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ONTOLOGY REPORT - ANNOTATIONS


Term:limb bud formation
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Accession:GO:0060174 term browser browse the term
Definition:The process pertaining to the initial formation of a limb bud from unspecified parts. This process begins with the formation of a local condensation of mesenchyme cells within the prospective limb field, and ends when a limb bud is recognizable.
Synonyms:exact_synonym: limb formation;   limbbud formation


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limb bud formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain IEA
ISO
GO_REF:0000107
(PMID:20940257)
Ensembl
RGD
PMID:20940257 GO_REF:0000107 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:1927833 (MGI:1309706|PMID:9784490) RGD PMID:9784490 MGI:1309706 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153790|MGI:2153799 (MGI:1197797|PMID:9435295), (MGI:1346744|PMID:10518547) RGD PMID:9435295, PMID:10518547 MGI:1197797, MGI:1346744 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Plxna2 plexin A2 ISO (PMID:19666519) RGD PMID:19666519 NCBI chr13:113,373,569...113,570,774
Ensembl chr13:113,373,578...113,571,648
JBrowse link
G Sema3c semaphorin 3C ISO (PMID:19666519) RGD PMID:19666519 NCBI chr 4:14,318,276...14,490,438
Ensembl chr 4:14,318,274...14,490,446
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:1857796 (MGI:1928592|PMID:11118883)
Ensembl
RGD
PMID:11118883 GO_REF:0000107, MGI:1928592 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sox11 SRY-box transcription factor 11 ISS
ISO
GO_REF:0000024
(MGI:5285157|PMID:20596238)
UniProt
RGD
PMID:20596238 GO_REF:0000024, MGI:5285157 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Sox4 SRY-box transcription factor 4 ISO (MGI:5285157|PMID:20596238) RGD PMID:20596238 MGI:5285157 NCBI chr17:37,615,022...37,619,728 JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (PMID:20940257) RGD PMID:20940257 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Wnt3 Wnt family member 3 ISO
IEA
(PMID:14872406)
GO_REF:0000107
RGD
Ensembl
PMID:14872406 GO_REF:0000107 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793
JBrowse link
G Zfp219 zinc finger protein 219 ISO (PMID:20940257) RGD PMID:20940257 NCBI chr15:28,402,412...28,417,379
Ensembl chr15:28,402,415...28,406,046
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure formation involved in morphogenesis 1214
        limb bud formation 11
          mesenchyme migration involved in limb bud formation + 0
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          appendage development 204
            limb development 204
              limb morphogenesis 175
                limb bud formation 11
                  mesenchyme migration involved in limb bud formation + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.