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ONTOLOGY REPORT - ANNOTATIONS


Term:auditory receptor cell stereocilium organization
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Accession:GO:0060088 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells.
Synonyms:exact_synonym: auditory receptor cell stereocilium organisation
 related_synonym: auditory receptor cell stereocilium organization and biogenesis


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auditory receptor cell stereocilium organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 IMP (MGI:3709803|PMID:11875276) MGI PMID:11875276 MGI:3709803 NCBI chr 6:113,743,831...114,042,613
Ensembl chr 6:113,743,831...114,042,613
JBrowse link
G Cdh23 cadherin 23 (otocadherin) IGI
IMP
(MGI:3526751|PMID:15537665)
(MGI:75953|PMID:7610888), (MGI:81497|PMID:8790740), (MGI:86134|PMID:9039475)
(MGI:3625226|PMID:12121736)
(MGI:1929001|PMID:11138008), (MGI:3686545|PMID:17050716), (MGI:5468200|PMID:23217710)
(MGI:1933915|PMID:11322776)
MGI PMID:7610888, PMID:8790740, PMID:9039475, PMID:11138008, PMID:11322776, PMID:12121736, PMID:15537665, PMID:17050716, PMID:23217710 MGI:1929001, MGI:1933915, MGI:3526751, MGI:3625226, MGI:3686545, MGI:5468200, MGI:75953, MGI:81497, MGI:86134 NCBI chr10:60,302,748...60,696,513
Ensembl chr10:60,302,748...60,696,490
JBrowse link
G Clic5 chloride intracellular channel 5 IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3663248|PMID:17021174)
GO_Central
MGI
PMID:17021174, PMID:21873635 MGI:3663248, MGI:6201960 NCBI chr17:44,134,762...44,280,169
Ensembl chr17:44,188,584...44,280,172
Ensembl chr17:44,188,584...44,280,172
JBrowse link
G Clrn1 clarin 1 IMP (MGI:3849925|PMID:19414487), (MGI:4353469|PMID:19423712) MGI PMID:19414487, PMID:19423712 MGI:3849925, MGI:4353469 NCBI chr 3:58,844,028...58,885,212
Ensembl chr 3:58,844,028...58,885,340
JBrowse link
G Grxcr2 glutaredoxin, cysteine rich 2 IGI
IMP
(MGI:6278501|PMID:30380417) MGI PMID:30380417 MGI:6278501 NCBI chr18:41,985,323...41,999,049
Ensembl chr18:41,985,323...41,999,049
JBrowse link
G Lhfpl5 lipoma HMGIC fusion partner-like 5 IMP (MGI:3578102|PMID:15905332)
(MGI:3759710|PMID:17876667), (MGI:5468200|PMID:23217710)
MGI PMID:15905332, PMID:17876667, PMID:23217710 MGI:3578102, MGI:3759710, MGI:5468200 NCBI chr17:28,575,369...28,583,593
Ensembl chr17:28,575,641...28,585,679
JBrowse link
G Myo3a myosin IIIA IGI
IMP
(MGI:5766107|PMID:26754646) MGI PMID:26754646 MGI:5766107 NCBI chr 2:22,227,503...22,618,252
Ensembl chr 2:22,227,503...22,618,252
JBrowse link
G Myo3b myosin IIIB IGI
IMP
(MGI:5766107|PMID:26754646) MGI PMID:26754646 MGI:5766107 NCBI chr 2:70,039,126...70,429,195
Ensembl chr 2:70,039,126...70,429,198
JBrowse link
G Myo7a myosin VIIA IMP (MGI:3625226|PMID:12121736)
(MGI:3686545|PMID:17050716)
(MGI:2156358|PMID:11753415)
MGI PMID:11753415, PMID:12121736, PMID:17050716 MGI:2156358, MGI:3625226, MGI:3686545 NCBI chr 7:98,051,054...98,119,522
Ensembl chr 7:98,051,060...98,119,524
JBrowse link
G Pcdh15 protocadherin 15 IGI
IMP
(MGI:3526751|PMID:15537665)
(MGI:3619110|PMID:11124469)
(MGI:3654702|PMID:16887306)
(MGI:5468200|PMID:23217710)
(MGI:1928787|PMID:10978835)
MGI PMID:10978835, PMID:11124469, PMID:15537665, PMID:16887306, PMID:23217710 MGI:1928787, MGI:3526751, MGI:3619110, MGI:3654702, MGI:5468200 NCBI chr10:73,096,277...74,649,831
Ensembl chr10:73,099,342...74,649,737
JBrowse link
G Pdzd7 PDZ domain containing 7 IMP
IBA
