...25,440,411
JBrowse link
G Tspan12 tetraspanin 12 ISO
ISS
(MGI:MGI:4410396|PMID:19837033)
GO_REF:0000024
RGD
UniProt
PMID:19837033 GO_REF:0000024, MGI:MGI:4410396 NCBI chr 4:48,852,823...48,953,240
Ensembl chr 4:48,852,827...48,928,372
JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 ISO MGI:MGI:3707409 (MGI:MGI:3703109|PMID:17092954) RGD PMID:17092954 MGI:MGI:3703109 NCBI chr 2:102,685,513...102,688,624
Ensembl chr 2:102,685,513...102,688,624
JBrowse link
G Cabp4 calcium binding protein 4 ISO MGI:MGI:3056615 (MGI:MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:MGI:3609280 NCBI chr 1:219,383,452...219,388,009
Ensembl chr 1:219,383,452...219,388,009
JBrowse link
G Casz1 castor zinc finger 1 ISO (MGI:MGI:5630049|PMID:24467707) RGD PMID:24467707 MGI:MGI:5630049 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Irx5 iroquois homeobox 5 ISO MGI:MGI:1890816 (MGI:MGI:3776945|PMID:18322081) RGD PMID:18322081 MGI:MGI:3776945 NCBI chr19:16,415,813...16,421,088
Ensembl chr19:16,415,636...16,421,191
JBrowse link
G Irx6 iroquois homeobox 6 ISO MGI:MGI:5448232 (MGI:MGI:5447580|PMID:23172916) RGD PMID:23172916 MGI:MGI:5447580 NCBI chr19:15,726,633...15,733,442
Ensembl chr19:15,727,514...15,733,412
JBrowse link
G Vsx1 visual system homeobox 1 ISO MGI:MGI:1859086|MGI:MGI:3033929|MGI:MGI:3040317 (MGI:MGI:3029641|PMID:14745032), (MGI:MGI:3039332|PMID:15043821), (MGI:MGI:3776945|PMID:18322081) RGD PMID:14745032, PMID:15043821, PMID:18322081 MGI:MGI:3029641, MGI:MGI:3039332, MGI:MGI:3776945 NCBI chr 3:146,484,235...146,494,757
Ensembl chr 3:146,484,238...146,491,837
JBrowse link
G Vsx2 visual system homeobox 2 ISO MGI:MGI:1856112 (MGI:MGI:79586|PMID:8630490) RGD PMID:8630490 MGI:MGI:79586 NCBI chr 6:108,285,031...108,308,588
Ensembl chr 6:108,285,822...108,308,587
JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 ISO (MGI:MGI:6214404|PMID:30146259) RGD PMID:30146259 MGI:MGI:6214404 NCBI chr 7:97,559,653...97,707,872
Ensembl chr 7:97,559,841...97,695,739
JBrowse link
retinal cone cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:MGI:4437526 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Cabp4 calcium binding protein 4 ISO MGI:MGI:3056615 (MGI:MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:MGI:3609280 NCBI chr 1:219,383,452...219,388,009
Ensembl chr 1:219,383,452...219,388,009
JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 ISO MGI:MGI:3608770 (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 9:43,807,412...43,858,225
Ensembl chr 9:43,807,677...43,854,396
JBrowse link
G Dio3 iodothyronine deiodinase 3 ISO MGI:MGI:2664293 (MGI:MGI:4441081|PMID:20203194) RGD PMID:20203194 MGI:MGI:4441081 NCBI chr 6:134,627,278...134,629,139
Ensembl chr 6:134,627,278...134,629,138
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO MGI:MGI:3588845 (MGI:MGI:3714271|PMID:17065522), (MGI:MGI:4849309|PMID:21052544) RGD PMID:17065522, PMID:21052544 MGI:MGI:3714271, MGI:MGI:4849309 NCBI chr 2:210,880,754...210,890,765
Ensembl chr 2:210,880,777...210,889,881
JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 ISO
IEA
(MGI:MGI:4849309|PMID:21052544)
GO_REF:0000107
RGD
Ensembl
PMID:21052544 GO_REF:0000107, MGI:MGI:4849309 NCBI chr 2:50,099,576...50,499,799
Ensembl chr 2:50,099,576...50,499,799
JBrowse link
