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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of transcription initiation from RNA polymerase II promoter
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Accession:GO:0060261 term browser browse the term
Definition:Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.


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positive regulation of transcription initiation from RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHX36 DEAH-box helicase 36 IMP (PMID:21993297) UniProt PMID:21993297 NCBI chr 3:154,272,546...154,324,487
Ensembl chr 3:154,272,546...154,324,487
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr19:45,407,334...45,451,547
Ensembl chr19:45,407,333...45,478,828
Ensembl chr19:45,407,333...45,478,828
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr10:49,434,881...49,539,538
Ensembl chr10:49,454,470...49,539,538
JBrowse link
G HNF1A HNF1 homeobox A IGI (PMID:15355349) UniProtKB PMID:15355349 NCBI chr12:120,977,683...121,002,512
Ensembl chr12:120,978,543...121,002,512
JBrowse link
G HNF1B HNF1 homeobox B IDA (PMID:15355349) UniProtKB PMID:15355349 NCBI chr17:37,686,431...37,745,059
Ensembl chr17:37,686,431...37,745,105
JBrowse link
G IRF8 interferon regulatory factor 8 NOT ISO (MGI:MGI:5448615|PMID:22942423) MGI PMID:22942423 MGI:MGI:5448615 NCBI chr16:85,899,162...85,922,609
Ensembl chr16:85,899,162...85,922,606
JBrowse link
G MED1 mediator complex subunit 1 IDA (PMID:12218053), (PMID:16314496) UniProt PMID:12218053, PMID:16314496 NCBI chr17:39,404,285...39,451,281
Ensembl chr17:39,404,285...39,451,272
JBrowse link
G MED12 mediator complex subunit 12 IDA (PMID:12218053) UniProt PMID:12218053 NCBI chr  X:71,118,596...71,142,450
Ensembl chr  X:71,118,556...71,142,454
JBrowse link
G MED13 mediator complex subunit 13 IDA (PMID:12218053) UniProt PMID:12218053 NCBI chr17:61,942,605...62,065,983
Ensembl chr17:61,942,605...62,065,278
JBrowse link
G MED14 mediator complex subunit 14 IDA (PMID:12218053) UniProt PMID:12218053 NCBI chr  X:40,648,305...40,736,122
Ensembl chr  X:40,648,305...40,735,858
JBrowse link
G MED16 mediator complex subunit 16 IDA (PMID:12218053) UniProt PMID:12218053 NCBI chr19:867,961...893,228
Ensembl chr19:867,630...893,218
JBrowse link
G MED17 mediator complex subunit 17 IDA (PMID:12218053) UniProt PMID:12218053 NCBI chr11:93,784,282...93,814,963
Ensembl chr11:93,784,227...93,814,963
JBrowse link
G MED24 mediator complex subunit 24 IDA (PMID:12218053) UniProt PMID:12218053 NCBI chr17:40,019,104...40,054,408
Ensembl chr17:40,019,097...40,061,215
JBrowse link
G MED30 mediator complex subunit 30 IDA (PMID:12218053) UniProt PMID:12218053 NCBI chr 8:117,520,713...117,540,262
Ensembl chr 8:117,520,713...117,540,262
JBrowse link
G MED4 mediator complex subunit 4 IDA (PMID:12218053) UniProt PMID:12218053 NCBI chr13:48,075,724...48,095,104
Ensembl chr13:48,053,323...48,095,131
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor ISO (MGI:MGI:6377809|PMID:26691508) CACAO PMID:26691508 MGI:MGI:6377809 NCBI chr 8:127,735,434...127,742,951
Ensembl chr 8:127,735,434...127,742,951
JBrowse link
G NKX2-5 NK2 homeobox 5 ISS (PMID:8900537) BHF-UCL PMID:8900537 NCBI chr 5:173,232,109...173,235,321
Ensembl chr 5:173,232,109...173,235,311
JBrowse link
G PAXIP1 PAX interacting protein 1 IMP
ISS
(PMID:17925232) UniProtKB PMID:17925232 GO_REF:0000024 NCBI chr 7:154,943,690...155,003,419
Ensembl chr 7:154,943,687...155,003,124
JBrowse link
G POU5F1 POU class 5 homeobox 1 ISO (MGI:MGI:6377809|PMID:26691508) CACAO PMID:26691508 MGI:MGI:6377809 NCBI chr 6:31,164,337...31,170,682
Ensembl chr 6:31,164,337...31,180,731
JBrowse link
G SRF serum response factor IDA (PMID:8887666) BHF-UCL PMID:8887666 NCBI chr 6:43,171,269...43,181,506
Ensembl chr 6:43,171,269...43,181,506
JBrowse link
G SUB1 SUB1 regulator of transcription IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:32,531,778...32,604,079
