Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of transcription initiation from RNA polymerase II promoter
go back to main search page
Accession:GO:0060261 term browser browse the term
Definition:Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.


GViewer not supported for chinchilla.
show annotations for term's descendants           Sort by:
 
positive regulation of transcription initiation from RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 ISO (PMID:21993297) UniProt PMID:21993297 NCBI chrNW_004955448:5,634,072...5,676,272
Ensembl chrNW_004955448:5,634,072...5,676,319
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (MGI:MGI:5314556|PMID:22323595) MGI PMID:22323595 MGI:MGI:5314556 NCBI chrNW_004955555:2,393,510...2,430,180
Ensembl chrNW_004955555:2,393,278...2,406,582
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (MGI:MGI:5314556|PMID:22323595) MGI PMID:22323595 MGI:MGI:5314556 NCBI chrNW_004955556:745,175...812,215
Ensembl chrNW_004955556:748,231...813,133
JBrowse link
G Hnf1a HNF1 homeobox A ISO (PMID:15355349) UniProtKB PMID:15355349 NCBI chrNW_004955455:10,694,102...10,717,613
Ensembl chrNW_004955455:10,694,102...10,717,613
JBrowse link
G Hnf1b HNF1 homeobox B ISO (PMID:15355349) UniProtKB PMID:15355349 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420
JBrowse link
G Irf8 interferon regulatory factor 8 NOT ISO (MGI:MGI:5448615|PMID:22942423) MGI PMID:22942423 MGI:MGI:5448615 NCBI chrNW_004955541:973,004...988,493
Ensembl chrNW_004955541:973,022...990,106
JBrowse link
G Med1 mediator complex subunit 1 ISO (PMID:12218053), (PMID:16314496) UniProt PMID:12218053, PMID:16314496 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797
JBrowse link
G Med12 mediator complex subunit 12 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004955475:10,687,168...10,710,286
Ensembl chrNW_004955475:10,687,367...10,710,053
JBrowse link
G Med13 mediator complex subunit 13 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004955451:2,891,583...3,008,230
Ensembl chrNW_004955451:2,895,419...3,008,230
JBrowse link
G Med14 mediator complex subunit 14 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004955565:1,888,442...1,959,141
Ensembl chrNW_004955565:1,888,443...1,959,141
JBrowse link
G Med16 mediator complex subunit 16 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004955495:6,939,084...6,955,885
Ensembl chrNW_004955495:6,934,078...6,959,190
JBrowse link
G Med17 mediator complex subunit 17 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004955414:755,975...779,934 JBrowse link
G Med24 mediator complex subunit 24 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004955451:14,690,721...14,712,038
Ensembl chrNW_004955451:14,690,952...14,711,965
JBrowse link
G Med30 mediator complex subunit 30 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004955417:23,538,984...23,557,837
Ensembl chrNW_004955417:23,538,809...23,559,611
JBrowse link
G Med4 mediator complex subunit 4 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004955431:1,794,863...1,812,641
Ensembl chrNW_004955431:1,794,115...1,812,889
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO (MGI:MGI:6377809|PMID:26691508) CACAO PMID:26691508 MGI:MGI:6377809 NCBI chrNW_004955461:2,714,022...2,718,872
Ensembl chrNW_004955461:2,714,022...2,718,982
JBrowse link
G Nkx2-5 NK2 homeobox 5 ISO (MGI:MGI:83559|PMID:8887666) BHF-UCL PMID:8887666 MGI:MGI:83559 NCBI chrNW_004955408:25,833,649...25,836,673
Ensembl chrNW_004955408:25,832,683...25,836,840
JBrowse link
G Paxip1 PAX interacting protein 1 ISO (MGI:MGI:4354659|PMID:19583951), (MGI:MGI:4821506|PMID:20671152)
(PMID:17925232)
UniProtKB PMID:17925232, PMID:19583951, PMID:20671152 MGI:MGI:4354659, MGI:MGI:4821506 NCBI chrNW_004955491:8,177,422...8,219,764
Ensembl chrNW_004955491:8,177,422...8,219,766
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (MGI:MGI:6377809|PMID:26691508) CACAO PMID:26691508 MGI:MGI:6377809 NCBI chrNW_004955583:995,707...1,003,202 JBrowse link
G Srf serum response factor ISO (PMID:8887666) BHF-UCL PMID:8887666 NCBI chrNW_004955437:9,100,546...9,109,305
Ensembl chrNW_004955437:9,098,968...9,107,057
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 ISO (PMID:11583621), (PMID:18628956) UniProt PMID:11583621, PMID:18628956 NCBI chrNW_004955573:752,646...759,292
Ensembl chrNW_004955573:752,601...759,292
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO (MGI:MGI:5314556|PMID:22323595) MGI PMID:22323595 MGI:MGI:5314556 NCBI chrNW_004955419:27,751,042...27,774,917
Ensembl chrNW_004955419:27,751,043...27,774,917
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor ISO (MGI:MGI:62922|PMID:8215422) MGI PMID:8215422 MGI:MGI:62922 NCBI chrNW_004955410:20,428,531...20,459,482 JBrowse link
G Cand1 cullin associated and neddylation dissociated 1 ISO PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chrNW_004955458:13,815,819...13,850,007
Ensembl chrNW_004955458:13,815,819...13,850,007
JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO RGD PMID:16891311 RGD:1625706 NCBI chrNW_004955457:7,424,403...7,490,630
Ensembl chrNW_004955457:7,431,736...7,491,149
JBrowse link
G Esr1 estrogen receptor 1 ISO (PMID:9841876) CAFA PMID:9841876 NCBI chrNW_004955439:9,588,631...9,953,606
Ensembl chrNW_004955439:9,588,201...9,963,353
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO (MGI:MGI:5317044|PMID:21245044) MGI PMID:21245044 MGI:MGI:5317044 NCBI chrNW_004955456:3,617,988...3,721,791
Ensembl chrNW_004955456:3,635,380...3,721,791
JBrowse link
G Tp53 tumor protein p53 ISO (PMID:24289924) BHF-UCL PMID:24289924 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Wnt10b Wnt family member 10B ISO (MGI:MGI:3820325|PMID:19056892) MGI PMID:19056892 MGI:MGI:3820325 NCBI chrNW_004955500:7,782,782...7,800,281
Ensembl chrNW_004955500:7,782,782...7,788,309
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    metabolic process 7610
      positive regulation of metabolic process 3302
        positive regulation of macromolecule metabolic process 3062
          positive regulation of gene expression 2042
            positive regulation of transcription, DNA-templated 1387
              positive regulation of transcription by RNA polymerase II 1115
                positive regulation of transcription initiation from RNA polymerase II promoter 29
                  positive regulation of RNA polymerase II transcription preinitiation complex assembly 7
Path 2
Term Annotations click to browse term
  biological_process 11892
    metabolic process 7610
      cellular metabolic process 7025
        cellular aromatic compound metabolic process 3735
          nucleobase-containing compound metabolic process 3563
            nucleic acid metabolic process 3276
              RNA metabolic process 2901
                RNA biosynthetic process 2351
                  regulation of RNA biosynthetic process 2272
                    regulation of nucleic acid-templated transcription 2267
                      regulation of transcription, DNA-templated 2259
                        regulation of DNA-templated transcription, initiation 44
                          positive regulation of DNA-templated transcription, initiation 37
                            positive regulation of transcription initiation from RNA polymerase II promoter 29
                              positive regulation of RNA polymerase II transcription preinitiation complex assembly 7
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.