G Mir124-1 microRNA 124-1 ISO MGI:MGI:3618700|MGI:MGI:5307015|MGI:MGI:5307017 (MGI:MGI:5303045|PMID:21857657) RGD PMID:21857657 MGI:MGI:5303045 NCBI chr15:47,964,298...47,964,382
Ensembl chr15:47,964,298...47,964,382
JBrowse link
G Mir124-2 microRNA 124-2 ISO MGI:MGI:2676807 (MGI:MGI:5303045|PMID:21857657) RGD PMID:21857657 MGI:MGI:5303045 NCBI chr 2:102,311,603...102,311,711
Ensembl chr 2:102,311,603...102,311,711
JBrowse link
G Mir183 microRNA 183 ISO MGI:MGI:2676846|MGI:MGI:3619440 (MGI:MGI:5469752|PMID:23341629) RGD PMID:23341629 MGI:MGI:5469752 NCBI chr 4:57,463,569...57,463,678
Ensembl chr 4:57,463,569...57,463,678
JBrowse link
G Mir96 microRNA 96 ISO MGI:MGI:2676846|MGI:MGI:2676847 (MGI:MGI:5469752|PMID:23341629) RGD PMID:23341629 MGI:MGI:5469752 NCBI chr 4:57,463,366...57,463,471
Ensembl chr 4:57,463,366...57,463,471
JBrowse link
G Pde6c phosphodiesterase 6C ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 1:256,822,099...256,885,879
Ensembl chr 1:256,822,334...256,877,810
JBrowse link
G Rorb RAR-related orphan receptor B IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3652638|PMID:16574740)
Ensembl
UniProt
RGD
PMID:16574740 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3652638 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (MGI:MGI:2676521|PMID:14507858) RGD PMID:14507858 MGI:MGI:2676521 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Thrb thyroid hormone receptor beta IEA
ISO
GO_REF:0000107
(MGI:MGI:4441081|PMID:20203194)
Ensembl
RGD
PMID:20203194 GO_REF:0000107, MGI:MGI:4441081 NCBI chr15:8,890,578...9,239,815
Ensembl chr15:8,890,578...9,086,282
JBrowse link
G Thy1 Thy-1 cell surface antigen ISO
IBA
ISS
(MGI:MGI:1349255|PMID:10567740)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:10567740, PMID:21873635 GO_REF:0000024, MGI:MGI:1349255, RGD:13792537 NCBI chr 8:48,382,121...48,387,271
Ensembl chr 8:48,382,121...48,386,935
JBrowse link
G Ush1c USH1 protein network component harmonin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
JBrowse link
retinal rod cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:MGI:4437526 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein ISO MGI:MGI:3576051 (MGI:MGI:3588454|PMID:16000322) RGD PMID:16000322 MGI:MGI:3588454 NCBI chr 4:117,371,544...117,472,310
Ensembl chr 4:117,371,659...117,472,198
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO MGI:MGI:3045473 (MGI:MGI:3044824|PMID:15173597) RGD PMID:15173597 MGI:MGI:3044824 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 ISO MGI:MGI:3054837 (MGI:MGI:3814679|PMID:17255172) RGD PMID:17255172 MGI:MGI:3814679 NCBI chr 3:176,279,997...176,282,211
Ensembl chr 3:176,279,997...176,282,211
JBrowse link
G Ccdc66 coiled-coil domain containing 66 ISO MGI:MGI:3893603 (MGI:MGI:5141557|PMID:21680557) RGD PMID:21680557 MGI:MGI:5141557 NCBI chr16:3,107,119...3,139,188
Ensembl chr16:3,110,239...3,139,177
JBrowse link
G Cfh complement factor H ISO (MGI:MGI:3760334|PMID:17921253) RGD PMID:17921253 MGI:MGI:3760334 NCBI chr13:56,979,155...57,080,540
Ensembl chr13:56,978,607...57,080,622
JBrowse link
G Miat myocardial infarction associated transcript ISO MGI:MGI:3665263 (MGI:MGI:3655931|PMID:16877424) RGD PMID:16877424 MGI:MGI:3655931 NCBI chr12:50,447,251...50,461,859 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase ISO MGI:MGI:1934018 (MGI:MGI:3769195|PMID:17712420) RGD PMID:17712420 MGI:MGI:3769195 NCBI chr10:88,979,363...88,986,879