Ensembl chr 5:32,531,633...32,604,079
JBrowse link
G TAF6 TATA-box binding protein associated factor 6 IDA (PMID:11583621), (PMID:18628956) UniProt PMID:11583621, PMID:18628956 NCBI chr 7:100,107,070...100,127,208
Ensembl chr 7:100,107,070...100,119,841
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IEA Ensembl GO_REF:0000107 NCBI chr 9:97,654,398...97,697,403
Ensembl chr 9:97,674,909...97,697,357
Ensembl chr 9:97,674,909...97,697,357
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor ISO (MGI:MGI:62922|PMID:8215422) MGI PMID:8215422 MGI:MGI:62922 NCBI chr 7:17,298,652...17,346,147
Ensembl chr 7:16,916,359...17,346,152
JBrowse link
G CAND1 cullin associated and neddylation dissociated 1 IEA Ensembl GO_REF:0000107 NCBI chr12:67,269,358...67,319,953
Ensembl chr12:67,269,358...67,319,953
JBrowse link
G CREB1 cAMP responsive element binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:207,529,943...207,605,988
Ensembl chr 2:207,529,737...207,605,988
JBrowse link
G ESR1 estrogen receptor 1 IDA (PMID:9841876) CAFA PMID:9841876 NCBI chr 6:151,654,148...152,129,619
Ensembl chr 6:151,656,691...152,129,619
JBrowse link
G IKZF1 IKAROS family zinc finger 1 ISO (MGI:MGI:5317044|PMID:21245044) MGI PMID:21245044 MGI:MGI:5317044 NCBI chr 7:50,303,453...50,405,101
Ensembl chr 7:50,304,068...50,405,101
JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:103,344,405...103,369,395
Ensembl chr 7:103,344,254...103,369,395
JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:47,418,775...47,426,473
Ensembl chr11:47,418,769...47,426,473
JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:39,971,150...39,981,764
Ensembl chr19:39,971,165...39,981,764
JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:63,827,431...63,832,019
Ensembl chr17:63,827,152...63,832,026
JBrowse link
G PSMC6 proteasome 26S subunit, ATPase 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:52,707,163...52,728,590
Ensembl chr14:52,707,178...52,728,590
JBrowse link
G TP53 tumor protein p53 IDA (PMID:24289924) BHF-UCL PMID:24289924 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G WNT10B Wnt family member 10B IEA Ensembl GO_REF:0000107 NCBI chr12:48,965,340...48,979,587
Ensembl chr12:48,965,340...48,971,735
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18670
    metabolic process 12302
      positive regulation of metabolic process 4209
        positive regulation of macromolecule metabolic process 3893
          positive regulation of gene expression 2559
            positive regulation of transcription, DNA-templated 1712
              positive regulation of transcription by RNA polymerase II 1393
                positive regulation of transcription initiation from RNA polymerase II promoter 35
                  positive regulation of RNA polymerase II transcription preinitiation complex assembly 12
Path 2
Term Annotations click to browse term
  biological_process 18670
    metabolic process 12302
      cellular metabolic process 11281
        cellular aromatic compound metabolic process 6234
          nucleobase-containing compound metabolic process 5982
            nucleic acid metabolic process 5435
              RNA metabolic process 4899
                RNA biosynthetic process 3901
                  regulation of RNA biosynthetic process 3713
                    regulation of nucleic acid-templated transcription 3708
                      regulation of transcription, DNA-templated 3637
                        regulation of DNA-templated transcription, initiation 51
                          positive regulation of DNA-templated transcription, initiation 43
                            positive regulation of transcription initiation from RNA polymerase II promoter 35
                              positive regulation of RNA polymerase II transcription preinitiation complex assembly 12
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.