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ONTOLOGY REPORT - ANNOTATIONS


Term:cytoplasmic vesicle lumen
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Accession:GO:0060205 term browser browse the term
Definition:The volume enclosed by a cytoplasmic vesicle.
Synonyms:related_synonym: cytoplasmic membrane-bounded vesicle lumen;   cytoplasmic membrane-enclosed vesicle lumen


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cytoplasmic vesicle lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ada adenosine deaminase JBrowse link 3 160,115,840 160,139,947 RGD:1600115
G Faslg Fas ligand JBrowse link 13 79,696,811 79,717,581 RGD:1600115
G Lcn2 lipocalin 2 JBrowse link 3 11,414,189 11,417,534 RGD:1600115
G Serpini1 serpin family I member 1 JBrowse link 2 174,013,058 174,111,693 RGD:1624291
RGD:1600115
G Zg16 zymogen granule protein 16 JBrowse link 1 198,483,800 198,486,157 RGD:1600115
acrosomal lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Spata31a5 SPATA31 subfamily A member 5 JBrowse link 17 2,417,700 2,423,486 RGD:1600115
G Zp3r zona pellucida 3 receptor JBrowse link 13 47,286,375 47,331,213 RGD:1600115
azurophil granule lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prss57 serine protease 57 JBrowse link 7 12,798,310 12,804,668 RGD:1624291
RGD:1600115
G Prtn3 proteinase 3 JBrowse link 7 12,643,712 12,646,951 RGD:1624291
chromaffin granule lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dbh dopamine beta-hydroxylase JBrowse link 3 5,709,236 5,731,895 RGD:1600115
neuronal dense core vesicle lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdyn prodynorphin JBrowse link 3 122,194,327 122,206,671 RGD:13702229
G Penk proenkephalin JBrowse link 5 17,056,412 17,061,762 RGD:13702175
G Vps13a vacuolar protein sorting 13 homolog A JBrowse link 1 235,352,513 235,813,597 RGD:1624291
secretory granule lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dbh dopamine beta-hydroxylase JBrowse link 3 5,709,236 5,731,895 RGD:1600115
RGD:1624291
G Grp gastrin releasing peptide JBrowse link 18 61,563,458 61,576,818 RGD:1600115
G Pcsk1 proprotein convertase subtilisin/kexin type 1 JBrowse link 2 91,450,162 91,497,091 RGD:1600115
G Pcsk2 proprotein convertase subtilisin/kexin type 2 JBrowse link 3 137,618,891 137,923,385 RGD:1600115
G Serpini1 serpin family I member 1 JBrowse link 2 174,013,058 174,111,693 RGD:1624291
synaptic vesicle lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Penk proenkephalin JBrowse link 5 17,056,412 17,061,762 RGD:13702175

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20119
    intracellular 14089
      cytoplasm 10968
        cytoplasmic vesicle 1861
          cytoplasmic vesicle lumen 16
            COPI-coated vesicle lumen 0
            COPII-coated vesicle lumen 0
            Golgi-associated vesicle lumen 0
            aleurone grain lumen 0
            clathrin-sculpted acetylcholine transport vesicle lumen 0
            clathrin-sculpted gamma-aminobutyric acid transport vesicle lumen 0
            clathrin-sculpted glutamate transport vesicle lumen 0
            clathrin-sculpted monoamine transport vesicle lumen 0
            cytolytic granule lumen 0
            esterosome lumen 0
            melanosome lumen 0
            phagolysosome vesicle lumen 0
            plasma membrane-derived thylakoid lumen 0
            secretory granule lumen + 12
            spine apparatus lumen 0
            synaptic vesicle lumen 1
            transport vesicle lumen + 0
Path 2
Term Annotations click to browse term
  cellular_component 20119
    cellular anatomical entity 19775
      organelle 12829
        membrane-bounded organelle 11125
          vesicle 2025
            intracellular vesicle 1867
              cytoplasmic vesicle 1861
                cytoplasmic vesicle lumen 16
                  COPI-coated vesicle lumen 0
                  COPII-coated vesicle lumen 0
                  Golgi-associated vesicle lumen 0
                  aleurone grain lumen 0
                  clathrin-sculpted acetylcholine transport vesicle lumen 0
                  clathrin-sculpted gamma-aminobutyric acid transport vesicle lumen 0
                  clathrin-sculpted glutamate transport vesicle lumen 0
                  clathrin-sculpted monoamine transport vesicle lumen 0
                  cytolytic granule lumen 0
                  esterosome lumen 0
                  melanosome lumen 0
                  phagolysosome vesicle lumen 0
                  plasma membrane-derived thylakoid lumen 0
                  secretory granule lumen + 12
                  spine apparatus lumen 0
                  synaptic vesicle lumen 1
                  transport vesicle lumen + 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.