(MGI:5565635|PMID:24334608)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635, PMID:24334608 MGI:5565635, MGI:6201960 NCBI chr19:45,026,907...45,058,633
Ensembl chr19:45,026,906...45,045,717
JBrowse link
G Pls1 plastin 1 (I-isoform) IMP (MGI:5608770|PMID:25124451) UniProt PMID:25124451 MGI:5608770 NCBI chr 9:95,752,642...95,845,306
Ensembl chr 9:95,752,642...95,845,311
JBrowse link
G Rest RE1-silencing transcription factor IMP (MGI:6193260|PMID:29961578) UniProt PMID:29961578 MGI:6193260 NCBI chr 5:77,265,494...77,286,432
Ensembl chr 5:77,265,491...77,286,432
JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 IMP (MGI:5789047|PMID:27269051) UniProt PMID:27269051 MGI:5789047 NCBI chr13:24,501,524...24,733,806
Ensembl chr13:24,501,525...24,733,816
JBrowse link
G Scrib scribbled planar cell polarity IGI (MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chr15:76,047,162...76,069,784
Ensembl chr15:76,047,158...76,069,784
JBrowse link
G Sec24b Sec24 related gene family, member B (S. cerevisiae) IGI
IMP
(MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chr 3:129,982,759...130,061,599
Ensembl chr 3:129,982,759...130,061,553
JBrowse link
G Slc9a3r1 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 IMP (MGI:5578076|PMID:24920589) MGI PMID:24920589 MGI:5578076 NCBI chr11:115,163,341...115,181,178
Ensembl chr11:115,163,341...115,181,181
JBrowse link
G Sod1 superoxide dismutase 1, soluble IMP (MGI:1344578|PMID:10466888), (MGI:3700629|PMID:10464373) MGI PMID:10464373, PMID:10466888 MGI:1344578, MGI:3700629 NCBI chr16:90,220,762...90,226,333
Ensembl chr16:90,220,754...90,226,329
JBrowse link
G Strc stereocilin IMP (MGI:3818235|PMID:18849963)
(MGI:5430850|PMID:21165971)
MGI
UniProt
PMID:18849963, PMID:21165971 MGI:3818235, MGI:5430850 NCBI chr 2:121,363,248...121,381,370
Ensembl chr 2:121,363,728...121,387,168
JBrowse link
G Tprn taperin IGI (MGI:6278501|PMID:30380417) MGI PMID:30380417 MGI:6278501 NCBI chr 2:25,262,598...25,269,886
Ensembl chr 2:25,262,618...25,269,885
JBrowse link
G Triobp TRIO and F-actin binding protein IMP (MGI:4881391|PMID:20510926) MGI PMID:20510926 MGI:4881391 NCBI chr15:78,947,724...79,005,869
Ensembl chr15:78,947,724...79,005,869
JBrowse link
G Whrn whirlin IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:5796227|PMID:27117407)
GO_Central
MGI
PMID:21873635, PMID:27117407 MGI:5796227, MGI:6201960 NCBI chr 4:63,414,908...63,496,083
Ensembl chr 4:63,414,910...63,495,991
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23387
    developmental process 7031
      anatomical structure morphogenesis 2901
        embryonic morphogenesis 679
          auditory receptor cell morphogenesis 26
            auditory receptor cell stereocilium organization 22
Path 2
Term Annotations click to browse term
  biological_process 23387
    developmental process 7031
      anatomical structure development 6505
        multicellular organism development 5969
          system development 5380
            nervous system development 2722
              neurogenesis 1939
                generation of neurons 1785
                  neuron differentiation 1618
                    mechanoreceptor differentiation 91
                      inner ear receptor cell differentiation 84
                        inner ear auditory receptor cell differentiation 54
                          auditory receptor cell development 32
                            auditory receptor cell morphogenesis 26
                              auditory receptor cell stereocilium organization 22
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.