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ONTOLOGY REPORT - ANNOTATIONS


Term:angiogenesis involved in wound healing
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Accession:GO:0060055 term browser browse the term
Definition:Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to a damaged tissue, following an injury.


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angiogenesis involved in wound healing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt1 beta-1,4-galactosyltransferase 1 IEA
ISO
GO_REF:0000107
MGI:2450889 (MGI:3038538|PMID:15039218)
Ensembl
RGD
PMID:15039218 GO_REF:0000107, MGI:3038538 NCBI chr 5:57,121,768...57,168,610
Ensembl chr 5:57,121,769...57,168,610
JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 IEA
ISO
GO_REF:0000107
MGI:3608773 (MGI:3772530|PMID:18097059)
Ensembl
RGD
PMID:18097059 GO_REF:0000107, MGI:3772530 NCBI chr19:10,644,267...10,654,861
Ensembl chr19:10,644,244...10,653,800
JBrowse link
G Dag1 dystroglycan 1 IEP RGD PMID:21192954 RGD:11541061 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor IEP RGD PMID:9600079 RGD:2313680 NCBI chr 8:33,756,634...33,879,625
Ensembl chr 8:33,816,386...33,879,625
JBrowse link
G Gpr4 G protein-coupled receptor 4 ISO (MGI:3699048|PMID:17145776) RGD PMID:17145776 MGI:3699048 NCBI chr 1:80,125,639...80,136,786
Ensembl chr 1:80,135,391...80,136,880
JBrowse link
G Gpx1 glutathione peroxidase 1 IEA
ISO
GO_REF:0000107
MGI:2158814 (MGI:3698597|PMID:16373599)
Ensembl
RGD
PMID:16373599 GO_REF:0000107, MGI:3698597 NCBI chr 8:117,117,430...117,118,528
Ensembl chr 8:117,117,430...117,118,522
JBrowse link
G Hpse heparanase IBA
ISO
PMID:21873635
(MGI:3574236|PMID:15793281)
RGD PMID:15793281, PMID:21873635 MGI:3574236, RGD:13792537 NCBI chr14:10,534,358...10,576,686
Ensembl chr14:10,534,423...10,575,224
JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta IEA
ISO
GO_REF:0000107
MGI:3795849 (MGI:5604041|PMID:25139353)
Ensembl
RGD
PMID:25139353 GO_REF:0000107, MGI:5604041 NCBI chr 8:107,275,849...107,381,088
Ensembl chr 8:107,275,725...107,380,933
JBrowse link
G Prcp prolylcarboxypeptidase IBA
ISO
PMID:21873635
MGI:4123993 (MGI:5515692|PMID:23744584)
RGD PMID:23744584, PMID:21873635 MGI:5515692, RGD:13792537 NCBI chr 1:157,701,089...157,750,177
Ensembl chr 1:157,701,089...157,750,169
JBrowse link
G Stard13 StAR-related lipid transfer domain containing 13 NOT ISO MGI:4363733 (MGI:4887522|PMID:20208559) RGD PMID:20208559 MGI:4887522 NCBI chr12:1,023,494...1,418,919
Ensembl chr12:1,023,531...1,195,591
JBrowse link
negative regulation of vascular wound healing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox5 arachidonate 5-lipoxygenase ISS
ISO
IEA
GO_REF:0000024
(MGI:5562469|PMID:24226420)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24226420 GO_REF:0000024, GO_REF:0000107, MGI:5562469 NCBI chr 4:148,398,004...148,446,308
Ensembl chr 4:148,398,892...148,446,303
JBrowse link
G Serpine1 serpin family E member 1 ISO
IEA
UniProtKB:P22777 (PMID:9386191)
(MGI:1100384|PMID:9386191)
GO_REF:0000107
RGD
Ensembl
PMID:9386191 GO_REF:0000107, MGI:1100384 NCBI chr12:22,641,104...22,651,482
Ensembl chr12:22,641,104...22,651,482
JBrowse link
G Slc12a2 solute carrier family 12 member 2 ISO (MGI:6392927|PMID:28577991) RGD PMID:28577991 MGI:6392927 NCBI chr18:52,917,124...52,985,281
