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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of transcription initiation from RNA polymerase II promoter
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Accession:GO:0060261 term browser browse the term
Definition:Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.


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positive regulation of transcription initiation from RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHX36 DEAH-box helicase 36 IEA Ensembl GO_REF:0000107 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (MGI:MGI:5314556|PMID:22323595) MGI PMID:22323595 MGI:MGI:5314556 NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G GTF2B general transcription factor IIB IEA Ensembl GO_REF:0000107 NCBI chr 6:59,491,986...59,527,142
Ensembl chr 6:59,492,055...59,527,054
JBrowse link
G HNF1A HNF1 homeobox A ISO (PMID:15355349) UniProtKB PMID:15355349 NCBI chr26:16,805,690...16,826,065
Ensembl chr26:16,805,690...16,824,790
JBrowse link
G HNF1B HNF1 homeobox B IEA Ensembl GO_REF:0000107 NCBI chr 9:37,437,992...37,493,200
Ensembl chr 9:37,438,583...37,492,993
JBrowse link
G IRF8 interferon regulatory factor 8 NOT ISO (MGI:MGI:5448615|PMID:22942423) MGI PMID:22942423 MGI:MGI:5448615 NCBI chr 5:66,789,264...66,812,477
Ensembl chr 5:66,791,350...66,842,179
JBrowse link
G MED1 mediator complex subunit 1 ISS UniProt GO_REF:0000024 NCBI chr 9:22,989,257...23,019,350
Ensembl chr 9:22,989,301...23,019,349
JBrowse link
G MED12 mediator complex subunit 12 IEA Ensembl GO_REF:0000107 NCBI chr  X:55,487,629...55,508,941
Ensembl chr  X:55,482,013...55,509,992
JBrowse link
G MED13 mediator complex subunit 13 IEA Ensembl GO_REF:0000107 NCBI chr 9:34,638,892...34,742,235
Ensembl chr 9:34,641,601...34,738,352
JBrowse link
G MED14 mediator complex subunit 14 IEA Ensembl GO_REF:0000107 NCBI chr  X:35,125,270...35,191,260
Ensembl chr  X:35,125,774...35,191,122
JBrowse link
G MED16 mediator complex subunit 16 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chr20:57,771,543...57,782,839
Ensembl chr20:57,777,827...57,782,819
JBrowse link
G MED17 mediator complex subunit 17 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chr21:6,967,304...6,990,542
Ensembl chr21:6,967,481...6,990,547
JBrowse link
G MED24 mediator complex subunit 24 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chr 9:22,500,937...22,528,262
Ensembl chr 9:22,501,070...22,527,843
JBrowse link
G MED30 mediator complex subunit 30 IEA Ensembl GO_REF:0000107 NCBI chr13:16,928,166...16,949,503
Ensembl chr13:16,928,161...16,949,295
JBrowse link
G MED4 mediator complex subunit 4 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chr22:3,396,276...3,411,037
Ensembl chr22:3,396,267...3,410,608
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor ISO (MGI:MGI:6377809|PMID:26691508) CACAO PMID:26691508 MGI:MGI:6377809 NCBI chr13:25,200,772...25,205,309
Ensembl chr13:25,200,577...25,205,309
JBrowse link
G NKX2-5 NK2 homeobox 5 IEA Ensembl GO_REF:0000107 NCBI chr 4:39,240,755...39,254,585
Ensembl chr 4:39,244,286...39,247,592
JBrowse link
G PAXIP1 PAX interacting protein 1 IEA Ensembl GO_REF:0000107 NCBI chr16:18,066,289...18,116,007
Ensembl chr16:18,066,246...18,112,506
JBrowse link
G POU5F1 POU class 5 homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr12:860,702...866,099 JBrowse link
G SRF serum response factor IEA Ensembl GO_REF:0000107 NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533
JBrowse link
G SUB1 SUB1 regulator of transcription IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:74,931,105...74,951,707
Ensembl chr 4:74,933,620...74,951,573
JBrowse link
G TAF6 TATA-box binding protein associated factor 6 ISO (PMID:11583621), (PMID:18628956) UniProt PMID:11583621, PMID:18628956 NCBI chr 6:9,475,132...9,488,611
Ensembl chr 6:9,479,884...9,488,561
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IEA Ensembl GO_REF:0000107 NCBI chr11:54,976,978...54,996,140
Ensembl chr11:54,976,976...54,996,065
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor ISO (MGI:MGI:62922|PMID:8215422) MGI PMID:8215422 MGI:MGI:62922 NCBI chr14:31,743,704...31,793,484
Ensembl chr14:31,686,170...31,791,444
JBrowse link
G CAND1 cullin associated and neddylation dissociated 1 ISO PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr10:9,652,176...9,683,373
Ensembl chr10:9,641,732...9,680,118
JBrowse link
G CREB1 cAMP responsive element binding protein 1 ISO RGD PMID:16891311 RGD:1625706 NCBI chr37:15,921,214...15,978,492
Ensembl chr37:15,939,138...15,977,556
JBrowse link
G ESR1 estrogen receptor 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:42,081,952...42,368,544
Ensembl chr 1:42,081,969...42,368,544
JBrowse link
G IKZF1 IKAROS family zinc finger 1 ISO (MGI:MGI:5317044|PMID:21245044) MGI PMID:21245044 MGI:MGI:5317044 NCBI chr18:1,661,851...1,750,987
Ensembl chr18:1,661,690...1,770,768
JBrowse link
G LOC100687259 26S proteasome regulatory subunit 10B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr32:35,814,756...35,816,311 JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:16,845,593...16,859,010
Ensembl chr18:16,845,594...16,858,911
JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:42,212,083...42,218,958 JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:113,548,351...113,557,725
Ensembl chr 1:113,548,373...113,557,630
JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:11,783,422...11,787,624
Ensembl chr 9:11,783,466...11,787,617
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
G WNT10B Wnt family member 10B IEA Ensembl GO_REF:0000107 NCBI chr27:5,599,905...5,605,506
Ensembl chr27:5,601,089...5,605,501
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10657
      positive regulation of metabolic process 3816
        positive regulation of macromolecule metabolic process 3529
          positive regulation of gene expression 2334
            positive regulation of transcription, DNA-templated 1581
              positive regulation of transcription by RNA polymerase II 1292
                positive regulation of transcription initiation from RNA polymerase II promoter 36
                  positive regulation of RNA polymerase II transcription preinitiation complex assembly 12
Path 2
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10657
      cellular metabolic process 9648
        cellular aromatic compound metabolic process 5119
          nucleobase-containing compound metabolic process 4916
            nucleic acid metabolic process 4467
              RNA metabolic process 4002
                RNA biosynthetic process 3149
                  regulation of RNA biosynthetic process 3032
                    regulation of nucleic acid-templated transcription 3028
                      regulation of transcription, DNA-templated 2978
                        regulation of DNA-templated transcription, initiation 50
                          positive regulation of DNA-templated transcription, initiation 43
                            positive regulation of transcription initiation from RNA polymerase II promoter 36
                              positive regulation of RNA polymerase II transcription preinitiation complex assembly 12
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.