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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of transcription initiation from RNA polymerase II promoter
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Accession:GO:0060260 term browser browse the term
Definition:Any process that modulates the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.


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negative regulation of RNA polymerase II transcriptional preinitiation complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:1624291
G Thra thyroid hormone receptor alpha JBrowse link 10 86,657,285 86,684,935 RGD:1600115
RGD:1624291
negative regulation of transcription initiation from RNA polymerase II promoter term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctnnbip1 catenin, beta-interacting protein 1 JBrowse link 5 166,464,170 166,513,030 RGD:1624291
RGD:1600115
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 JBrowse link 1 29,191,170 29,201,257 RGD:1624291
RGD:1600115
G Zfp451 zinc finger protein 451 JBrowse link 9 38,395,464 38,451,585 RGD:1624291
RGD:1600115
positive regulation of RNA polymerase II transcriptional preinitiation complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:1624291
G Cand1 cullin-associated and neddylation-dissociated 1 JBrowse link 7 62,124,362 62,162,451 RGD:8553447
G Creb1 cAMP responsive element binding protein 1 JBrowse link 9 71,229,753 71,298,994 RGD:1625706
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:1600115
RGD:1624291
G Gtf2f2 general transcription factor IIF subunit 2 JBrowse link 15 57,942,057 58,068,892 RGD:9681417
G Ikzf1 IKAROS family zinc finger 1 JBrowse link 14 91,782,281 91,867,828 RGD:1624291
G Psmc2 proteasome 26S subunit, ATPase 2 JBrowse link 4 9,867,132 9,881,383 RGD:13792537
G Psmc3 proteasome 26S subunit, ATPase 3 JBrowse link 3 79,876,938 79,882,319 RGD:13792537
G Psmc4 proteasome 26S subunit, ATPase 4 JBrowse link 1 84,978,220 84,986,536 RGD:13792537
G Psmc5 proteasome 26S subunit, ATPase 5 JBrowse link 10 94,445,877 94,451,811 RGD:13792537
G Psmc6 proteasome 26S subunit, ATPase 6 JBrowse link 15 19,667,453 19,688,916 RGD:13792537
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
RGD:1600115
G Wnt10b Wnt family member 10B JBrowse link 7 140,448,284 140,466,159 RGD:1624291
RGD:1600115
positive regulation of transcription initiation from RNA polymerase II promoter term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx36 DEAH-box helicase 36 JBrowse link 2 152,785,844 152,824,549 RGD:1600115
RGD:1624291
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link 1 80,256,973 80,268,198 RGD:1624291
RGD:1600115
G Ercc6 ERCC excision repair 6, chromatin remodeling factor JBrowse link 16 8,734,028 8,804,610 RGD:1624291
RGD:1600115
G Gtf2b general transcription factor IIB JBrowse link 2 248,709,433 248,727,741 RGD:1600115
RGD:1624291
G Hnf1a HNF1 homeobox A JBrowse link 12 47,407,811 47,433,342 RGD:1624291
G Hnf1b HNF1 homeobox B JBrowse link 10 71,159,863 71,218,902 RGD:1624291
RGD:1600115
G Irf8 interferon regulatory factor 8 JBrowse link 19 54,314,859 54,336,643 RGD:1624291
G Nkx2-5 NK2 homeobox 5 JBrowse link 10 16,635,989 16,638,758 RGD:1624291
RGD:1600115
G Paxip1 PAX interacting protein 1 JBrowse link 4 3,956,931 4,008,326 RGD:1624291
RGD:1600115
G Srf serum response factor JBrowse link 9 16,737,637 16,747,226 RGD:1624291
RGD:1600115
G Sub1 SUB1 regulator of transcription JBrowse link 2 62,019,902 62,034,704 RGD:13792537
G Taf6 TATA-box binding protein associated factor 6 JBrowse link 12 19,320,269 19,328,706 RGD:1624291
G Xpa XPA, DNA damage recognition and repair factor JBrowse link 5 61,749,767 61,793,641 RGD:1624291
regulation of RNA polymerase II transcriptional preinitiation complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atf7ip activating transcription factor 7 interacting protein JBrowse link 4 170,476,998 170,563,063 RGD:1624291
RGD:1600115
G Dr1 down-regulator of transcription 1 JBrowse link 14 2,463,651 2,475,004 RGD:13792537
G LOC100910207 protein Dr1-like JBrowse link 14 1,621,021 1,632,432 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19245
    metabolic process 11438
      regulation of metabolic process 6410
        regulation of macromolecule metabolic process 5912
          regulation of gene expression 4132
            regulation of transcription, DNA-templated 3104
              regulation of transcription by RNA polymerase II 2076
                regulation of transcription initiation from RNA polymerase II promoter 34
                  negative regulation of transcription initiation from RNA polymerase II promoter + 5
                  positive regulation of transcription initiation from RNA polymerase II promoter + 26
                  regulation of RNA polymerase II transcriptional preinitiation complex assembly + 18
                  regulation of transcriptional open complex formation at RNA polymerase II promoter 0
                  regulation of transcriptional start site selection at RNA polymerase II promoter 0
Path 2
Term Annotations click to browse term
  biological_process 19245
    metabolic process 11438
      cellular metabolic process 10461
        cellular aromatic compound metabolic process 5385
          nucleobase-containing compound metabolic process 5163
            nucleic acid metabolic process 4679
              RNA metabolic process 4191
                RNA biosynthetic process 3276
                  nucleic acid-templated transcription 3264
                    transcription, DNA-templated 3217
                      regulation of transcription, DNA-templated 3104
                        regulation of DNA-templated transcription, initiation 44
                          regulation of transcription initiation from RNA polymerase II promoter 34
                            negative regulation of transcription initiation from RNA polymerase II promoter + 5
                            positive regulation of transcription initiation from RNA polymerase II promoter + 26
                            regulation of RNA polymerase II transcriptional preinitiation complex assembly + 18
                            regulation of transcriptional open complex formation at RNA polymerase II promoter 0
                            regulation of transcriptional start site selection at RNA polymerase II promoter 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.