Ensembl chr10:88,979,383...88,986,867
JBrowse link
G Nrl neural retina leucine zipper ISO
IBA
MGI:MGI:2152376 (MGI:MGI:2385798|PMID:11694879)
PMID:21873635
RGD PMID:11694879, PMID:21873635 MGI:MGI:2385798, RGD:13792537 NCBI chr15:34,197,115...34,201,408
Ensembl chr15:34,197,193...34,198,921
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO
IEA
MGI:MGI:3039928 (MGI:MGI:3039190|PMID:10516311)
GO_REF:0000107
RGD
Ensembl
PMID:10516311 GO_REF:0000107, MGI:MGI:3039190 NCBI chr17:5,934,651...6,245,778
Ensembl chr17:5,933,729...6,244,676
JBrowse link
G Rorb RAR-related orphan receptor B IEA
ISO
ISS
GO_REF:0000107
(MGI:MGI:3652638|PMID:16574740), (MGI:MGI:4366105|PMID:19805139)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:16574740, PMID:19805139 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3652638, MGI:MGI:4366105 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (MGI:MGI:2676521|PMID:14507858) RGD PMID:14507858 MGI:MGI:2676521 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rpgrip1l Rpgrip1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 ISO
IEA
MGI:MGI:4421441 (MGI:MGI:4420740|PMID:19966281)
GO_REF:0000107
RGD
Ensembl
PMID:19966281 GO_REF:0000107, MGI:MGI:4420740 NCBI chr 1:124,983,391...125,101,759
Ensembl chr 1:124,983,452...125,099,573
JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin IMP RGD PMID:16914133 RGD:9831439 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Sox8 SRY-box transcription factor 8 ISO
ISS
MGI:MGI:98371 (MGI:MGI:4368088|PMID:19490914)
GO_REF:0000024
RGD
UniProt
PMID:19490914 GO_REF:0000024, MGI:MGI:4368088 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO
ISS
MGI:MGI:98370 (MGI:MGI:4368088|PMID:19490914)
GO_REF:0000024
RGD
UniProt
PMID:19490914 GO_REF:0000024, MGI:MGI:4368088 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO MGI:MGI:3052661|MGI:MGI:4841554 (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin IEP RGD PMID:16914133 RGD:9831439 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure morphogenesis 2877
        retina morphogenesis in camera-type eye 79
          camera-type eye photoreceptor cell differentiation + 38
          embryonic retina morphogenesis in camera-type eye 7
          post-embryonic retina morphogenesis in camera-type eye 4
          retina layer formation + 26
          retinal bipolar neuron differentiation + 10
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            sensory system development 470
              visual system development 465
                eye development 462
                  camera-type eye development 413
                    camera-type eye morphogenesis 149
                      retina morphogenesis in camera-type eye 79
                        camera-type eye photoreceptor cell differentiation + 38
                        embryonic retina morphogenesis in camera-type eye 7
                        post-embryonic retina morphogenesis in camera-type eye 4
                        retina layer formation + 26
                        retinal bipolar neuron differentiation + 10
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.