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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of transcription initiation from RNA polymerase II promoter
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Accession:GO:0060261 term browser browse the term
Definition:Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.


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positive regulation of transcription initiation from RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH (Asp-Glu-Ala-His) box polypeptide 36 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:62,468,015...62,507,034
Ensembl chr 3:62,468,013...62,507,004
JBrowse link
G Ercc1 excision repair cross-complementing rodent repair deficiency, complementation group 1 IMP (MGI:MGI:5314556|PMID:22323595) MGI PMID:22323595 MGI:MGI:5314556 NCBI chr 7:19,344,067...19,356,524
Ensembl chr 7:19,344,778...19,356,524
JBrowse link
G Ercc6 excision repair cross-complementing rodent repair deficiency, complementation group 6 IGI
IMP
(MGI:MGI:5314556|PMID:22323595) MGI PMID:22323595 MGI:MGI:5314556 NCBI chr14:32,513,291...32,580,990
Ensembl chr14:32,513,521...32,580,990
JBrowse link
G Hnf1a HNF1 homeobox A ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:114,948,980...114,971,062
Ensembl chr 5:114,948,980...114,971,094
JBrowse link
G Hnf1b HNF1 homeobox B ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:83,850,209...83,905,917
Ensembl chr11:83,850,063...83,905,819
JBrowse link
G Irf8 interferon regulatory factor 8 NOT IDA (MGI:MGI:5448615|PMID:22942423) MGI PMID:22942423 MGI:MGI:5448615 NCBI chr 8:120,736,358...120,756,694
Ensembl chr 8:120,736,358...120,756,694
JBrowse link
G Med1 mediator complex subunit 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:98,152,154...98,193,313
Ensembl chr11:98,152,154...98,193,293
JBrowse link
G Med12 mediator complex subunit 12 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:101,274,091...101,298,934
Ensembl chr  X:101,274,030...101,297,465
JBrowse link
G Med13 mediator complex subunit 13 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:86,267,033...86,357,596
Ensembl chr11:86,267,033...86,357,602
JBrowse link
G Med14 mediator complex subunit 14 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:12,675,368...12,762,594
Ensembl chr  X:12,675,369...12,762,073
JBrowse link
G Med16 mediator complex subunit 16 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:79,894,706...79,908,938
Ensembl chr10:79,894,708...79,908,923
JBrowse link
G Med17 mediator complex subunit 17 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:15,260,351...15,279,906
Ensembl chr 9:15,260,351...15,279,931
JBrowse link
G Med24 mediator complex subunit 24 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:98,704,597...98,729,419
Ensembl chr11:98,704,591...98,729,435
JBrowse link
G Med30 mediator complex subunit 30 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr15:52,712,445...52,730,431
Ensembl chr15:52,712,408...52,730,564
JBrowse link
G Med4 mediator complex subunit 4 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr14:73,510,049...73,518,545
Ensembl chr14:73,510,025...73,518,849
JBrowse link
G Myc myelocytomatosis oncogene IDA (MGI:MGI:6377809|PMID:26691508) CACAO PMID:26691508 MGI:MGI:6377809 NCBI chr15:61,985,341...61,990,361
Ensembl chr15:61,985,391...61,990,374
JBrowse link
G Nkx2-5 NK2 homeobox 5 IDA (MGI:MGI:83559|PMID:8887666) BHF-UCL PMID:8887666 MGI:MGI:83559 NCBI chr17:26,838,664...26,844,988
Ensembl chr17:26,838,664...26,845,009
JBrowse link
G Paxip1 PAX interacting (with transcription-activation domain) protein 1 IMP (MGI:MGI:4354659|PMID:19583951), (MGI:MGI:4821506|PMID:20671152) UniProtKB PMID:19583951, PMID:20671152 MGI:MGI:4354659, MGI:MGI:4821506 NCBI chr 5:27,740,080...27,791,672
Ensembl chr 5:27,740,080...27,791,691
JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 IDA (MGI:MGI:6377809|PMID:26691508) CACAO PMID:26691508 MGI:MGI:6377809 NCBI chr17:35,506,032...35,510,777
Ensembl chr17:35,506,018...35,510,772
JBrowse link
G Srf serum response factor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:46,546,838...46,558,267
Ensembl chr17:46,548,329...46,556,175