Ensembl chr18:52,917,124...52,985,261
JBrowse link
G Tafa5 TAFA chemokine like family member 5 ISO (MGI:6380922|PMID:29453251) RGD PMID:29453251 MGI:6380922 NCBI chr 7:128,500,009...128,728,834
Ensembl chr 7:128,500,011...128,728,928
JBrowse link
G Tnf tumor necrosis factor ISO (PMID:22499991) RGD PMID:22499991 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
positive regulation of vascular wound healing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxcr4 C-X-C motif chemokine receptor 4 IMP RGD PMID:24955809 RGD:11352686 NCBI chr13:45,314,952...45,318,856
Ensembl chr13:45,314,933...45,318,878
JBrowse link
G Foxc2 forkhead box C2 ISO (MGI:3813419|PMID:18579532) RGD PMID:18579532 MGI:3813419 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Smoc2 SPARC related modular calcium binding 2 ISO (PMID:16774925) RGD PMID:16774925 NCBI chr 1:56,242,289...56,374,106
Ensembl chr 1:56,242,346...56,374,120
JBrowse link
G Vegfb vascular endothelial growth factor B ISO (PMID:16109918) RGD PMID:16109918 NCBI chr 1:222,237,000...222,242,786
Ensembl chr 1:222,239,022...222,242,644
JBrowse link
G Xbp1 X-box binding protein 1 ISO (PMID:25656649) RGD PMID:25656649 NCBI chr14:85,753,736...85,758,820
Ensembl chr14:85,753,760...85,758,145
JBrowse link
vascular wound healing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipor2 adiponectin receptor 2 ISO (MGI:5607379|PMID:24742672) RGD PMID:24742672 MGI:5607379 NCBI chr 4:151,412,135...151,480,108
Ensembl chr 4:151,414,684...151,428,894
JBrowse link
G Cd34 CD34 molecule ISO (PMID:20354148) RGD PMID:20354148 NCBI chr13:113,691,842...113,711,259
Ensembl chr13:113,691,932...113,711,647
JBrowse link
G Gata2 GATA binding protein 2 ISO (PMID:22499991) RGD PMID:22499991 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Hpse heparanase IEA
ISO
GO_REF:0000107
(MGI:3574236|PMID:15793281)
Ensembl
RGD
PMID:15793281 GO_REF:0000107, MGI:3574236 NCBI chr14:10,534,358...10,576,686
Ensembl chr14:10,534,423...10,575,224
JBrowse link
G Kdr kinase insert domain receptor ISO
IEA
(PMID:22499991), (PMID:23688497)
GO_REF:0000107
RGD
Ensembl
PMID:22499991, PMID:23688497 GO_REF:0000107 NCBI chr14:34,727,677...34,787,127
Ensembl chr14:34,727,623...34,787,183
JBrowse link
G Mcam melanoma cell adhesion molecule ISO (PMID:20354148) RGD PMID:20354148 NCBI chr 8:48,472,824...48,481,005
Ensembl chr 8:48,472,824...48,481,001
JBrowse link
G Ndnf neuron-derived neurotrophic factor ISO (MGI:5607385|PMID:24706764) RGD PMID:24706764 MGI:5607385 NCBI chr 4:96,528,830...96,565,780 JBrowse link
G Vegfa vascular endothelial growth factor A ISO (PMID:23688497) RGD PMID:23688497 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure formation involved in morphogenesis 1214
        angiogenesis 527
          angiogenesis involved in wound healing 27
            vascular wound healing + 18
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          system development 5279
            circulatory system development 1225
              vasculature development 773
                blood vessel development 736
                  blood vessel morphogenesis 636
                    angiogenesis 527
                      angiogenesis involved in wound healing 27
                        vascular wound healing + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.