JBrowse link
G Sub1 SUB1 homolog, transcriptional regulator IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr15:11,981,336...11,996,038
Ensembl chr15:11,981,339...11,996,983
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:138,178,617...138,187,451
Ensembl chr 5:138,178,617...138,187,451
JBrowse link
G Xpa xeroderma pigmentosum, complementation group A IGI (MGI:MGI:5314556|PMID:22323595) MGI PMID:22323595 MGI:MGI:5314556 NCBI chr 4:46,175,220...46,196,344
Ensembl chr 4:46,155,347...46,196,311
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl-hydrocarbon receptor IDA (MGI:MGI:62922|PMID:8215422) MGI PMID:8215422 MGI:MGI:62922 NCBI chr12:35,497,979...35,534,989
Ensembl chr12:35,497,974...35,535,038
JBrowse link
G Cand1 cullin associated and neddylation disassociated 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr10:119,198,812...119,240,055
Ensembl chr10:119,199,255...119,240,055
JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 1:64,532,794...64,604,548
Ensembl chr 1:64,532,645...64,604,548
JBrowse link
G Esr1 estrogen receptor 1 (alpha) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:4,611,989...5,005,633
Ensembl chr10:4,611,593...5,005,614
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 IMP (MGI:MGI:5317044|PMID:21245044) MGI PMID:21245044 MGI:MGI:5317044 NCBI chr11:11,684,962...11,772,930
Ensembl chr11:11,685,003...11,772,926
JBrowse link
G Psmc2 proteasome (prosome, macropain) 26S subunit, ATPase 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 5:21,785,275...21,803,787
Ensembl chr 5:21,785,283...21,803,787
JBrowse link
G Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 2:91,054,016...91,059,438
Ensembl chr 2:91,054,009...91,066,369
JBrowse link
G Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 7:28,041,702...28,050,092
Ensembl chr 7:28,041,707...28,050,101
JBrowse link
G Psmc5 protease (prosome, macropain) 26S subunit, ATPase 5 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr11:106,256,185...106,263,112
Ensembl chr11:106,256,154...106,263,120
JBrowse link
G Psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr14:45,329,823...45,349,074
Ensembl chr14:45,329,788...45,349,705
JBrowse link
G Trp53 transformation related protein 53 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
G Wnt10b wingless-type MMTV integration site family, member 10B IDA (MGI:MGI:3820325|PMID:19056892) MGI PMID:19056892 MGI:MGI:3820325 NCBI chr15:98,770,712...98,778,206
Ensembl chr15:98,770,712...98,778,150
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    metabolic process 11301
      positive regulation of metabolic process 3861
        positive regulation of macromolecule metabolic process 3561
          positive regulation of gene expression 2357
            positive regulation of transcription, DNA-templated 1560
              positive regulation of transcription by RNA polymerase II 1257
                positive regulation of transcription initiation from RNA polymerase II promoter 35
                  positive regulation of RNA polymerase II transcription preinitiation complex assembly 12
Path 2
Term Annotations click to browse term
  biological_process 23386
    metabolic process 11301
      cellular metabolic process 10089
        cellular aromatic compound metabolic process 5437
          nucleobase-containing compound metabolic process 5205
            nucleic acid metabolic process 4765
              RNA metabolic process 4271
                RNA biosynthetic process 3374
                  regulation of RNA biosynthetic process 3271
                    regulation of nucleic acid-templated transcription 3266
                      regulation of transcription, DNA-templated 3251
                        regulation of DNA-templated transcription, initiation 51
                          positive regulation of DNA-templated transcription, initiation 43
                            positive regulation of transcription initiation from RNA polymerase II promoter 35
                              positive regulation of RNA polymerase II transcription preinitiation complex assembly 12
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.